Wall clock time and date at job start Wed Apr 1 2020 03:23:04
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 H 1.08996 * 109.46772 * 2 1
4 4 C 1.53003 * 109.47351 * 239.99259 * 2 1 3
5 5 C 1.53000 * 109.46777 * 174.99769 * 4 2 1
6 6 H 1.09000 * 109.46861 * 55.00954 * 5 4 2
7 7 C 1.53002 * 109.46645 * 174.99895 * 5 4 2
8 8 N 1.46492 * 109.47610 * 295.00396 * 5 4 2
9 9 C 1.34772 * 120.00357 * 155.00133 * 8 5 4
10 10 O 1.21591 * 119.99993 * 0.02562 * 9 8 5
11 11 C 1.47581 * 120.00379 * 179.97438 * 9 8 5
12 12 C 1.38656 * 120.41590 * 354.11834 * 11 9 8
13 13 C 1.39248 * 120.72080 * 179.71220 * 12 11 9
14 14 F 1.35099 * 119.43901 * 180.28727 * 13 12 11
15 15 C 1.36555 * 121.13135 * 0.57015 * 13 12 11
16 16 C 1.40285 * 119.91768 * 359.71855 * 15 13 12
17 17 C 1.40712 * 122.07655 * 179.97438 * 16 15 13
18 18 C 1.36241 * 118.66916 * 180.02562 * 17 16 15
19 19 N 1.32522 * 121.83731 * 359.97438 * 18 17 16
20 20 C 1.31334 * 122.71866 * 0.02562 * 19 18 17
21 21 C 1.40103 * 119.93030 * 0.02562 * 20 19 18
22 22 N 1.46506 * 109.46743 * 119.99420 * 2 1 3
23 23 C 1.36933 * 120.00117 * 275.00124 * 22 2 1
24 24 H 1.08006 * 120.00051 * 0.02562 * 23 22 2
25 25 C 1.38806 * 120.00137 * 179.72650 * 23 22 2
26 26 N 1.31622 * 119.99976 * 0.27879 * 25 23 22
27 27 Si 1.86797 * 120.00218 * 180.27318 * 25 23 22
28 28 H 1.48502 * 109.46769 * 60.00341 * 27 25 23
29 29 H 1.48500 * 109.47016 * 179.97438 * 27 25 23
30 30 H 1.48501 * 109.47375 * 300.00163 * 27 25 23
31 31 H 1.09010 * 109.46909 * 180.02562 * 1 2 3
32 32 H 1.08998 * 109.47381 * 300.00321 * 1 2 3
33 33 H 1.09002 * 109.46803 * 60.00604 * 1 2 3
34 34 H 1.09001 * 109.47068 * 295.00152 * 4 2 1
35 35 H 1.08999 * 109.46410 * 55.00558 * 4 2 1
36 36 H 1.09009 * 109.46841 * 60.00856 * 7 5 4
37 37 H 1.09002 * 109.46902 * 180.02562 * 7 5 4
38 38 H 1.08998 * 109.47890 * 300.00456 * 7 5 4
39 39 H 0.97007 * 120.00109 * 335.00245 * 8 5 4
40 40 H 1.08000 * 119.63480 * 359.97438 * 12 11 9
41 41 H 1.08000 * 120.04372 * 179.74248 * 15 13 12
42 42 H 1.08001 * 120.66497 * 0.03767 * 17 16 15
43 43 H 1.08005 * 119.08101 * 179.97438 * 18 17 16
44 44 H 1.08001 * 120.03200 * 180.02562 * 20 19 18
45 45 H 0.97003 * 119.99520 * 95.00723 * 22 2 1
46 46 H 0.97001 * 119.99969 * 179.97438 * 26 25 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0276 0.0000
4 6 2.0401 -0.7214 -1.2492
5 6 3.5649 -0.6133 -1.3135
6 1 3.9954 -0.9923 -0.3866
7 6 4.0852 -1.4385 -2.4922
8 7 3.9480 0.7892 -1.4923
9 6 5.1612 1.2135 -1.0866
10 8 5.9379 0.4319 -0.5725
11 6 5.5473 2.6264 -1.2673
12 6 4.7206 3.4969 -1.9610
13 6 5.0759 4.8326 -2.1301
14 9 4.2482 5.6595 -2.8056
15 6 6.2494 5.3198 -1.6298
16 6 7.1166 4.4702 -0.9268
17 6 8.3368 4.9238 -0.3926
18 6 9.1262 4.0386 0.2777
19 7 8.7750 2.7708 0.4377
20 6 7.6517 2.2803 -0.0339
21 6 6.7693 3.1085 -0.7399
22 7 2.0183 -0.6905 1.1963
23 6 2.1490 -0.0073 2.3758
24 1 1.8917 1.0405 2.4243
25 6 2.6062 -0.6629 3.5107
26 7 2.9193 -1.9400 3.4517
27 14 2.7773 0.2672 5.1215
28 1 1.4530 0.8037 5.5263
29 1 3.2805 -0.6527 6.1732
30 1 3.7336 1.3896 4.9460
31 1 -0.3633 -1.0278 0.0005
32 1 -0.3634 0.5139 0.8899
33 1 -0.3633 0.5138 -0.8901
34 1 1.7517 -1.7717 -1.2054
35 1 1.6055 -0.2619 -2.1369
36 1 3.6547 -1.0596 -3.4192
37 1 5.1716 -1.3619 -2.5378
38 1 3.8002 -2.4821 -2.3592
39 1 3.3285 1.4128 -1.9028
40 1 3.7890 3.1359 -2.3711
41 1 6.5094 6.3579 -1.7748
42 1 8.6413 5.9532 -0.5113
43 1 10.0644 4.3795 0.6901
44 1 7.4085 1.2397 0.1223
45 1 2.2490 -1.6317 1.1528
46 1 3.2392 -2.3981 4.2446
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001134388421.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:23:04
Heat of formation + Delta-G solvation = -14.844595 kcal
Electronic energy + Delta-G solvation = -30342.095816 eV
Core-core repulsion = 26146.456500 eV
Total energy + Delta-G solvation = -4195.639316 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 345.159 amu
Computer time = 5.07 seconds
Orbital eigenvalues (eV)
-49.31171 -41.23224 -39.55966 -37.27700 -36.87739 -34.61821 -33.29002 -32.22901
-31.15905 -30.92574 -29.55238 -28.60075 -26.37961 -25.11908 -23.84513 -23.66018
-23.50557 -21.34282 -20.66784 -19.78937 -18.71867 -18.09589 -17.49466 -17.21357
-16.44791 -16.31071 -16.04727 -15.67857 -15.25922 -15.00974 -14.86327 -14.59999
-14.11742 -14.00194 -13.74086 -13.51998 -13.41933 -13.22860 -13.02431 -12.74666
-12.60572 -12.21490 -12.06146 -11.93953 -11.89859 -11.76308 -11.62489 -11.07624
-10.81488 -10.63312 -10.48887 -10.41643 -10.25609 -9.93298 -9.80210 -9.61271
-9.46286 -9.24177 -8.92662 -8.86723 -8.37005 -6.92187 -5.72239 -3.00469
-0.22013 0.51013 1.42086 2.37510 3.05219 3.21861 3.46922 3.52040
3.52396 3.72613 3.88356 4.15258 4.24904 4.49852 4.53205 4.60294
4.63138 4.69041 4.92999 5.04162 5.16487 5.30247 5.35026 5.42247
5.44850 5.52220 5.60962 5.63611 5.64061 5.80843 5.86161 5.91069
5.91880 5.98139 6.09068 6.25423 6.28385 6.32566 6.40078 6.51870
6.53476 6.68778 6.73903 6.87235 7.04994 7.54534 7.72611 7.91278
8.26903 8.46087 9.57604 10.13929 10.48243 11.50247
Molecular weight = 345.16amu
Principal moments of inertia in cm(-1)
A = 0.008713 B = 0.003897 C = 0.003342
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3212.727967 B = 7183.865799 C = 8376.348114
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.166 4.166
2 C 0.171 3.829
3 H 0.045 0.955
4 C -0.132 4.132
5 C 0.142 3.858
6 H 0.111 0.889
7 C -0.162 4.162
8 N -0.703 5.703
9 C 0.560 3.440
10 O -0.516 6.516
11 C -0.052 4.052
12 C -0.122 4.122
13 C 0.119 3.881
14 F -0.133 7.133
15 C -0.133 4.133
16 C -0.003 4.003
17 C -0.171 4.171
18 C 0.090 3.910
19 N -0.490 5.490
20 C 0.160 3.840
21 C -0.094 4.094
22 N -0.720 5.720
23 C -0.237 4.237
24 H 0.066 0.934
25 C -0.009 4.009
26 N -0.930 5.930
27 Si 0.901 3.099
28 H -0.287 1.287
29 H -0.291 1.291
30 H -0.287 1.287
31 H 0.046 0.954
32 H 0.052 0.948
33 H 0.034 0.966
34 H 0.078 0.922
35 H 0.062 0.938
36 H 0.050 0.950
37 H 0.058 0.942
38 H 0.067 0.933
39 H 0.395 0.605
40 H 0.146 0.854
41 H 0.147 0.853
42 H 0.140 0.860
43 H 0.154 0.846
44 H 0.205 0.795
45 H 0.383 0.617
46 H 0.255 0.745
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.522 12.635 -16.372 21.405
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.226 4.226
2 C 0.061 3.939
3 H 0.063 0.937
4 C -0.170 4.170
5 C 0.039 3.961
6 H 0.129 0.871
7 C -0.220 4.220
8 N -0.353 5.353
9 C 0.346 3.654
10 O -0.393 6.393
11 C -0.058 4.058
12 C -0.142 4.142
13 C 0.099 3.901
14 F -0.111 7.111
15 C -0.152 4.152
16 C -0.009 4.009
17 C -0.191 4.191
18 C -0.053 4.053
19 N -0.199 5.199
20 C -0.009 4.009
21 C -0.097 4.097
22 N -0.362 5.362
23 C -0.368 4.368
24 H 0.084 0.916
25 C -0.205 4.205
26 N -0.578 5.578
27 Si 0.732 3.268
28 H -0.214 1.214
29 H -0.217 1.217
30 H -0.214 1.214
31 H 0.065 0.935
32 H 0.071 0.929
33 H 0.053 0.947
34 H 0.097 0.903
35 H 0.080 0.920
36 H 0.069 0.931
37 H 0.077 0.923
38 H 0.086 0.914
39 H 0.230 0.770
40 H 0.163 0.837
41 H 0.165 0.835
42 H 0.158 0.842
43 H 0.172 0.828
44 H 0.221 0.779
45 H 0.217 0.783
46 H 0.065 0.935
Dipole moment (debyes) X Y Z Total
from point charges 6.710 11.741 -15.396 20.492
hybrid contribution -1.059 1.478 0.176 1.827
sum 5.651 13.219 -15.220 20.936
Atomic orbital electron populations
1.22463 0.99494 1.00856 0.99785 1.20227 0.91647 0.95470 0.86585
0.93748 1.22189 0.93448 1.02501 0.98907 1.21155 0.95418 0.79256
1.00294 0.87123 1.22191 1.01642 1.00320 0.97831 1.45912 1.15712
1.12235 1.61423 1.17820 0.82635 0.86296 0.78614 1.90614 1.50428
1.55470 1.42831 1.19901 0.93992 0.94157 0.97710 1.21353 1.00801
0.91817 1.00227 1.17193 0.89397 0.87991 0.95553 1.91549 1.70895
1.71203 1.77470 1.21015 0.93385 1.01065 0.99737 1.17817 0.94750
0.92147 0.96180 1.21808 0.94431 1.01526 1.01290 1.22407 0.99241
0.89003 0.94671 1.67753 1.18129 1.14832 1.19136 1.24753 0.86548
1.02208 0.87385 1.18913 0.95705 0.94110 1.00977 1.42383 1.78001
1.10557 1.05231 1.19085 1.36840 0.93582 0.87305 0.91637 1.24671
1.02119 0.95888 0.97844 1.69629 1.50810 1.08540 1.28853 0.86364
0.77645 0.78770 0.83996 1.21436 1.21651 1.21356 0.93477 0.92892
0.94731 0.90317 0.91979 0.93061 0.92330 0.91441 0.77017 0.83669
0.83532 0.84203 0.82823 0.77867 0.78294 0.93504
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -2.80 9.49 37.16 0.35 -2.44 16
2 C 0.17 3.09 2.84 -67.93 -0.19 2.89 16
3 H 0.04 0.82 7.56 -51.93 -0.39 0.43 16
4 C -0.13 -1.86 4.29 -26.73 -0.11 -1.97 16
5 C 0.14 2.10 2.52 -67.93 -0.17 1.93 16
6 H 0.11 2.18 7.05 -51.93 -0.37 1.81 16
7 C -0.16 -2.01 9.48 37.16 0.35 -1.65 16
8 N -0.70 -9.36 4.40 -54.84 -0.24 -9.60 16
9 C 0.56 8.60 7.70 -12.45 -0.10 8.50 16
10 O -0.52 -9.62 13.13 5.29 0.07 -9.55 16
11 C -0.05 -0.69 5.90 -104.67 -0.62 -1.31 16
12 C -0.12 -1.29 9.48 -39.05 -0.37 -1.66 16
13 C 0.12 1.22 7.22 -39.81 -0.29 0.93 16
14 F -0.13 -1.34 17.24 2.25 0.04 -1.30 16
15 C -0.13 -1.29 9.75 -39.42 -0.38 -1.68 16
16 C 0.00 -0.04 5.74 -106.84 -0.61 -0.65 16
17 C -0.17 -1.72 9.88 -39.37 -0.39 -2.11 16
18 C 0.09 1.04 11.07 -17.97 -0.20 0.84 16
19 N -0.49 -7.36 10.30 -13.22 -0.14 -7.49 16
20 C 0.16 2.51 10.49 -17.07 -0.18 2.33 16
21 C -0.09 -1.32 5.76 -106.59 -0.61 -1.93 16
22 N -0.72 -17.12 4.49 -53.42 -0.24 -17.36 16
23 C -0.24 -6.47 9.93 -15.06 -0.15 -6.62 16
24 H 0.07 1.76 7.83 -52.48 -0.41 1.35 16
25 C -0.01 -0.26 5.50 -17.43 -0.10 -0.35 16
26 N -0.93 -28.05 13.06 55.49 0.72 -27.32 16
27 Si 0.90 22.86 29.55 -169.99 -5.02 17.84 16
28 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16
29 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16
30 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16
31 H 0.05 0.80 8.14 -51.92 -0.42 0.38 16
32 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16
33 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16
34 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16
35 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16
36 H 0.05 0.53 8.14 -51.92 -0.42 0.11 16
37 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16
38 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16
39 H 0.39 4.08 6.67 -40.82 -0.27 3.81 16
40 H 0.15 1.16 6.42 -52.49 -0.34 0.82 16
41 H 0.15 1.02 8.06 -52.49 -0.42 0.59 16
42 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16
43 H 0.15 1.28 8.06 -52.48 -0.42 0.86 16
44 H 0.21 3.53 4.97 -52.49 -0.26 3.27 16
45 H 0.38 9.78 7.80 -40.82 -0.32 9.46 16
46 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16
LS Contribution 386.45 15.07 5.82 5.82
Total: -1.00 -32.76 386.45 -8.90 -41.66
By element:
Atomic # 1 Polarization: 18.41 SS G_CDS: -6.14 Total: 12.27 kcal
Atomic # 6 Polarization: -1.18 SS G_CDS: -3.77 Total: -4.95 kcal
Atomic # 7 Polarization: -61.89 SS G_CDS: 0.11 Total: -61.78 kcal
Atomic # 8 Polarization: -9.62 SS G_CDS: 0.07 Total: -9.55 kcal
Atomic # 9 Polarization: -1.34 SS G_CDS: 0.04 Total: -1.30 kcal
Atomic # 14 Polarization: 22.86 SS G_CDS: -5.02 Total: 17.84 kcal
Total LS contribution 5.82 Total: 5.82 kcal
Total: -32.76 -8.90 -41.66 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001134388421.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 26.811 kcal
(2) G-P(sol) polarization free energy of solvation -32.759 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.947 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.897 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.656 kcal
(6) G-S(sol) free energy of system = (1) + (5) -14.845 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 5.07 seconds