Wall clock time and date at job start Wed Apr 1 2020 03:23:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 109.46627 * 2 1 4 4 C 1.53001 * 109.47234 * 240.00133 * 2 1 3 5 5 C 1.52996 * 109.47267 * 174.99996 * 4 2 1 6 6 H 1.09003 * 109.47064 * 305.00438 * 5 4 2 7 7 C 1.52998 * 109.47680 * 184.99631 * 5 4 2 8 8 N 1.46506 * 109.47117 * 64.99364 * 5 4 2 9 9 C 1.34771 * 120.00088 * 205.00097 * 8 5 4 10 10 O 1.21611 * 120.00328 * 0.02562 * 9 8 5 11 11 C 1.47346 * 119.99904 * 180.02562 * 9 8 5 12 12 C 1.39187 * 120.77045 * 269.99913 * 11 9 8 13 13 F 1.35106 * 119.70545 * 0.02562 * 12 11 9 14 14 C 1.39281 * 120.58980 * 179.97438 * 12 11 9 15 15 C 1.36022 * 121.82603 * 359.97438 * 14 12 11 16 16 C 1.40369 * 120.53650 * 0.02672 * 15 14 12 17 17 C 1.40641 * 122.23486 * 179.97438 * 16 15 14 18 18 C 1.36315 * 118.64345 * 179.18151 * 17 16 15 19 19 N 1.32483 * 121.89271 * 0.81147 * 18 17 16 20 20 C 1.31381 * 122.68777 * 359.44051 * 19 18 17 21 21 C 1.39986 * 119.83901 * 359.97438 * 20 19 18 22 22 N 1.46499 * 109.46833 * 119.99783 * 2 1 3 23 23 C 1.36938 * 119.99845 * 275.00102 * 22 2 1 24 24 H 1.07994 * 120.00161 * 359.97438 * 23 22 2 25 25 C 1.38810 * 119.99743 * 180.02562 * 23 22 2 26 26 N 1.31617 * 120.00137 * 359.97438 * 25 23 22 27 27 Si 1.86800 * 120.00265 * 179.97438 * 25 23 22 28 28 H 1.48510 * 109.46920 * 59.99406 * 27 25 23 29 29 H 1.48492 * 109.47337 * 179.97438 * 27 25 23 30 30 H 1.48499 * 109.47059 * 300.00174 * 27 25 23 31 31 H 1.08995 * 109.47159 * 299.99960 * 1 2 3 32 32 H 1.09007 * 109.46868 * 60.00320 * 1 2 3 33 33 H 1.08999 * 109.46906 * 179.97438 * 1 2 3 34 34 H 1.09001 * 109.47020 * 54.99558 * 4 2 1 35 35 H 1.08999 * 109.46895 * 295.00014 * 4 2 1 36 36 H 1.09000 * 109.46859 * 300.00209 * 7 5 4 37 37 H 1.09002 * 109.46717 * 59.99885 * 7 5 4 38 38 H 1.08991 * 109.47387 * 179.97438 * 7 5 4 39 39 H 0.96995 * 119.99608 * 25.00453 * 8 5 4 40 40 H 1.07998 * 119.08898 * 179.97438 * 14 12 11 41 41 H 1.08003 * 119.73206 * 179.97438 * 15 14 12 42 42 H 1.07999 * 120.67619 * 359.95656 * 17 16 15 43 43 H 1.07999 * 119.04884 * 180.23143 * 18 17 16 44 44 H 1.08000 * 120.07904 * 180.02562 * 20 19 18 45 45 H 0.96993 * 119.99935 * 95.00587 * 22 2 1 46 46 H 0.97008 * 120.00135 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 3.5649 -0.6133 -1.3137 6 1 3.8571 0.4359 -1.2677 7 6 4.0647 -1.2250 -2.6240 8 7 4.1537 -1.3341 -0.1823 9 6 5.3748 -0.9909 0.2734 10 8 5.9876 -0.0827 -0.2542 11 6 5.9672 -1.7163 1.4109 12 6 5.7522 -1.2887 2.7179 13 9 4.9913 -0.1963 2.9484 14 6 6.3136 -1.9775 3.7904 15 6 7.0851 -3.0829 3.6082 16 6 7.3421 -3.5682 2.3164 17 6 8.1348 -4.7070 2.0868 18 6 8.3229 -5.1242 0.8027 19 7 7.7949 -4.4794 -0.2272 20 6 7.0494 -3.4068 -0.0862 21 6 6.7865 -2.9046 1.1938 22 7 2.0183 -0.6906 1.1962 23 6 2.1490 -0.0074 2.3758 24 1 1.8926 1.0406 2.4241 25 6 2.6122 -0.6616 3.5090 26 7 2.9252 -1.9386 3.4500 27 14 2.7912 0.2704 5.1180 28 1 1.4689 0.8074 5.5288 29 1 3.3000 -0.6480 6.1681 30 1 3.7464 1.3929 4.9362 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 -0.3633 -1.0277 -0.0005 34 1 1.6054 -0.2617 -2.1370 35 1 1.7517 -1.7715 -1.2056 36 1 3.7724 -2.2741 -2.6698 37 1 3.6265 -0.6886 -3.4657 38 1 5.1509 -1.1477 -2.6700 39 1 3.6648 -2.0583 0.2387 40 1 6.1314 -1.6243 4.7946 41 1 7.5040 -3.5908 4.4643 42 1 8.5749 -5.2474 2.9117 43 1 8.9273 -6.0002 0.6191 44 1 6.6397 -2.9143 -0.9556 45 1 2.2491 -1.6317 1.1527 46 1 3.2485 -2.3959 4.2421 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134402873.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:23:10 Heat of formation + Delta-G solvation = -2.057195 kcal Electronic energy + Delta-G solvation = -32246.624300 eV Core-core repulsion = 28051.539487 eV Total energy + Delta-G solvation = -4195.084813 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 7.88 seconds Orbital eigenvalues (eV) -48.08894 -40.50064 -39.15132 -36.95620 -36.48017 -34.20733 -32.73949 -32.20435 -30.99366 -30.46676 -29.14446 -28.51885 -26.36473 -24.50033 -23.72806 -23.31506 -23.15501 -21.02492 -20.28195 -19.68848 -18.18112 -17.49363 -17.24002 -16.97176 -16.16898 -15.89317 -15.14763 -15.00804 -14.69401 -14.64580 -14.39236 -13.99625 -13.83896 -13.78295 -13.68110 -13.41158 -13.28890 -12.86104 -12.65185 -12.46975 -12.16386 -11.97713 -11.81185 -11.68427 -11.51627 -11.43914 -11.37953 -11.02567 -10.77701 -10.70161 -10.39769 -10.32340 -9.96559 -9.81014 -9.73157 -9.45125 -9.31936 -8.97065 -8.72938 -8.42148 -7.71394 -6.98938 -5.85542 -3.06049 0.41903 1.10892 1.93686 3.08031 3.15650 3.38153 3.41085 3.46619 3.74515 4.20832 4.49855 4.53760 4.66597 4.69599 4.89575 5.00130 5.07199 5.14148 5.28422 5.34632 5.40997 5.49392 5.52556 5.66144 5.72410 5.79704 5.86901 5.90466 5.95077 5.98433 6.02144 6.11776 6.21389 6.31215 6.33844 6.35104 6.40226 6.46230 6.53173 6.56734 6.75261 6.81859 7.01109 7.08737 7.11346 7.62995 8.09440 8.10118 8.31318 8.77673 9.43642 9.96751 10.32274 11.35086 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.009804 B = 0.006095 C = 0.004192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2855.420042 B = 4592.754238 C = 6677.877706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.168 3.832 3 H 0.049 0.951 4 C -0.133 4.133 5 C 0.148 3.852 6 H 0.084 0.916 7 C -0.163 4.163 8 N -0.685 5.685 9 C 0.585 3.415 10 O -0.550 6.550 11 C -0.160 4.160 12 C 0.197 3.803 13 F -0.089 7.089 14 C -0.118 4.118 15 C -0.081 4.081 16 C -0.041 4.041 17 C -0.144 4.144 18 C 0.059 3.941 19 N -0.483 5.483 20 C 0.136 3.864 21 C -0.051 4.051 22 N -0.715 5.715 23 C -0.210 4.210 24 H 0.066 0.934 25 C -0.001 4.001 26 N -0.925 5.925 27 Si 0.894 3.106 28 H -0.293 1.293 29 H -0.292 1.292 30 H -0.284 1.284 31 H 0.052 0.948 32 H 0.035 0.965 33 H 0.045 0.955 34 H 0.075 0.925 35 H 0.065 0.935 36 H 0.055 0.945 37 H 0.061 0.939 38 H 0.058 0.942 39 H 0.407 0.593 40 H 0.134 0.866 41 H 0.135 0.865 42 H 0.136 0.864 43 H 0.150 0.850 44 H 0.156 0.844 45 H 0.378 0.622 46 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.672 -4.843 -4.818 8.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.058 3.942 3 H 0.067 0.933 4 C -0.172 4.172 5 C 0.043 3.957 6 H 0.102 0.898 7 C -0.222 4.222 8 N -0.336 5.336 9 C 0.370 3.630 10 O -0.428 6.428 11 C -0.167 4.167 12 C 0.175 3.825 13 F -0.067 7.067 14 C -0.138 4.138 15 C -0.100 4.100 16 C -0.047 4.047 17 C -0.164 4.164 18 C -0.086 4.086 19 N -0.191 5.191 20 C -0.033 4.033 21 C -0.054 4.054 22 N -0.357 5.357 23 C -0.340 4.340 24 H 0.084 0.916 25 C -0.196 4.196 26 N -0.574 5.574 27 Si 0.726 3.274 28 H -0.220 1.220 29 H -0.218 1.218 30 H -0.211 1.211 31 H 0.071 0.929 32 H 0.054 0.946 33 H 0.064 0.936 34 H 0.093 0.907 35 H 0.083 0.917 36 H 0.074 0.926 37 H 0.080 0.920 38 H 0.077 0.923 39 H 0.245 0.755 40 H 0.152 0.848 41 H 0.153 0.847 42 H 0.154 0.846 43 H 0.167 0.833 44 H 0.173 0.827 45 H 0.213 0.787 46 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 6.239 -4.441 -5.849 9.637 hybrid contribution -0.628 0.340 2.368 2.473 sum 5.611 -4.101 -3.481 7.773 Atomic orbital electron populations 1.22410 0.99199 1.00728 0.99943 1.20311 0.91734 0.95774 0.86363 0.93320 1.22196 0.93860 1.01701 0.99431 1.20877 0.92628 0.97364 0.84851 0.89755 1.22217 1.01834 1.00982 0.97150 1.45985 1.17271 1.37197 1.33167 1.17556 0.81412 0.82328 0.81688 1.90751 1.62430 1.30516 1.59143 1.20520 1.04829 0.98322 0.93054 1.17481 0.88413 0.85051 0.91516 1.91680 1.70787 1.49435 1.94772 1.20807 0.97765 0.96336 0.98912 1.20665 0.97987 0.95573 0.95764 1.17982 0.97806 0.95753 0.93177 1.21838 0.99364 0.96396 0.98766 1.22078 0.98850 0.99358 0.88311 1.67431 1.08646 1.07706 1.35298 1.22863 0.93571 0.91723 0.95151 1.19414 0.97394 0.94028 0.94581 1.42515 1.77530 1.10180 1.05458 1.19188 1.34039 0.93643 0.87144 0.91567 1.24488 1.01983 0.95836 0.97336 1.69625 1.50896 1.08184 1.28673 0.86529 0.77680 0.79180 0.84015 1.22039 1.21780 1.21108 0.92892 0.94552 0.93609 0.90664 0.91668 0.92626 0.91961 0.92317 0.75477 0.84775 0.84676 0.84608 0.83309 0.82693 0.78664 0.93666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.70 9.49 37.16 0.35 -2.35 16 2 C 0.17 3.01 2.89 -67.93 -0.20 2.81 16 3 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 4 C -0.13 -1.93 4.43 -26.73 -0.12 -2.05 16 5 C 0.15 2.32 2.57 -67.93 -0.17 2.14 16 6 H 0.08 1.51 7.58 -51.93 -0.39 1.11 16 7 C -0.16 -2.14 9.48 37.16 0.35 -1.79 16 8 N -0.68 -12.27 3.80 -54.91 -0.21 -12.48 16 9 C 0.58 11.77 5.83 -12.56 -0.07 11.70 16 10 O -0.55 -12.39 16.77 5.27 0.09 -12.30 16 11 C -0.16 -3.13 5.81 -102.75 -0.60 -3.73 16 12 C 0.20 4.02 6.24 -38.84 -0.24 3.77 16 13 F -0.09 -2.09 11.80 2.25 0.03 -2.06 16 14 C -0.12 -2.03 9.86 -39.99 -0.39 -2.42 16 15 C -0.08 -1.18 9.75 -39.58 -0.39 -1.56 16 16 C -0.04 -0.64 5.75 -106.85 -0.61 -1.25 16 17 C -0.14 -1.81 9.89 -39.37 -0.39 -2.20 16 18 C 0.06 0.77 11.07 -17.96 -0.20 0.57 16 19 N -0.48 -7.49 10.30 -13.23 -0.14 -7.62 16 20 C 0.14 2.23 10.73 -17.09 -0.18 2.05 16 21 C -0.05 -0.89 5.90 -104.81 -0.62 -1.51 16 22 N -0.71 -15.43 3.84 -53.42 -0.21 -15.64 16 23 C -0.21 -5.21 9.52 -15.06 -0.14 -5.35 16 24 H 0.07 1.70 7.83 -52.49 -0.41 1.29 16 25 C 0.00 -0.03 3.19 -17.43 -0.06 -0.08 16 26 N -0.93 -23.30 11.76 55.49 0.65 -22.64 16 27 Si 0.89 21.24 28.15 -169.99 -4.78 16.45 16 28 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 29 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 30 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 31 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 32 H 0.04 0.51 8.14 -51.92 -0.42 0.08 16 33 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 35 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.41 7.55 6.49 -40.82 -0.27 7.28 16 40 H 0.13 2.14 8.06 -52.49 -0.42 1.71 16 41 H 0.14 1.46 8.06 -52.48 -0.42 1.03 16 42 H 0.14 1.24 8.06 -52.49 -0.42 0.81 16 43 H 0.15 1.45 8.06 -52.49 -0.42 1.02 16 44 H 0.16 2.45 7.37 -52.49 -0.39 2.06 16 45 H 0.38 8.46 5.70 -40.82 -0.23 8.22 16 46 H 0.25 6.42 8.31 -40.82 -0.34 6.08 16 LS Contribution 378.87 15.07 5.71 5.71 Total: -1.00 -28.57 378.87 -8.85 -37.42 By element: Atomic # 1 Polarization: 20.72 SS G_CDS: -6.32 Total: 14.41 kcal Atomic # 6 Polarization: 2.43 SS G_CDS: -3.68 Total: -1.25 kcal Atomic # 7 Polarization: -58.48 SS G_CDS: 0.10 Total: -58.38 kcal Atomic # 8 Polarization: -12.39 SS G_CDS: 0.09 Total: -12.30 kcal Atomic # 9 Polarization: -2.09 SS G_CDS: 0.03 Total: -2.06 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -4.78 Total: 16.45 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -28.57 -8.85 -37.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134402873.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.364 kcal (2) G-P(sol) polarization free energy of solvation -28.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.88 seconds