Wall clock time and date at job start Wed Apr 1 2020 03:02:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47459 * 2 1 4 4 C 1.50701 * 109.47237 * 240.00045 * 2 1 3 5 5 O 1.21289 * 119.99813 * 274.46124 * 4 2 1 6 6 N 1.34777 * 120.00060 * 94.46321 * 4 2 1 7 7 C 1.47576 * 134.49152 * 354.97098 * 6 4 2 8 8 C 1.53944 * 86.11597 * 155.36071 * 7 6 4 9 9 N 1.46506 * 113.74123 * 137.94921 * 8 7 6 10 10 C 1.35311 * 125.87075 * 275.32585 * 9 8 7 11 11 C 1.35353 * 106.17412 * 180.11752 * 10 9 8 12 12 C 1.50703 * 126.74951 * 179.85135 * 11 10 9 13 13 N 1.46497 * 109.46874 * 94.71380 * 12 11 10 14 14 C 1.36935 * 119.99877 * 179.72257 * 13 12 11 15 15 H 1.07999 * 119.99900 * 0.27603 * 14 13 12 16 16 C 1.38814 * 120.00403 * 180.27433 * 14 13 12 17 17 N 1.31614 * 120.00387 * 180.02562 * 16 14 13 18 18 Si 1.86804 * 119.99524 * 0.02562 * 16 14 13 19 19 H 1.48499 * 109.47072 * 90.00216 * 18 16 14 20 20 H 1.48501 * 109.47022 * 209.99927 * 18 16 14 21 21 H 1.48496 * 109.47315 * 329.99869 * 18 16 14 22 22 N 1.33765 * 106.49461 * 359.59283 * 11 10 9 23 23 N 1.28637 * 108.89017 * 0.26031 * 22 11 10 24 24 C 1.47582 * 134.49202 * 174.97403 * 6 4 2 25 25 C 1.50704 * 109.47207 * 120.00084 * 2 1 3 26 26 C 1.34510 * 125.78700 * 240.00186 * 25 2 1 27 27 C 1.41386 * 106.83917 * 179.97438 * 26 25 2 28 28 C 1.34518 * 106.84066 * 0.02562 * 27 26 25 29 29 O 1.34300 * 125.78696 * 59.68801 * 25 2 1 30 30 H 1.08996 * 109.47294 * 301.13241 * 1 2 3 31 31 H 1.09002 * 109.46597 * 61.13054 * 1 2 3 32 32 H 1.09001 * 109.46595 * 181.12704 * 1 2 3 33 33 H 1.08996 * 113.77217 * 41.05698 * 7 6 4 34 34 H 1.09002 * 113.76667 * 269.66092 * 7 6 4 35 35 H 1.09002 * 113.74142 * 269.15241 * 8 7 6 36 36 H 1.08000 * 126.91390 * 359.96870 * 10 9 8 37 37 H 1.08998 * 109.47199 * 334.71380 * 12 11 10 38 38 H 1.09000 * 109.46836 * 214.71691 * 12 11 10 39 39 H 0.97001 * 120.00051 * 359.97438 * 13 12 11 40 40 H 0.97001 * 120.00066 * 179.97438 * 17 16 14 41 41 H 1.08999 * 113.77176 * 90.33473 * 24 6 4 42 42 H 1.09006 * 113.76832 * 318.94004 * 24 6 4 43 43 H 1.07993 * 126.58470 * 359.96638 * 26 25 2 44 44 H 1.07998 * 126.58396 * 180.02562 * 27 26 25 45 45 H 1.08000 * 125.79044 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 8 2.1575 -1.9168 -1.2256 6 7 2.3427 -0.0052 -2.3363 7 6 2.2297 1.4145 -2.7231 8 6 3.3786 1.1294 -3.7073 9 7 3.1955 1.7476 -5.0228 10 6 2.4876 1.2271 -6.0519 11 6 2.5838 2.1194 -7.0651 12 6 1.9678 1.9979 -8.4351 13 7 0.6796 2.6953 -8.4549 14 6 -0.0652 2.7251 -9.6036 15 1 0.2949 2.2306 -10.4936 16 6 -1.2832 3.3908 -9.6241 17 7 -1.9993 3.4189 -10.7279 18 14 -1.9057 4.2466 -8.0847 19 1 -1.4210 5.6501 -8.0683 20 1 -3.3907 4.2357 -8.0785 21 1 -1.4005 3.5343 -6.8837 22 7 3.3283 3.1330 -6.6092 23 7 3.6751 2.8822 -5.3961 24 6 2.9317 -0.3425 -3.6467 25 6 2.0324 -0.7104 1.2305 26 6 2.8089 -0.1720 2.1877 27 6 3.0378 -1.1848 3.1473 28 6 2.3878 -2.2817 2.7187 29 8 1.7758 -1.9868 1.5602 30 1 -0.3633 0.5313 0.8796 31 1 -0.3632 0.4962 -0.9000 32 1 -0.3632 -1.0275 0.0202 33 1 2.4958 2.1094 -1.9266 34 1 1.2865 1.6637 -3.2092 35 1 4.3693 1.3066 -3.2886 36 1 1.9552 0.2875 -6.0634 37 1 1.8147 0.9452 -8.6726 38 1 2.6339 2.4438 -9.1738 39 1 0.3561 3.1391 -7.6554 40 1 -2.8506 3.8838 -10.7421 41 1 2.1947 -0.6095 -4.4041 42 1 3.7584 -1.0506 -3.5876 43 1 3.1855 0.8398 2.2176 44 1 3.6223 -1.0950 4.0510 45 1 2.3586 -3.2361 3.2234 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001105327017.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:02:22 Heat of formation + Delta-G solvation = 148.649757 kcal Electronic energy + Delta-G solvation = -29041.785495 eV Core-core repulsion = 24873.155787 eV Total energy + Delta-G solvation = -4168.629708 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -43.31488 -42.99639 -40.90576 -38.60391 -35.25135 -34.74129 -33.63202 -33.23542 -31.95986 -30.41122 -29.77056 -28.93769 -27.26032 -26.22748 -25.24872 -23.84636 -22.48989 -22.17055 -21.56913 -20.94491 -20.67089 -19.56030 -18.30174 -17.90977 -17.77970 -17.37364 -16.71196 -16.33939 -15.93312 -15.46201 -14.97066 -14.85232 -14.59138 -14.53029 -14.13307 -13.96222 -13.80879 -13.47191 -13.23307 -13.20365 -13.07952 -12.98320 -12.77234 -12.69638 -12.31372 -12.15319 -12.13441 -11.93564 -11.63333 -11.15394 -10.91130 -10.69445 -10.44085 -10.26656 -10.20275 -10.04969 -9.61306 -9.47068 -9.10843 -8.92506 -8.90494 -7.26066 -5.77612 -3.13658 1.24633 1.52989 1.74325 1.92629 2.19165 2.42578 2.66094 2.67110 3.27809 3.36247 3.41599 3.45222 3.58531 3.93182 3.98656 4.13835 4.39503 4.43766 4.48355 4.58955 4.61953 4.63579 4.71884 4.75037 4.85132 4.90109 5.04197 5.07169 5.13573 5.18074 5.29908 5.39534 5.45951 5.50575 5.54533 5.61798 5.68295 5.69343 6.06197 6.17911 6.50472 6.51170 6.62612 6.75348 6.88525 7.49219 7.96571 8.40815 8.59840 9.18663 9.91035 10.10737 11.40431 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.016372 B = 0.002139 C = 0.002007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1709.812161 B =13086.887337 C =13951.192651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.020 4.020 3 H 0.119 0.881 4 C 0.548 3.452 5 O -0.513 6.513 6 N -0.644 5.644 7 C 0.095 3.905 8 C 0.113 3.887 9 N -0.295 5.295 10 C -0.044 4.044 11 C -0.006 4.006 12 C 0.236 3.764 13 N -0.749 5.749 14 C -0.244 4.244 15 H 0.094 0.906 16 C 0.007 3.993 17 N -0.932 5.932 18 Si 0.885 3.115 19 H -0.283 1.283 20 H -0.291 1.291 21 H -0.280 1.280 22 N -0.250 5.250 23 N -0.089 5.089 24 C 0.106 3.894 25 C -0.001 4.001 26 C -0.202 4.202 27 C -0.218 4.218 28 C -0.034 4.034 29 O -0.155 6.155 30 H 0.077 0.923 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.104 0.896 34 H 0.103 0.897 35 H 0.147 0.853 36 H 0.191 0.809 37 H 0.047 0.953 38 H 0.049 0.951 39 H 0.362 0.638 40 H 0.260 0.740 41 H 0.103 0.897 42 H 0.104 0.896 43 H 0.149 0.851 44 H 0.149 0.851 45 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.023 -9.805 29.503 32.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.041 4.041 3 H 0.137 0.863 4 C 0.337 3.663 5 O -0.387 6.387 6 N -0.382 5.382 7 C -0.029 4.029 8 C 0.009 3.991 9 N -0.090 5.090 10 C -0.194 4.194 11 C -0.144 4.144 12 C 0.108 3.892 13 N -0.395 5.395 14 C -0.374 4.374 15 H 0.111 0.889 16 C -0.189 4.189 17 N -0.580 5.580 18 Si 0.716 3.284 19 H -0.210 1.210 20 H -0.217 1.217 21 H -0.207 1.207 22 N -0.118 5.118 23 N -0.068 5.068 24 C -0.017 4.017 25 C -0.052 4.052 26 C -0.221 4.221 27 C -0.237 4.237 28 C -0.102 4.102 29 O -0.049 6.049 30 H 0.096 0.904 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.122 0.878 34 H 0.121 0.879 35 H 0.165 0.835 36 H 0.208 0.792 37 H 0.065 0.935 38 H 0.067 0.933 39 H 0.195 0.805 40 H 0.070 0.930 41 H 0.121 0.879 42 H 0.122 0.878 43 H 0.167 0.833 44 H 0.167 0.833 45 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 11.637 -9.622 29.700 33.318 hybrid contribution -1.026 -0.157 1.100 1.512 sum 10.611 -9.779 30.799 34.012 Atomic orbital electron populations 1.21780 0.90461 1.04193 1.03676 1.19761 0.98722 0.98757 0.86858 0.86314 1.20097 0.76621 0.86990 0.82594 1.90791 1.51608 1.13508 1.82760 1.49658 1.64203 1.10556 1.13788 1.23757 0.98807 0.83506 0.96791 1.23696 1.02227 0.93528 0.79618 1.47136 1.34911 1.15206 1.11747 1.23400 1.03681 1.03976 0.88356 1.22551 1.00856 0.91661 0.99318 1.18940 0.86998 0.96861 0.86423 1.42639 1.19243 1.65419 1.12238 1.19036 0.99404 1.29027 0.89903 0.88862 1.24640 0.97209 1.00419 0.96652 1.69693 1.14571 1.47753 1.25953 0.86542 0.77967 0.80215 0.83726 1.20953 1.21741 1.20662 1.75137 1.12532 1.22876 1.01246 1.78312 1.19525 0.99752 1.09173 1.23572 0.98739 0.94535 0.84849 1.21526 1.02554 0.83364 0.97774 1.21589 1.03380 1.01385 0.95768 1.21815 1.05977 0.93435 1.02500 1.24137 0.98472 1.00871 0.86760 1.84103 1.58362 1.27480 1.34998 0.90390 0.90945 0.90958 0.87770 0.87892 0.83514 0.79238 0.93514 0.93328 0.80528 0.93010 0.87887 0.87751 0.83323 0.83315 0.78029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.92 9.16 37.16 0.34 -0.58 16 2 C -0.02 -0.14 2.98 -92.92 -0.28 -0.42 16 3 H 0.12 0.50 7.47 -51.93 -0.39 0.12 16 4 C 0.55 5.26 7.05 -10.98 -0.08 5.18 16 5 O -0.51 -7.08 16.74 -5.07 -0.08 -7.16 16 6 N -0.64 -4.74 3.61 -178.56 -0.64 -5.38 16 7 C 0.10 0.55 8.23 -2.98 -0.02 0.52 16 8 C 0.11 0.77 5.15 -70.15 -0.36 0.41 16 9 N -0.30 -3.32 3.54 -56.30 -0.20 -3.52 16 10 C -0.04 -0.55 10.72 -17.05 -0.18 -0.74 16 11 C -0.01 -0.11 6.62 -82.78 -0.55 -0.65 16 12 C 0.24 4.54 6.82 -5.19 -0.04 4.50 16 13 N -0.75 -17.82 5.40 -61.09 -0.33 -18.15 16 14 C -0.24 -6.84 10.47 -15.06 -0.16 -7.00 16 15 H 0.09 2.75 8.06 -52.49 -0.42 2.33 16 16 C 0.01 0.20 5.50 -17.43 -0.10 0.10 16 17 N -0.93 -29.08 13.97 55.49 0.78 -28.31 16 18 Si 0.89 22.23 27.74 -169.99 -4.71 17.52 16 19 H -0.28 -7.17 7.11 56.52 0.40 -6.77 16 20 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 21 H -0.28 -6.62 6.52 56.52 0.37 -6.25 16 22 N -0.25 -4.51 12.41 33.29 0.41 -4.09 16 23 N -0.09 -1.34 13.17 60.35 0.79 -0.54 16 24 C 0.11 0.71 8.20 -2.97 -0.02 0.68 16 25 C 0.00 -0.01 5.55 -35.62 -0.20 -0.21 16 26 C -0.20 -1.56 10.78 -39.70 -0.43 -1.98 16 27 C -0.22 -1.58 10.91 -39.70 -0.43 -2.02 16 28 C -0.03 -0.26 12.09 29.42 0.36 0.10 16 29 O -0.15 -1.62 10.08 -4.92 -0.05 -1.67 16 30 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.10 0.35 7.81 -51.93 -0.41 -0.05 16 34 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.15 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.19 1.77 6.72 -52.49 -0.35 1.42 16 37 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.36 8.65 5.52 -40.82 -0.23 8.42 16 40 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 41 H 0.10 0.66 6.31 -51.93 -0.33 0.33 16 42 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.15 0.81 8.06 -52.49 -0.42 0.39 16 44 H 0.15 0.74 8.06 -52.49 -0.42 0.32 16 45 H 0.20 0.80 8.06 -52.49 -0.42 0.38 16 LS Contribution 387.10 15.07 5.83 5.83 Total: -1.00 -38.36 387.10 -6.29 -44.66 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: -5.94 Total: 2.92 kcal Atomic # 6 Polarization: 0.05 SS G_CDS: -2.15 Total: -2.09 kcal Atomic # 7 Polarization: -60.82 SS G_CDS: 0.81 Total: -60.01 kcal Atomic # 8 Polarization: -8.70 SS G_CDS: -0.13 Total: -8.83 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -4.71 Total: 17.52 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -38.36 -6.29 -44.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105327017.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 193.309 kcal (2) G-P(sol) polarization free energy of solvation -38.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 154.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.659 kcal (6) G-S(sol) free energy of system = (1) + (5) 148.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds