Wall clock time and date at job start Wed Apr 1 2020 03:22:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.47415 * 2 1 4 4 C 1.52999 * 109.47336 * 120.00168 * 2 1 3 5 5 C 1.53004 * 109.47231 * 185.00062 * 4 2 1 6 6 H 1.09005 * 109.46841 * 304.99803 * 5 4 2 7 7 C 1.52996 * 109.47015 * 185.00290 * 5 4 2 8 8 N 1.46491 * 109.47232 * 64.99840 * 5 4 2 9 9 C 1.34783 * 120.00285 * 205.00343 * 8 5 4 10 10 O 1.21586 * 119.99505 * 359.97438 * 9 8 5 11 11 C 1.47581 * 120.00162 * 180.02562 * 9 8 5 12 12 C 1.38645 * 120.41527 * 354.11411 * 11 9 8 13 13 C 1.39262 * 120.71886 * 179.71650 * 12 11 9 14 14 F 1.35095 * 119.43247 * 180.28603 * 13 12 11 15 15 C 1.36549 * 121.12915 * 0.57066 * 13 12 11 16 16 C 1.40287 * 119.91599 * 359.71357 * 15 13 12 17 17 C 1.40717 * 122.07104 * 179.97438 * 16 15 13 18 18 C 1.36248 * 118.66535 * 180.02562 * 17 16 15 19 19 N 1.32519 * 121.83706 * 0.02562 * 18 17 16 20 20 C 1.31331 * 122.72380 * 359.95738 * 19 18 17 21 21 C 1.40113 * 119.92662 * 0.04159 * 20 19 18 22 22 N 1.46503 * 109.46967 * 240.00125 * 2 1 3 23 23 C 1.36939 * 119.99810 * 85.00039 * 22 2 1 24 24 H 1.07994 * 120.00135 * 359.97438 * 23 22 2 25 25 C 1.38818 * 119.99852 * 179.97438 * 23 22 2 26 26 N 1.31621 * 119.99782 * 0.02562 * 25 23 22 27 27 Si 1.86795 * 119.99980 * 179.97438 * 25 23 22 28 28 H 1.48494 * 109.47145 * 0.02562 * 27 25 23 29 29 H 1.48505 * 109.46795 * 119.99989 * 27 25 23 30 30 H 1.48497 * 109.47238 * 239.99866 * 27 25 23 31 31 H 1.09004 * 109.46716 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46817 * 299.99644 * 1 2 3 33 33 H 1.08995 * 109.47486 * 59.99935 * 1 2 3 34 34 H 1.08995 * 109.47064 * 304.99562 * 4 2 1 35 35 H 1.09000 * 109.47346 * 65.00176 * 4 2 1 36 36 H 1.08992 * 109.47660 * 60.00226 * 7 5 4 37 37 H 1.09005 * 109.47018 * 180.02562 * 7 5 4 38 38 H 1.08996 * 109.47111 * 299.99237 * 7 5 4 39 39 H 0.97002 * 120.00032 * 24.99573 * 8 5 4 40 40 H 1.08001 * 119.64749 * 359.97438 * 12 11 9 41 41 H 1.07994 * 120.04521 * 179.74526 * 15 13 12 42 42 H 1.08003 * 120.66926 * 0.05227 * 17 16 15 43 43 H 1.08000 * 119.07611 * 180.02562 * 18 17 16 44 44 H 1.08002 * 120.04011 * 180.02562 * 20 19 18 45 45 H 0.97004 * 120.00242 * 264.99633 * 22 2 1 46 46 H 0.96999 * 119.99785 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5649 -0.6133 1.3136 6 1 3.9954 -0.9923 0.3867 7 6 4.0852 -1.4384 2.4923 8 7 3.9480 0.7893 1.4924 9 6 5.1612 1.2136 1.0866 10 8 5.9379 0.4319 0.5725 11 6 5.5474 2.6265 1.2672 12 6 4.6282 3.5504 1.7403 13 6 4.9874 4.8840 1.9186 14 9 4.0727 5.7610 2.3866 15 6 6.2468 5.3214 1.6232 16 6 7.2046 4.4193 1.1366 17 6 8.5149 4.8208 0.8173 18 6 9.3891 3.8865 0.3491 19 7 9.0376 2.6189 0.1882 20 6 7.8331 2.1754 0.4663 21 6 6.8590 3.0566 0.9540 22 7 2.0183 -0.6906 -1.1962 23 6 2.1490 -0.0074 -2.3758 24 1 1.8918 1.0403 -2.4243 25 6 2.6122 -0.6616 -3.5091 26 7 2.9252 -1.9387 -3.4500 27 14 2.7899 0.2701 -5.1183 28 1 2.3751 1.6822 -4.9211 29 1 4.2069 0.2281 -5.5607 30 1 1.9297 -0.3593 -6.1523 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8899 34 1 1.6055 -0.2618 2.1369 35 1 1.7517 -1.7716 1.2055 36 1 3.8002 -2.4819 2.3593 37 1 5.1715 -1.3611 2.5385 38 1 3.6547 -1.0594 3.4192 39 1 3.3284 1.4128 1.9027 40 1 3.6238 3.2316 1.9770 41 1 6.5053 6.3604 1.7643 42 1 8.8217 5.8490 0.9411 43 1 10.3965 4.1873 0.1024 44 1 7.5936 1.1326 0.3190 45 1 2.2490 -1.6318 -1.1527 46 1 3.2485 -2.3960 -4.2420 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134388420.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:22:56 Heat of formation + Delta-G solvation = -36.125716 kcal Electronic energy + Delta-G solvation = -30319.432198 eV Core-core repulsion = 26122.870062 eV Total energy + Delta-G solvation = -4196.562135 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -50.08498 -42.19840 -40.68060 -38.43081 -38.05078 -36.15124 -34.31783 -33.95303 -32.34282 -31.88137 -30.62170 -30.29091 -27.59259 -26.08875 -25.64081 -24.72715 -24.55389 -22.46804 -21.84765 -21.23075 -19.70074 -19.22796 -18.98729 -18.40520 -17.46892 -17.33549 -16.86023 -16.80030 -16.51265 -16.31246 -15.97193 -15.68658 -15.65206 -15.41874 -15.04810 -14.65562 -14.55935 -14.24323 -14.22164 -14.07114 -13.60384 -13.47232 -13.35421 -13.17357 -12.96492 -12.86977 -12.81940 -12.75191 -12.65763 -12.23469 -12.15904 -11.82113 -11.55796 -11.41829 -11.34244 -10.95511 -10.89937 -10.48968 -10.14587 -10.10962 -9.23785 -8.94001 -7.92322 -5.16904 -1.12967 -0.37403 0.47116 1.40719 1.43033 1.45535 1.50500 2.00131 2.13032 2.55305 2.87301 2.93479 3.29630 3.41386 3.42744 3.56538 3.63877 3.74690 3.81531 3.86809 4.02718 4.12380 4.18729 4.31289 4.41797 4.44626 4.55876 4.56566 4.69290 4.72805 4.76312 4.80753 4.83834 4.91034 4.99285 5.03562 5.06373 5.12252 5.24332 5.36100 5.41858 5.48679 5.51403 5.59927 5.65018 5.68726 6.31430 6.47253 6.94486 7.18745 7.37524 8.18206 8.37188 9.31576 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.008874 B = 0.003749 C = 0.003359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3154.705017 B = 7466.937802 C = 8334.431572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.162 3.838 3 H 0.044 0.956 4 C -0.119 4.119 5 C 0.146 3.854 6 H 0.053 0.947 7 C -0.152 4.152 8 N -0.691 5.691 9 C 0.553 3.447 10 O -0.563 6.563 11 C -0.083 4.083 12 C -0.099 4.099 13 C 0.110 3.890 14 F -0.128 7.128 15 C -0.108 4.108 16 C -0.021 4.021 17 C -0.142 4.142 18 C 0.066 3.934 19 N -0.514 5.514 20 C 0.122 3.878 21 C -0.105 4.105 22 N -0.731 5.731 23 C -0.222 4.222 24 H 0.069 0.931 25 C -0.075 4.075 26 N -0.967 5.967 27 Si 0.955 3.045 28 H -0.267 1.267 29 H -0.303 1.303 30 H -0.292 1.292 31 H 0.041 0.959 32 H 0.077 0.923 33 H 0.028 0.972 34 H 0.109 0.891 35 H 0.078 0.922 36 H 0.071 0.929 37 H 0.039 0.961 38 H 0.083 0.917 39 H 0.412 0.588 40 H 0.169 0.831 41 H 0.185 0.815 42 H 0.187 0.813 43 H 0.185 0.815 44 H 0.175 0.825 45 H 0.371 0.629 46 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.427 16.545 19.156 25.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.055 3.945 3 H 0.062 0.938 4 C -0.157 4.157 5 C 0.041 3.959 6 H 0.071 0.929 7 C -0.210 4.210 8 N -0.343 5.343 9 C 0.341 3.659 10 O -0.443 6.443 11 C -0.088 4.088 12 C -0.118 4.118 13 C 0.090 3.910 14 F -0.106 7.106 15 C -0.126 4.126 16 C -0.027 4.027 17 C -0.161 4.161 18 C -0.078 4.078 19 N -0.223 5.223 20 C -0.047 4.047 21 C -0.108 4.108 22 N -0.372 5.372 23 C -0.355 4.355 24 H 0.087 0.913 25 C -0.268 4.268 26 N -0.618 5.618 27 Si 0.786 3.214 28 H -0.192 1.192 29 H -0.231 1.231 30 H -0.219 1.219 31 H 0.061 0.939 32 H 0.096 0.904 33 H 0.047 0.953 34 H 0.127 0.873 35 H 0.097 0.903 36 H 0.090 0.910 37 H 0.058 0.942 38 H 0.101 0.899 39 H 0.250 0.750 40 H 0.187 0.813 41 H 0.203 0.797 42 H 0.204 0.796 43 H 0.202 0.798 44 H 0.191 0.809 45 H 0.202 0.798 46 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 5.605 15.686 18.391 24.813 hybrid contribution -0.769 0.450 -1.057 1.383 sum 4.836 16.136 17.333 24.170 Atomic orbital electron populations 1.22313 0.97744 1.00886 1.00733 1.20543 0.92649 0.95304 0.86053 0.93826 1.22100 0.92526 1.02509 0.98565 1.20933 0.95841 0.80261 0.98822 0.92894 1.22087 1.00551 1.00322 0.98035 1.45774 1.15493 1.12026 1.60979 1.18275 0.82577 0.87198 0.77859 1.90613 1.51659 1.57054 1.45013 1.19649 0.93835 0.93186 1.02119 1.21597 1.01061 0.91452 0.97727 1.17185 0.87483 0.86866 0.99490 1.91571 1.65548 1.67676 1.85829 1.21381 0.90680 1.02150 0.98413 1.18100 0.95777 0.91176 0.97600 1.22311 0.91314 1.03120 0.99352 1.22942 1.01789 0.87699 0.95351 1.67624 1.19753 1.19014 1.15865 1.24298 0.87499 1.01871 0.90982 1.19003 0.94472 0.95243 1.02060 1.42615 1.78167 1.10147 1.06246 1.19513 1.33750 0.93746 0.88473 0.91272 1.25367 1.03668 0.96777 1.00956 1.69791 1.53145 1.09993 1.28906 0.85329 0.76444 0.78462 0.81204 1.19175 1.23081 1.21887 0.93933 0.90389 0.95273 0.87269 0.90313 0.91012 0.94159 0.89856 0.75016 0.81324 0.79732 0.79576 0.79825 0.80889 0.79754 0.94432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.91 9.49 71.98 0.68 -4.22 16 2 C 0.16 5.66 2.84 44.99 0.13 5.79 16 3 H 0.04 1.53 7.56 -2.39 -0.02 1.51 16 4 C -0.12 -3.11 4.29 30.60 0.13 -2.98 16 5 C 0.15 4.35 2.52 44.99 0.11 4.46 16 6 H 0.05 2.24 7.05 -2.38 -0.02 2.22 16 7 C -0.15 -3.71 9.48 71.98 0.68 -3.03 16 8 N -0.69 -18.25 4.40 -445.66 -1.96 -20.21 16 9 C 0.55 17.88 7.70 86.71 0.67 18.55 16 10 O -0.56 -23.30 13.13 -3.99 -0.05 -23.36 16 11 C -0.08 -2.21 5.90 -19.90 -0.12 -2.32 16 12 C -0.10 -1.91 9.48 22.61 0.21 -1.70 16 13 C 0.11 1.89 7.22 22.12 0.16 2.05 16 14 F -0.13 -2.10 17.24 44.97 0.78 -1.32 16 15 C -0.11 -1.64 9.75 22.37 0.22 -1.42 16 16 C -0.02 -0.43 5.74 -21.30 -0.12 -0.56 16 17 C -0.14 -2.33 9.88 22.41 0.22 -2.11 16 18 C 0.07 1.39 11.07 84.13 0.93 2.32 16 19 N -0.51 -15.68 10.30 -195.74 -2.02 -17.70 16 20 C 0.12 4.06 10.49 85.22 0.89 4.95 16 21 C -0.10 -2.95 5.76 -21.14 -0.12 -3.07 16 22 N -0.73 -35.53 4.49 -322.94 -1.45 -36.98 16 23 C -0.22 -12.37 9.93 84.03 0.83 -11.54 16 24 H 0.07 3.75 7.83 -2.91 -0.02 3.72 16 25 C -0.08 -4.46 5.50 84.86 0.47 -3.99 16 26 N -0.97 -60.91 13.06 21.65 0.28 -60.63 16 27 Si 0.95 48.26 29.55 68.60 2.03 50.29 16 28 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 29 H -0.30 -15.73 7.11 99.48 0.71 -15.02 16 30 H -0.29 -14.57 7.11 99.48 0.71 -13.87 16 31 H 0.04 1.36 8.14 -2.38 -0.02 1.34 16 32 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 36 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.04 1.13 8.14 -2.38 -0.02 1.11 16 38 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 39 H 0.41 7.59 6.67 -92.71 -0.62 6.97 16 40 H 0.17 2.30 6.42 -2.91 -0.02 2.28 16 41 H 0.19 1.40 8.06 -2.91 -0.02 1.38 16 42 H 0.19 1.28 8.06 -2.91 -0.02 1.26 16 43 H 0.18 2.54 8.06 -2.91 -0.02 2.52 16 44 H 0.17 6.70 4.97 -2.95 -0.01 6.69 16 45 H 0.37 19.72 7.80 -92.71 -0.72 19.00 16 46 H 0.25 15.24 8.31 -92.71 -0.77 14.47 16 Total: -1.00 -78.48 386.45 3.28 -75.20 By element: Atomic # 1 Polarization: 33.84 SS G_CDS: -0.31 Total: 33.53 kcal Atomic # 6 Polarization: -4.80 SS G_CDS: 5.98 Total: 1.18 kcal Atomic # 7 Polarization: -130.37 SS G_CDS: -5.14 Total: -135.51 kcal Atomic # 8 Polarization: -23.30 SS G_CDS: -0.05 Total: -23.36 kcal Atomic # 9 Polarization: -2.10 SS G_CDS: 0.78 Total: -1.32 kcal Atomic # 14 Polarization: 48.26 SS G_CDS: 2.03 Total: 50.29 kcal Total: -78.48 3.28 -75.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134388420.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.070 kcal (2) G-P(sol) polarization free energy of solvation -78.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds