Wall clock time and date at job start Wed Apr 1 2020 03:02:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47459 * 2 1 4 4 C 1.50701 * 109.47237 * 240.00045 * 2 1 3 5 5 O 1.21289 * 119.99813 * 274.46124 * 4 2 1 6 6 N 1.34777 * 120.00060 * 94.46321 * 4 2 1 7 7 C 1.47576 * 134.49152 * 354.97098 * 6 4 2 8 8 C 1.53944 * 86.11597 * 155.36071 * 7 6 4 9 9 N 1.46506 * 113.74123 * 137.94921 * 8 7 6 10 10 C 1.35311 * 125.87075 * 275.32585 * 9 8 7 11 11 C 1.35353 * 106.17412 * 180.11752 * 10 9 8 12 12 C 1.50703 * 126.74951 * 179.85135 * 11 10 9 13 13 N 1.46497 * 109.46874 * 94.71380 * 12 11 10 14 14 C 1.36935 * 119.99877 * 179.72257 * 13 12 11 15 15 H 1.07999 * 119.99900 * 0.27603 * 14 13 12 16 16 C 1.38814 * 120.00403 * 180.27433 * 14 13 12 17 17 N 1.31614 * 120.00387 * 180.02562 * 16 14 13 18 18 Si 1.86804 * 119.99524 * 0.02562 * 16 14 13 19 19 H 1.48499 * 109.47072 * 90.00216 * 18 16 14 20 20 H 1.48501 * 109.47022 * 209.99927 * 18 16 14 21 21 H 1.48496 * 109.47315 * 329.99869 * 18 16 14 22 22 N 1.33765 * 106.49461 * 359.59283 * 11 10 9 23 23 N 1.28637 * 108.89017 * 0.26031 * 22 11 10 24 24 C 1.47582 * 134.49202 * 174.97403 * 6 4 2 25 25 C 1.50704 * 109.47207 * 120.00084 * 2 1 3 26 26 C 1.34510 * 125.78700 * 240.00186 * 25 2 1 27 27 C 1.41386 * 106.83917 * 179.97438 * 26 25 2 28 28 C 1.34518 * 106.84066 * 0.02562 * 27 26 25 29 29 O 1.34300 * 125.78696 * 59.68801 * 25 2 1 30 30 H 1.08996 * 109.47294 * 301.13241 * 1 2 3 31 31 H 1.09002 * 109.46597 * 61.13054 * 1 2 3 32 32 H 1.09001 * 109.46595 * 181.12704 * 1 2 3 33 33 H 1.08996 * 113.77217 * 41.05698 * 7 6 4 34 34 H 1.09002 * 113.76667 * 269.66092 * 7 6 4 35 35 H 1.09002 * 113.74142 * 269.15241 * 8 7 6 36 36 H 1.08000 * 126.91390 * 359.96870 * 10 9 8 37 37 H 1.08998 * 109.47199 * 334.71380 * 12 11 10 38 38 H 1.09000 * 109.46836 * 214.71691 * 12 11 10 39 39 H 0.97001 * 120.00051 * 359.97438 * 13 12 11 40 40 H 0.97001 * 120.00066 * 179.97438 * 17 16 14 41 41 H 1.08999 * 113.77176 * 90.33473 * 24 6 4 42 42 H 1.09006 * 113.76832 * 318.94004 * 24 6 4 43 43 H 1.07993 * 126.58470 * 359.96638 * 26 25 2 44 44 H 1.07998 * 126.58396 * 180.02562 * 27 26 25 45 45 H 1.08000 * 125.79044 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 8 2.1575 -1.9168 -1.2256 6 7 2.3427 -0.0052 -2.3363 7 6 2.2297 1.4145 -2.7231 8 6 3.3786 1.1294 -3.7073 9 7 3.1955 1.7476 -5.0228 10 6 2.4876 1.2271 -6.0519 11 6 2.5838 2.1194 -7.0651 12 6 1.9678 1.9979 -8.4351 13 7 0.6796 2.6953 -8.4549 14 6 -0.0652 2.7251 -9.6036 15 1 0.2949 2.2306 -10.4936 16 6 -1.2832 3.3908 -9.6241 17 7 -1.9993 3.4189 -10.7279 18 14 -1.9057 4.2466 -8.0847 19 1 -1.4210 5.6501 -8.0683 20 1 -3.3907 4.2357 -8.0785 21 1 -1.4005 3.5343 -6.8837 22 7 3.3283 3.1330 -6.6092 23 7 3.6751 2.8822 -5.3961 24 6 2.9317 -0.3425 -3.6467 25 6 2.0324 -0.7104 1.2305 26 6 2.8089 -0.1720 2.1877 27 6 3.0378 -1.1848 3.1473 28 6 2.3878 -2.2817 2.7187 29 8 1.7758 -1.9868 1.5602 30 1 -0.3633 0.5313 0.8796 31 1 -0.3632 0.4962 -0.9000 32 1 -0.3632 -1.0275 0.0202 33 1 2.4958 2.1094 -1.9266 34 1 1.2865 1.6637 -3.2092 35 1 4.3693 1.3066 -3.2886 36 1 1.9552 0.2875 -6.0634 37 1 1.8147 0.9452 -8.6726 38 1 2.6339 2.4438 -9.1738 39 1 0.3561 3.1391 -7.6554 40 1 -2.8506 3.8838 -10.7421 41 1 2.1947 -0.6095 -4.4041 42 1 3.7584 -1.0506 -3.5876 43 1 3.1855 0.8398 2.2176 44 1 3.6223 -1.0950 4.0510 45 1 2.3586 -3.2361 3.2234 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001105327017.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:02:21 Heat of formation + Delta-G solvation = 121.026237 kcal Electronic energy + Delta-G solvation = -29042.983340 eV Core-core repulsion = 24873.155787 eV Total energy + Delta-G solvation = -4169.827553 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -44.36310 -43.55971 -41.54985 -39.31332 -36.97710 -35.35204 -34.75182 -33.80132 -33.70411 -31.98906 -30.47000 -29.47521 -28.12884 -27.47389 -25.90465 -24.62187 -24.31982 -22.72450 -22.50169 -22.04714 -21.35250 -20.13877 -19.91403 -18.78835 -18.38398 -18.29297 -17.51685 -17.05135 -16.72239 -16.47362 -16.25020 -16.07512 -15.61950 -15.38193 -15.17730 -14.97842 -14.66631 -14.41881 -14.31766 -13.94540 -13.91361 -13.75357 -13.71207 -13.55516 -13.32253 -13.19003 -12.88701 -12.79700 -12.65439 -12.62982 -12.46869 -12.10737 -11.85431 -11.79957 -11.22760 -11.01767 -10.98252 -10.82251 -10.27206 -10.06771 -9.44926 -9.30267 -8.00515 -5.34228 0.53009 0.67330 1.04328 1.27882 1.35999 1.42002 1.43150 1.49354 1.63092 1.81715 2.14587 2.49689 2.67993 3.04963 3.28593 3.32494 3.45644 3.54284 3.65941 3.83241 3.91042 3.95772 4.01795 4.07687 4.16025 4.25704 4.27038 4.31485 4.40073 4.42707 4.51379 4.61986 4.65931 4.71049 4.85330 4.90652 4.98076 5.06532 5.10906 5.15005 5.19471 5.58951 5.60210 5.77394 6.21206 6.22598 6.28639 6.83882 7.07775 7.47659 7.82384 8.02230 9.20540 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.016372 B = 0.002139 C = 0.002007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1709.812161 B =13086.887337 C =13951.192651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.016 4.016 3 H 0.153 0.847 4 C 0.546 3.454 5 O -0.565 6.565 6 N -0.640 5.640 7 C 0.100 3.900 8 C 0.110 3.890 9 N -0.277 5.277 10 C -0.018 4.018 11 C -0.037 4.037 12 C 0.237 3.763 13 N -0.751 5.751 14 C -0.231 4.231 15 H 0.065 0.935 16 C -0.061 4.061 17 N -0.981 5.981 18 Si 0.953 3.047 19 H -0.286 1.286 20 H -0.293 1.293 21 H -0.253 1.253 22 N -0.293 5.293 23 N -0.097 5.097 24 C 0.101 3.899 25 C -0.026 4.026 26 C -0.204 4.204 27 C -0.227 4.227 28 C -0.048 4.048 29 O -0.186 6.186 30 H 0.091 0.909 31 H 0.082 0.918 32 H 0.047 0.953 33 H 0.137 0.863 34 H 0.102 0.898 35 H 0.169 0.831 36 H 0.225 0.775 37 H 0.067 0.933 38 H 0.034 0.966 39 H 0.364 0.636 40 H 0.258 0.742 41 H 0.109 0.891 42 H 0.110 0.890 43 H 0.172 0.828 44 H 0.170 0.830 45 H 0.228 0.772 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.768 -9.462 32.751 36.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.037 4.037 3 H 0.171 0.829 4 C 0.336 3.664 5 O -0.443 6.443 6 N -0.377 5.377 7 C -0.022 4.022 8 C 0.008 3.992 9 N -0.071 5.071 10 C -0.169 4.169 11 C -0.175 4.175 12 C 0.110 3.890 13 N -0.397 5.397 14 C -0.362 4.362 15 H 0.083 0.917 16 C -0.253 4.253 17 N -0.631 5.631 18 Si 0.781 3.219 19 H -0.212 1.212 20 H -0.219 1.219 21 H -0.178 1.178 22 N -0.160 5.160 23 N -0.076 5.076 24 C -0.022 4.022 25 C -0.076 4.076 26 C -0.223 4.223 27 C -0.246 4.246 28 C -0.116 4.116 29 O -0.082 6.082 30 H 0.110 0.890 31 H 0.101 0.899 32 H 0.066 0.934 33 H 0.155 0.845 34 H 0.120 0.880 35 H 0.187 0.813 36 H 0.241 0.759 37 H 0.084 0.916 38 H 0.052 0.948 39 H 0.196 0.804 40 H 0.067 0.933 41 H 0.127 0.873 42 H 0.128 0.872 43 H 0.189 0.811 44 H 0.187 0.813 45 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 12.443 -9.264 32.988 36.453 hybrid contribution -1.126 -0.370 0.111 1.191 sum 11.317 -9.633 33.098 36.282 Atomic orbital electron populations 1.21763 0.90161 1.02986 1.04851 1.19909 0.98909 0.99826 0.85076 0.82937 1.20543 0.75848 0.86496 0.83495 1.90766 1.54002 1.15800 1.83691 1.49637 1.63187 1.11364 1.13463 1.23909 0.98134 0.82990 0.97211 1.24108 1.03991 0.93320 0.77735 1.47410 1.32958 1.14003 1.12717 1.23724 1.02083 1.03863 0.87207 1.22184 1.02762 0.93329 0.99224 1.18925 0.84822 0.96987 0.88296 1.42643 1.20456 1.65850 1.10777 1.19041 0.99444 1.27267 0.90412 0.91657 1.25440 0.97818 1.02055 0.99992 1.69866 1.15181 1.49573 1.28518 0.85437 0.77023 0.78760 0.80697 1.21242 1.21918 1.17789 1.75080 1.13939 1.24320 1.02685 1.78216 1.19979 1.01134 1.08236 1.23706 0.99165 0.94504 0.84787 1.21972 1.03561 0.83196 0.98879 1.21965 1.02598 1.02433 0.95300 1.22187 1.05979 0.93231 1.03197 1.24798 0.98212 1.02316 0.86249 1.84085 1.59332 1.28613 1.36173 0.88981 0.89898 0.93380 0.84547 0.87978 0.81348 0.75906 0.91563 0.94769 0.80377 0.93314 0.87345 0.87175 0.81072 0.81281 0.75580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.54 9.16 71.98 0.66 -0.88 16 2 C -0.02 -0.20 2.98 -12.28 -0.04 -0.23 16 3 H 0.15 0.66 7.47 -2.39 -0.02 0.64 16 4 C 0.55 9.49 7.05 87.66 0.62 10.11 16 5 O -0.57 -15.44 16.74 7.10 0.12 -15.32 16 6 N -0.64 -7.41 3.61 -837.23 -3.02 -10.43 16 7 C 0.10 0.71 8.23 86.48 0.71 1.42 16 8 C 0.11 1.06 5.15 46.75 0.24 1.30 16 9 N -0.28 -5.28 3.54 -332.04 -1.18 -6.46 16 10 C -0.02 -0.38 10.72 83.49 0.89 0.51 16 11 C -0.04 -1.17 6.62 41.60 0.28 -0.89 16 12 C 0.24 8.92 6.82 85.63 0.58 9.50 16 13 N -0.75 -35.07 5.40 -347.18 -1.87 -36.95 16 14 C -0.23 -13.04 10.47 84.03 0.88 -12.16 16 15 H 0.07 3.98 8.06 -2.91 -0.02 3.96 16 16 C -0.06 -3.61 5.50 84.86 0.47 -3.14 16 17 N -0.98 -62.53 13.97 21.65 0.30 -62.23 16 18 Si 0.95 45.65 27.74 68.60 1.90 47.55 16 19 H -0.29 -13.73 7.11 99.48 0.71 -13.03 16 20 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 21 H -0.25 -10.85 6.52 99.48 0.65 -10.20 16 22 N -0.29 -10.15 12.41 -48.60 -0.60 -10.76 16 23 N -0.10 -2.68 13.17 37.02 0.49 -2.19 16 24 C 0.10 1.02 8.20 86.48 0.71 1.73 16 25 C -0.03 -0.42 5.55 24.83 0.14 -0.29 16 26 C -0.20 -2.70 10.78 22.19 0.24 -2.47 16 27 C -0.23 -2.91 10.91 22.19 0.24 -2.67 16 28 C -0.05 -0.70 12.09 66.97 0.81 0.11 16 29 O -0.19 -3.88 10.08 7.64 0.08 -3.80 16 30 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.14 0.16 7.81 -2.39 -0.02 0.14 16 34 H 0.10 0.85 8.14 -2.39 -0.02 0.84 16 35 H 0.17 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.22 3.20 6.72 -2.91 -0.02 3.18 16 37 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 38 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.36 16.65 5.52 -92.71 -0.51 16.14 16 40 H 0.26 15.67 8.31 -92.71 -0.77 14.90 16 41 H 0.11 1.00 6.31 -2.39 -0.02 0.98 16 42 H 0.11 1.03 8.14 -2.38 -0.02 1.01 16 43 H 0.17 1.30 8.06 -2.91 -0.02 1.28 16 44 H 0.17 1.30 8.06 -2.91 -0.02 1.28 16 45 H 0.23 1.59 8.06 -2.91 -0.02 1.57 16 Total: -1.00 -86.64 387.10 4.11 -82.54 By element: Atomic # 1 Polarization: 15.64 SS G_CDS: 0.46 Total: 16.10 kcal Atomic # 6 Polarization: -5.48 SS G_CDS: 7.43 Total: 1.95 kcal Atomic # 7 Polarization: -123.13 SS G_CDS: -5.88 Total: -129.01 kcal Atomic # 8 Polarization: -19.32 SS G_CDS: 0.20 Total: -19.12 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 1.90 Total: 47.55 kcal Total: -86.64 4.11 -82.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105327017.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 203.561 kcal (2) G-P(sol) polarization free energy of solvation -86.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.535 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds