Wall clock time and date at job start Wed Apr 1 2020 03:22:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.47415 * 2 1 4 4 C 1.52999 * 109.47336 * 120.00168 * 2 1 3 5 5 C 1.53004 * 109.47231 * 185.00062 * 4 2 1 6 6 H 1.09005 * 109.46841 * 304.99803 * 5 4 2 7 7 C 1.52996 * 109.47015 * 185.00290 * 5 4 2 8 8 N 1.46491 * 109.47232 * 64.99840 * 5 4 2 9 9 C 1.34783 * 120.00285 * 205.00343 * 8 5 4 10 10 O 1.21586 * 119.99505 * 359.97438 * 9 8 5 11 11 C 1.47581 * 120.00162 * 180.02562 * 9 8 5 12 12 C 1.38645 * 120.41527 * 354.11411 * 11 9 8 13 13 C 1.39262 * 120.71886 * 179.71650 * 12 11 9 14 14 F 1.35095 * 119.43247 * 180.28603 * 13 12 11 15 15 C 1.36549 * 121.12915 * 0.57066 * 13 12 11 16 16 C 1.40287 * 119.91599 * 359.71357 * 15 13 12 17 17 C 1.40717 * 122.07104 * 179.97438 * 16 15 13 18 18 C 1.36248 * 118.66535 * 180.02562 * 17 16 15 19 19 N 1.32519 * 121.83706 * 0.02562 * 18 17 16 20 20 C 1.31331 * 122.72380 * 359.95738 * 19 18 17 21 21 C 1.40113 * 119.92662 * 0.04159 * 20 19 18 22 22 N 1.46503 * 109.46967 * 240.00125 * 2 1 3 23 23 C 1.36939 * 119.99810 * 85.00039 * 22 2 1 24 24 H 1.07994 * 120.00135 * 359.97438 * 23 22 2 25 25 C 1.38818 * 119.99852 * 179.97438 * 23 22 2 26 26 N 1.31621 * 119.99782 * 0.02562 * 25 23 22 27 27 Si 1.86795 * 119.99980 * 179.97438 * 25 23 22 28 28 H 1.48494 * 109.47145 * 0.02562 * 27 25 23 29 29 H 1.48505 * 109.46795 * 119.99989 * 27 25 23 30 30 H 1.48497 * 109.47238 * 239.99866 * 27 25 23 31 31 H 1.09004 * 109.46716 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46817 * 299.99644 * 1 2 3 33 33 H 1.08995 * 109.47486 * 59.99935 * 1 2 3 34 34 H 1.08995 * 109.47064 * 304.99562 * 4 2 1 35 35 H 1.09000 * 109.47346 * 65.00176 * 4 2 1 36 36 H 1.08992 * 109.47660 * 60.00226 * 7 5 4 37 37 H 1.09005 * 109.47018 * 180.02562 * 7 5 4 38 38 H 1.08996 * 109.47111 * 299.99237 * 7 5 4 39 39 H 0.97002 * 120.00032 * 24.99573 * 8 5 4 40 40 H 1.08001 * 119.64749 * 359.97438 * 12 11 9 41 41 H 1.07994 * 120.04521 * 179.74526 * 15 13 12 42 42 H 1.08003 * 120.66926 * 0.05227 * 17 16 15 43 43 H 1.08000 * 119.07611 * 180.02562 * 18 17 16 44 44 H 1.08002 * 120.04011 * 180.02562 * 20 19 18 45 45 H 0.97004 * 120.00242 * 264.99633 * 22 2 1 46 46 H 0.96999 * 119.99785 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5649 -0.6133 1.3136 6 1 3.9954 -0.9923 0.3867 7 6 4.0852 -1.4384 2.4923 8 7 3.9480 0.7893 1.4924 9 6 5.1612 1.2136 1.0866 10 8 5.9379 0.4319 0.5725 11 6 5.5474 2.6265 1.2672 12 6 4.6282 3.5504 1.7403 13 6 4.9874 4.8840 1.9186 14 9 4.0727 5.7610 2.3866 15 6 6.2468 5.3214 1.6232 16 6 7.2046 4.4193 1.1366 17 6 8.5149 4.8208 0.8173 18 6 9.3891 3.8865 0.3491 19 7 9.0376 2.6189 0.1882 20 6 7.8331 2.1754 0.4663 21 6 6.8590 3.0566 0.9540 22 7 2.0183 -0.6906 -1.1962 23 6 2.1490 -0.0074 -2.3758 24 1 1.8918 1.0403 -2.4243 25 6 2.6122 -0.6616 -3.5091 26 7 2.9252 -1.9387 -3.4500 27 14 2.7899 0.2701 -5.1183 28 1 2.3751 1.6822 -4.9211 29 1 4.2069 0.2281 -5.5607 30 1 1.9297 -0.3593 -6.1523 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8899 34 1 1.6055 -0.2618 2.1369 35 1 1.7517 -1.7716 1.2055 36 1 3.8002 -2.4819 2.3593 37 1 5.1715 -1.3611 2.5385 38 1 3.6547 -1.0594 3.4192 39 1 3.3284 1.4128 1.9027 40 1 3.6238 3.2316 1.9770 41 1 6.5053 6.3604 1.7643 42 1 8.8217 5.8490 0.9411 43 1 10.3965 4.1873 0.1024 44 1 7.5936 1.1326 0.3190 45 1 2.2490 -1.6318 -1.1527 46 1 3.2485 -2.3960 -4.2420 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134388420.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:22:57 Heat of formation + Delta-G solvation = -15.077844 kcal Electronic energy + Delta-G solvation = -30318.519493 eV Core-core repulsion = 26122.870062 eV Total energy + Delta-G solvation = -4195.649431 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -49.30769 -41.24340 -39.56547 -37.28563 -36.88388 -34.62218 -33.29962 -32.23519 -31.17112 -30.93280 -29.55811 -28.60708 -26.38319 -25.12460 -23.85334 -23.67237 -23.51680 -21.34698 -20.67315 -19.79471 -18.72313 -18.10353 -17.50950 -17.22026 -16.45327 -16.31009 -16.04504 -15.65408 -15.31052 -15.00289 -14.86858 -14.60839 -14.10782 -14.02034 -13.73345 -13.58588 -13.37442 -13.23340 -13.05287 -12.75371 -12.61080 -12.21086 -12.05829 -11.96308 -11.89279 -11.76704 -11.63145 -11.08825 -10.84232 -10.64155 -10.48950 -10.43095 -10.22617 -9.91154 -9.81133 -9.62809 -9.47418 -9.24837 -8.93338 -8.88131 -8.38189 -6.92632 -5.73222 -3.01304 -0.22849 0.50113 1.40481 2.36897 3.07047 3.18982 3.45790 3.51178 3.53584 3.72356 3.87069 4.14532 4.24803 4.48211 4.52083 4.59438 4.62405 4.68728 4.91925 5.03758 5.16138 5.28940 5.34777 5.41647 5.44614 5.52266 5.60345 5.62838 5.63817 5.79717 5.85575 5.90067 5.91042 5.97700 6.08653 6.24967 6.27953 6.32196 6.39580 6.50934 6.52778 6.67738 6.73240 6.86683 7.04358 7.54356 7.73055 7.88872 8.26687 8.45128 9.56841 10.13239 10.47416 11.49438 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.008874 B = 0.003749 C = 0.003359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3154.705017 B = 7466.937802 C = 8334.431572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.171 3.829 3 H 0.044 0.956 4 C -0.132 4.132 5 C 0.142 3.858 6 H 0.111 0.889 7 C -0.161 4.161 8 N -0.703 5.703 9 C 0.560 3.440 10 O -0.516 6.516 11 C -0.053 4.053 12 C -0.121 4.121 13 C 0.120 3.880 14 F -0.132 7.132 15 C -0.133 4.133 16 C -0.004 4.004 17 C -0.170 4.170 18 C 0.089 3.911 19 N -0.491 5.491 20 C 0.159 3.841 21 C -0.094 4.094 22 N -0.720 5.720 23 C -0.236 4.236 24 H 0.067 0.933 25 C -0.010 4.010 26 N -0.930 5.930 27 Si 0.900 3.100 28 H -0.282 1.282 29 H -0.291 1.291 30 H -0.292 1.292 31 H 0.046 0.954 32 H 0.034 0.966 33 H 0.052 0.948 34 H 0.062 0.938 35 H 0.078 0.922 36 H 0.067 0.933 37 H 0.058 0.942 38 H 0.050 0.950 39 H 0.395 0.605 40 H 0.146 0.854 41 H 0.147 0.853 42 H 0.140 0.860 43 H 0.154 0.846 44 H 0.205 0.795 45 H 0.383 0.617 46 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.547 12.642 16.700 21.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.061 3.939 3 H 0.062 0.938 4 C -0.171 4.171 5 C 0.039 3.961 6 H 0.129 0.871 7 C -0.220 4.220 8 N -0.353 5.353 9 C 0.346 3.654 10 O -0.393 6.393 11 C -0.058 4.058 12 C -0.140 4.140 13 C 0.099 3.901 14 F -0.111 7.111 15 C -0.152 4.152 16 C -0.009 4.009 17 C -0.190 4.190 18 C -0.054 4.054 19 N -0.199 5.199 20 C -0.010 4.010 21 C -0.097 4.097 22 N -0.362 5.362 23 C -0.367 4.367 24 H 0.085 0.915 25 C -0.206 4.206 26 N -0.578 5.578 27 Si 0.732 3.268 28 H -0.207 1.207 29 H -0.218 1.218 30 H -0.219 1.219 31 H 0.065 0.935 32 H 0.053 0.947 33 H 0.071 0.929 34 H 0.080 0.920 35 H 0.097 0.903 36 H 0.086 0.914 37 H 0.077 0.923 38 H 0.069 0.931 39 H 0.230 0.770 40 H 0.164 0.836 41 H 0.165 0.835 42 H 0.158 0.842 43 H 0.172 0.828 44 H 0.221 0.779 45 H 0.217 0.783 46 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 6.791 11.731 15.878 20.877 hybrid contribution -1.128 1.510 -0.405 1.927 sum 5.663 13.240 15.473 21.138 Atomic orbital electron populations 1.22461 0.99480 1.00866 0.99796 1.20225 0.91655 0.95452 0.86584 0.93768 1.22190 0.93456 1.02513 0.98902 1.21156 0.95412 0.79263 1.00297 0.87127 1.22187 1.01645 1.00316 0.97832 1.45912 1.15721 1.12232 1.61439 1.17820 0.82618 0.86315 0.78608 1.90613 1.50250 1.55534 1.42917 1.19895 0.93064 0.94060 0.98829 1.21377 1.00793 0.91503 1.00365 1.17203 0.86983 0.87114 0.98776 1.91551 1.65671 1.68006 1.85844 1.21015 0.91767 1.00921 1.01519 1.17817 0.94324 0.92031 0.96753 1.21815 0.92775 1.01470 1.02909 1.22398 0.99911 0.88637 0.94461 1.67743 1.19843 1.16642 1.15662 1.24739 0.86137 1.02337 0.87814 1.18910 0.94614 0.94108 1.02056 1.42402 1.77984 1.10575 1.05248 1.19180 1.36483 0.93681 0.87342 0.91507 1.24678 1.02113 0.95911 0.97890 1.69650 1.50862 1.08573 1.28703 0.86221 0.77393 0.78790 0.84421 1.20734 1.21847 1.21922 0.93470 0.94726 0.92877 0.91968 0.90312 0.91437 0.92327 0.93061 0.77022 0.83607 0.83523 0.84198 0.82830 0.77906 0.78294 0.93606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.79 9.49 37.16 0.35 -2.43 16 2 C 0.17 3.08 2.84 -67.93 -0.19 2.89 16 3 H 0.04 0.81 7.56 -51.93 -0.39 0.42 16 4 C -0.13 -1.86 4.29 -26.73 -0.11 -1.97 16 5 C 0.14 2.10 2.52 -67.94 -0.17 1.93 16 6 H 0.11 2.18 7.05 -51.93 -0.37 1.81 16 7 C -0.16 -2.00 9.48 37.16 0.35 -1.65 16 8 N -0.70 -9.35 4.40 -54.84 -0.24 -9.59 16 9 C 0.56 8.58 7.70 -12.45 -0.10 8.48 16 10 O -0.52 -9.61 13.13 5.29 0.07 -9.54 16 11 C -0.05 -0.70 5.90 -104.68 -0.62 -1.32 16 12 C -0.12 -1.30 9.48 -39.05 -0.37 -1.67 16 13 C 0.12 1.24 7.22 -39.81 -0.29 0.95 16 14 F -0.13 -1.35 17.24 2.25 0.04 -1.32 16 15 C -0.13 -1.29 9.75 -39.42 -0.38 -1.67 16 16 C 0.00 -0.04 5.74 -106.84 -0.61 -0.66 16 17 C -0.17 -1.67 9.88 -39.36 -0.39 -2.06 16 18 C 0.09 1.00 11.07 -17.97 -0.20 0.80 16 19 N -0.49 -7.14 10.30 -13.22 -0.14 -7.27 16 20 C 0.16 2.42 10.49 -17.06 -0.18 2.24 16 21 C -0.09 -1.29 5.76 -106.58 -0.61 -1.91 16 22 N -0.72 -17.11 4.49 -53.43 -0.24 -17.35 16 23 C -0.24 -6.43 9.93 -15.06 -0.15 -6.58 16 24 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 25 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 26 N -0.93 -28.05 13.06 55.49 0.72 -27.32 16 27 Si 0.90 22.85 29.55 -169.99 -5.02 17.82 16 28 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 29 H -0.29 -7.54 7.11 56.52 0.40 -7.14 16 30 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 31 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 38 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.39 4.07 6.67 -40.82 -0.27 3.80 16 40 H 0.15 1.22 6.42 -52.49 -0.34 0.89 16 41 H 0.15 1.01 8.06 -52.49 -0.42 0.59 16 42 H 0.14 0.89 8.06 -52.48 -0.42 0.47 16 43 H 0.15 1.23 8.06 -52.49 -0.42 0.81 16 44 H 0.21 3.39 4.97 -52.49 -0.26 3.13 16 45 H 0.38 9.78 7.80 -40.82 -0.32 9.46 16 46 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 386.45 15.07 5.82 5.82 Total: -1.00 -32.83 386.45 -8.90 -41.72 By element: Atomic # 1 Polarization: 18.17 SS G_CDS: -6.14 Total: 12.03 kcal Atomic # 6 Polarization: -1.24 SS G_CDS: -3.77 Total: -5.00 kcal Atomic # 7 Polarization: -61.64 SS G_CDS: 0.11 Total: -61.54 kcal Atomic # 8 Polarization: -9.61 SS G_CDS: 0.07 Total: -9.54 kcal Atomic # 9 Polarization: -1.35 SS G_CDS: 0.04 Total: -1.32 kcal Atomic # 14 Polarization: 22.85 SS G_CDS: -5.02 Total: 17.82 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -32.83 -8.90 -41.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134388420.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.645 kcal (2) G-P(sol) polarization free energy of solvation -32.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds