Wall clock time and date at job start Wed Apr 1 2020 03:22:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09005 * 109.47175 * 2 1 4 4 C 1.52997 * 109.47053 * 240.00387 * 2 1 3 5 5 C 1.53003 * 109.47029 * 65.54207 * 4 2 1 6 6 H 1.09001 * 109.47301 * 303.00660 * 5 4 2 7 7 C 1.53002 * 109.47138 * 183.00951 * 5 4 2 8 8 N 1.46500 * 109.47476 * 63.00703 * 5 4 2 9 9 C 1.34773 * 119.99994 * 208.96279 * 8 5 4 10 10 O 1.21580 * 120.00277 * 4.98408 * 9 8 5 11 11 C 1.47587 * 119.99573 * 184.98948 * 9 8 5 12 12 C 1.38641 * 120.41930 * 353.53428 * 11 9 8 13 13 C 1.39254 * 120.72095 * 180.02562 * 12 11 9 14 14 F 1.35104 * 119.43643 * 180.02562 * 13 12 11 15 15 C 1.36550 * 121.13359 * 359.97438 * 13 12 11 16 16 C 1.40290 * 119.91420 * 0.02562 * 15 13 12 17 17 C 1.40719 * 122.07568 * 179.97438 * 16 15 13 18 18 C 1.36237 * 118.66913 * 180.02562 * 17 16 15 19 19 N 1.32531 * 121.83583 * 0.02709 * 18 17 16 20 20 C 1.31331 * 122.72098 * 359.65008 * 19 18 17 21 21 C 1.40119 * 119.92472 * 0.62383 * 20 19 18 22 22 N 1.46496 * 109.47454 * 120.00141 * 2 1 3 23 23 C 1.36939 * 120.00342 * 279.15608 * 22 2 1 24 24 H 1.07998 * 119.99658 * 4.97495 * 23 22 2 25 25 C 1.38809 * 120.00217 * 184.98153 * 23 22 2 26 26 N 1.31617 * 119.99991 * 184.81578 * 25 23 22 27 27 Si 1.86803 * 119.99987 * 4.81540 * 25 23 22 28 28 H 1.48496 * 109.47355 * 94.54555 * 27 25 23 29 29 H 1.48502 * 109.47015 * 214.54742 * 27 25 23 30 30 H 1.48507 * 109.46919 * 334.54918 * 27 25 23 31 31 H 1.08999 * 109.47586 * 59.99449 * 1 2 3 32 32 H 1.08997 * 109.46872 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.46729 * 299.99383 * 1 2 3 34 34 H 1.08996 * 109.47051 * 305.54631 * 4 2 1 35 35 H 1.08993 * 109.47647 * 185.53782 * 4 2 1 36 36 H 1.08998 * 109.47390 * 59.99862 * 7 5 4 37 37 H 1.08995 * 109.47071 * 180.02562 * 7 5 4 38 38 H 1.09001 * 109.46787 * 300.00023 * 7 5 4 39 39 H 0.96998 * 119.99425 * 28.95619 * 8 5 4 40 40 H 1.08000 * 119.64412 * 0.03105 * 12 11 9 41 41 H 1.08002 * 120.04589 * 179.97438 * 15 13 12 42 42 H 1.08003 * 120.66301 * 0.05548 * 17 16 15 43 43 H 1.07998 * 119.08762 * 179.97438 * 18 17 16 44 44 H 1.08000 * 120.03920 * 180.32692 * 20 19 18 45 45 H 0.97000 * 120.00133 * 99.15462 * 22 2 1 46 46 H 0.97003 * 119.99853 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6469 0.0762 -2.4946 6 1 0.5652 0.2088 -2.5146 7 6 2.0910 -0.6823 -3.7470 8 7 2.2991 1.3876 -2.4609 9 6 1.7160 2.4456 -3.0584 10 8 0.6081 2.3339 -3.5464 11 6 2.4227 3.7398 -3.1203 12 6 3.6252 3.9157 -2.4531 13 6 4.2970 5.1343 -2.5069 14 9 5.4674 5.2770 -1.8472 15 6 3.7936 6.1873 -3.2157 16 6 2.5794 6.0502 -3.9048 17 6 2.0190 7.1053 -4.6486 18 6 0.8358 6.8960 -5.2907 19 7 0.2047 5.7320 -5.2316 20 6 0.6728 4.7038 -4.5620 21 6 1.8809 4.8174 -3.8613 22 7 2.0184 -0.6906 1.1961 23 6 2.0688 -0.0310 2.3951 24 1 1.6743 0.9710 2.4771 25 6 2.6271 -0.6501 3.5050 26 7 2.5906 -0.0549 4.6783 27 14 3.4303 -2.3278 3.3332 28 1 4.8905 -2.1585 3.1229 29 1 3.1964 -3.1174 4.5690 30 1 2.8423 -3.0414 2.1711 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8901 34 1 1.5978 -1.7161 -1.3004 35 1 3.1254 -0.8079 -1.2012 36 1 1.6058 -1.6580 -3.7721 37 1 1.8114 -0.1141 -4.6341 38 1 3.1727 -0.8149 -3.7269 39 1 3.1504 1.4943 -2.0085 40 1 4.0456 3.0987 -1.8855 41 1 4.3291 7.1248 -3.2451 42 1 2.5172 8.0616 -4.7096 43 1 0.3995 7.7011 -5.8631 44 1 0.1249 3.7733 -4.5474 45 1 2.3061 -1.6152 1.1388 46 1 2.9804 -0.4878 5.4540 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134388418.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:22:48 Heat of formation + Delta-G solvation = -11.417049 kcal Electronic energy + Delta-G solvation = -29834.588814 eV Core-core repulsion = 25639.098127 eV Total energy + Delta-G solvation = -4195.490687 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -49.34352 -41.41890 -39.84770 -37.46625 -37.12324 -34.94597 -33.47337 -32.35976 -31.34513 -31.09474 -29.78987 -29.10130 -26.46742 -25.30256 -24.07582 -23.82466 -23.43893 -21.45937 -20.94647 -19.88528 -18.87054 -18.26337 -17.71708 -17.55120 -16.67115 -16.45530 -16.11389 -15.82251 -15.58230 -15.16149 -14.91476 -14.77749 -14.45660 -14.18273 -13.94892 -13.66053 -13.52159 -13.35019 -13.26728 -12.77372 -12.70199 -12.65499 -12.25058 -12.08905 -12.05778 -12.04765 -11.76531 -11.39548 -11.00820 -10.72289 -10.61991 -10.58513 -10.26566 -10.06174 -10.00275 -9.68485 -9.62934 -9.36280 -9.22959 -8.95748 -8.52359 -7.29301 -5.80289 -3.15966 -0.37612 0.37744 1.24105 2.21225 2.82976 2.91871 3.32589 3.36011 3.42448 3.62748 3.71327 4.00708 4.12376 4.33519 4.38317 4.45355 4.53406 4.55223 4.70354 4.81128 5.00098 5.06676 5.16476 5.19802 5.29896 5.43091 5.43269 5.47528 5.48525 5.57144 5.61241 5.70201 5.77600 5.78357 5.86282 6.03059 6.09406 6.17419 6.19853 6.29200 6.42387 6.48379 6.50377 6.79875 7.00995 7.26255 7.72022 7.94810 7.97907 8.39094 9.18542 9.90686 10.10902 11.38041 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.012435 B = 0.002882 C = 0.002594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2251.248424 B = 9714.815048 C =10792.749148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.178 3.822 3 H 0.051 0.949 4 C -0.138 4.138 5 C 0.140 3.860 6 H 0.102 0.898 7 C -0.162 4.162 8 N -0.706 5.706 9 C 0.564 3.436 10 O -0.527 6.527 11 C -0.064 4.064 12 C -0.113 4.113 13 C 0.122 3.878 14 F -0.129 7.129 15 C -0.130 4.130 16 C -0.005 4.005 17 C -0.165 4.165 18 C 0.087 3.913 19 N -0.490 5.490 20 C 0.154 3.846 21 C -0.093 4.093 22 N -0.751 5.751 23 C -0.242 4.242 24 H 0.088 0.912 25 C 0.004 3.996 26 N -0.933 5.933 27 Si 0.888 3.112 28 H -0.286 1.286 29 H -0.292 1.292 30 H -0.278 1.278 31 H 0.042 0.958 32 H 0.045 0.955 33 H 0.055 0.945 34 H 0.078 0.922 35 H 0.069 0.931 36 H 0.068 0.932 37 H 0.058 0.942 38 H 0.057 0.943 39 H 0.403 0.597 40 H 0.149 0.851 41 H 0.149 0.851 42 H 0.141 0.859 43 H 0.155 0.845 44 H 0.203 0.797 45 H 0.362 0.638 46 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.635 10.283 -22.411 24.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.068 3.932 3 H 0.069 0.931 4 C -0.177 4.177 5 C 0.036 3.964 6 H 0.120 0.880 7 C -0.221 4.221 8 N -0.357 5.357 9 C 0.351 3.649 10 O -0.406 6.406 11 C -0.069 4.069 12 C -0.133 4.133 13 C 0.101 3.899 14 F -0.107 7.107 15 C -0.149 4.149 16 C -0.011 4.011 17 C -0.185 4.185 18 C -0.056 4.056 19 N -0.198 5.198 20 C -0.015 4.015 21 C -0.096 4.096 22 N -0.395 5.395 23 C -0.372 4.372 24 H 0.106 0.894 25 C -0.192 4.192 26 N -0.581 5.581 27 Si 0.719 3.281 28 H -0.213 1.213 29 H -0.218 1.218 30 H -0.205 1.205 31 H 0.061 0.939 32 H 0.065 0.935 33 H 0.075 0.925 34 H 0.097 0.903 35 H 0.088 0.912 36 H 0.087 0.913 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.239 0.761 40 H 0.167 0.833 41 H 0.166 0.834 42 H 0.159 0.841 43 H 0.172 0.828 44 H 0.219 0.781 45 H 0.195 0.805 46 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 1.115 10.401 -23.030 25.294 hybrid contribution 2.186 -0.905 1.082 2.601 sum 3.301 9.496 -21.948 24.141 Atomic orbital electron populations 1.22441 0.98768 1.00891 1.00560 1.20162 0.92332 0.95518 0.85148 0.93133 1.22241 1.01853 0.99686 0.93877 1.21176 0.99331 0.80935 0.94972 0.88047 1.22188 1.01721 1.00567 0.97576 1.46034 1.25293 1.09108 1.55261 1.17874 0.85306 0.83188 0.78544 1.90578 1.19000 1.83705 1.47329 1.19779 0.94535 0.94193 0.98383 1.21473 0.94761 0.97354 0.99707 1.17220 0.83392 0.94463 0.94823 1.91582 1.44484 1.96183 1.78458 1.21071 0.96257 0.99310 0.98240 1.17824 0.93692 0.93350 0.96196 1.21842 0.98105 0.99083 0.99469 1.22386 0.91944 0.95012 0.96293 1.67724 1.33906 1.00069 1.18134 1.24635 0.90897 0.98475 0.87504 1.18881 0.97655 0.92953 1.00069 1.42880 1.78866 1.12094 1.05656 1.19034 1.32723 0.99973 0.85457 0.89412 1.24709 1.01085 0.97981 0.95425 1.69714 1.50456 1.38921 0.98977 0.86498 0.79778 0.85217 0.76639 1.21258 1.21850 1.20473 0.93922 0.93537 0.92546 0.90322 0.91195 0.91275 0.92316 0.92414 0.76083 0.83313 0.83352 0.84087 0.82766 0.78126 0.80487 0.93075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.89 9.20 37.16 0.34 -2.55 16 2 C 0.18 3.13 2.90 -67.93 -0.20 2.93 16 3 H 0.05 0.93 7.51 -51.93 -0.39 0.54 16 4 C -0.14 -1.82 4.42 -26.73 -0.12 -1.93 16 5 C 0.14 1.59 2.53 -67.93 -0.17 1.42 16 6 H 0.10 1.30 5.69 -51.93 -0.30 1.00 16 7 C -0.16 -1.54 9.52 37.16 0.35 -1.19 16 8 N -0.71 -7.69 4.27 -54.83 -0.23 -7.92 16 9 C 0.56 6.82 7.72 -12.45 -0.10 6.72 16 10 O -0.53 -7.47 13.04 5.30 0.07 -7.40 16 11 C -0.06 -0.70 5.90 -104.67 -0.62 -1.32 16 12 C -0.11 -1.11 9.49 -39.06 -0.37 -1.48 16 13 C 0.12 1.18 7.22 -39.81 -0.29 0.89 16 14 F -0.13 -1.34 17.24 2.25 0.04 -1.30 16 15 C -0.13 -1.12 9.75 -39.42 -0.38 -1.50 16 16 C -0.01 -0.05 5.74 -106.84 -0.61 -0.66 16 17 C -0.17 -1.35 9.88 -39.36 -0.39 -1.74 16 18 C 0.09 0.80 11.07 -17.97 -0.20 0.60 16 19 N -0.49 -5.91 10.30 -13.22 -0.14 -6.05 16 20 C 0.15 1.91 10.48 -17.06 -0.18 1.73 16 21 C -0.09 -1.07 5.76 -106.58 -0.61 -1.68 16 22 N -0.75 -16.81 4.94 -53.43 -0.26 -17.08 16 23 C -0.24 -6.61 10.37 -15.06 -0.16 -6.77 16 24 H 0.09 2.61 8.06 -52.49 -0.42 2.18 16 25 C 0.00 0.11 5.50 -17.43 -0.10 0.01 16 26 N -0.93 -28.92 13.97 55.49 0.78 -28.15 16 27 Si 0.89 21.59 28.01 -169.99 -4.76 16.83 16 28 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 29 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 30 H -0.28 -6.26 6.15 56.52 0.35 -5.91 16 31 H 0.04 0.65 6.52 -51.93 -0.34 0.32 16 32 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 35 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.40 3.81 6.71 -40.82 -0.27 3.54 16 40 H 0.15 1.21 6.41 -52.49 -0.34 0.88 16 41 H 0.15 0.90 8.06 -52.49 -0.42 0.47 16 42 H 0.14 0.71 8.06 -52.48 -0.42 0.28 16 43 H 0.16 0.96 8.06 -52.49 -0.42 0.54 16 44 H 0.20 2.62 4.98 -52.49 -0.26 2.36 16 45 H 0.36 7.97 5.49 -40.82 -0.22 7.74 16 46 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 380.43 15.07 5.73 5.73 Total: -1.00 -32.94 380.43 -8.53 -41.48 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: -5.96 Total: 10.36 kcal Atomic # 6 Polarization: -2.73 SS G_CDS: -3.79 Total: -6.52 kcal Atomic # 7 Polarization: -59.33 SS G_CDS: 0.14 Total: -59.19 kcal Atomic # 8 Polarization: -7.47 SS G_CDS: 0.07 Total: -7.40 kcal Atomic # 9 Polarization: -1.34 SS G_CDS: 0.04 Total: -1.30 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.76 Total: 16.83 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -32.94 -8.53 -41.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134388418.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.059 kcal (2) G-P(sol) polarization free energy of solvation -32.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds