Wall clock time and date at job start Wed Apr 1 2020 03:23:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 109.46627 * 2 1 4 4 C 1.53001 * 109.47234 * 240.00133 * 2 1 3 5 5 C 1.52996 * 109.47267 * 174.99996 * 4 2 1 6 6 H 1.09003 * 109.47064 * 305.00438 * 5 4 2 7 7 C 1.52998 * 109.47680 * 184.99631 * 5 4 2 8 8 N 1.46506 * 109.47117 * 64.99364 * 5 4 2 9 9 C 1.34771 * 120.00088 * 205.00097 * 8 5 4 10 10 O 1.21611 * 120.00328 * 0.02562 * 9 8 5 11 11 C 1.47346 * 119.99904 * 180.02562 * 9 8 5 12 12 C 1.39187 * 120.77045 * 269.99913 * 11 9 8 13 13 F 1.35106 * 119.70545 * 0.02562 * 12 11 9 14 14 C 1.39281 * 120.58980 * 179.97438 * 12 11 9 15 15 C 1.36022 * 121.82603 * 359.97438 * 14 12 11 16 16 C 1.40369 * 120.53650 * 0.02672 * 15 14 12 17 17 C 1.40641 * 122.23486 * 179.97438 * 16 15 14 18 18 C 1.36315 * 118.64345 * 179.18151 * 17 16 15 19 19 N 1.32483 * 121.89271 * 0.81147 * 18 17 16 20 20 C 1.31381 * 122.68777 * 359.44051 * 19 18 17 21 21 C 1.39986 * 119.83901 * 359.97438 * 20 19 18 22 22 N 1.46499 * 109.46833 * 119.99783 * 2 1 3 23 23 C 1.36938 * 119.99845 * 275.00102 * 22 2 1 24 24 H 1.07994 * 120.00161 * 359.97438 * 23 22 2 25 25 C 1.38810 * 119.99743 * 180.02562 * 23 22 2 26 26 N 1.31617 * 120.00137 * 359.97438 * 25 23 22 27 27 Si 1.86800 * 120.00265 * 179.97438 * 25 23 22 28 28 H 1.48510 * 109.46920 * 59.99406 * 27 25 23 29 29 H 1.48492 * 109.47337 * 179.97438 * 27 25 23 30 30 H 1.48499 * 109.47059 * 300.00174 * 27 25 23 31 31 H 1.08995 * 109.47159 * 299.99960 * 1 2 3 32 32 H 1.09007 * 109.46868 * 60.00320 * 1 2 3 33 33 H 1.08999 * 109.46906 * 179.97438 * 1 2 3 34 34 H 1.09001 * 109.47020 * 54.99558 * 4 2 1 35 35 H 1.08999 * 109.46895 * 295.00014 * 4 2 1 36 36 H 1.09000 * 109.46859 * 300.00209 * 7 5 4 37 37 H 1.09002 * 109.46717 * 59.99885 * 7 5 4 38 38 H 1.08991 * 109.47387 * 179.97438 * 7 5 4 39 39 H 0.96995 * 119.99608 * 25.00453 * 8 5 4 40 40 H 1.07998 * 119.08898 * 179.97438 * 14 12 11 41 41 H 1.08003 * 119.73206 * 179.97438 * 15 14 12 42 42 H 1.07999 * 120.67619 * 359.95656 * 17 16 15 43 43 H 1.07999 * 119.04884 * 180.23143 * 18 17 16 44 44 H 1.08000 * 120.07904 * 180.02562 * 20 19 18 45 45 H 0.96993 * 119.99935 * 95.00587 * 22 2 1 46 46 H 0.97008 * 120.00135 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 3.5649 -0.6133 -1.3137 6 1 3.8571 0.4359 -1.2677 7 6 4.0647 -1.2250 -2.6240 8 7 4.1537 -1.3341 -0.1823 9 6 5.3748 -0.9909 0.2734 10 8 5.9876 -0.0827 -0.2542 11 6 5.9672 -1.7163 1.4109 12 6 5.7522 -1.2887 2.7179 13 9 4.9913 -0.1963 2.9484 14 6 6.3136 -1.9775 3.7904 15 6 7.0851 -3.0829 3.6082 16 6 7.3421 -3.5682 2.3164 17 6 8.1348 -4.7070 2.0868 18 6 8.3229 -5.1242 0.8027 19 7 7.7949 -4.4794 -0.2272 20 6 7.0494 -3.4068 -0.0862 21 6 6.7865 -2.9046 1.1938 22 7 2.0183 -0.6906 1.1962 23 6 2.1490 -0.0074 2.3758 24 1 1.8926 1.0406 2.4241 25 6 2.6122 -0.6616 3.5090 26 7 2.9252 -1.9386 3.4500 27 14 2.7912 0.2704 5.1180 28 1 1.4689 0.8074 5.5288 29 1 3.3000 -0.6480 6.1681 30 1 3.7464 1.3929 4.9362 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 -0.3633 -1.0277 -0.0005 34 1 1.6054 -0.2617 -2.1370 35 1 1.7517 -1.7715 -1.2056 36 1 3.7724 -2.2741 -2.6698 37 1 3.6265 -0.6886 -3.4657 38 1 5.1509 -1.1477 -2.6700 39 1 3.6648 -2.0583 0.2387 40 1 6.1314 -1.6243 4.7946 41 1 7.5040 -3.5908 4.4643 42 1 8.5749 -5.2474 2.9117 43 1 8.9273 -6.0002 0.6191 44 1 6.6397 -2.9143 -0.9556 45 1 2.2491 -1.6317 1.1527 46 1 3.2485 -2.3959 4.2421 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134402873.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:23:07 Heat of formation + Delta-G solvation = -18.930760 kcal Electronic energy + Delta-G solvation = -32247.355993 eV Core-core repulsion = 28051.539487 eV Total energy + Delta-G solvation = -4195.816506 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 3.05 seconds Orbital eigenvalues (eV) -49.71110 -41.75896 -40.58946 -38.38099 -37.80738 -35.77097 -34.15060 -33.74526 -32.30616 -31.80545 -30.50849 -30.02443 -27.60548 -25.80759 -25.49841 -24.59860 -24.38871 -22.33616 -21.71677 -21.13856 -19.50905 -19.04893 -18.86247 -18.30075 -17.55938 -17.22367 -16.69030 -16.47917 -16.29984 -15.94384 -15.78320 -15.49755 -15.45523 -15.10322 -15.02652 -14.77205 -14.55924 -14.27227 -14.09059 -13.81772 -13.58328 -13.30525 -13.22946 -12.90852 -12.82889 -12.76806 -12.68231 -12.59539 -12.49203 -12.28895 -12.15114 -11.72861 -11.55711 -11.40699 -11.07114 -10.91626 -10.76223 -10.55090 -10.02603 -9.91258 -8.99247 -8.74788 -7.76605 -4.96871 -0.80316 -0.14987 0.70749 1.43514 1.45420 1.51641 1.54987 1.89349 2.36297 2.64861 2.99479 3.21309 3.45079 3.53678 3.59172 3.65829 3.72934 3.84597 3.93358 3.97925 4.07622 4.16868 4.32672 4.37599 4.56020 4.58267 4.61870 4.69736 4.73620 4.82008 4.83459 4.87355 4.90654 5.01948 5.07811 5.10737 5.13620 5.15819 5.23935 5.36215 5.41819 5.61636 5.62090 5.65036 5.71237 5.77910 6.43828 6.58711 6.94728 7.25256 7.54637 8.23017 8.51266 9.43724 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.009804 B = 0.006095 C = 0.004192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2855.420042 B = 4592.754238 C = 6677.877706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.162 3.838 3 H 0.026 0.974 4 C -0.119 4.119 5 C 0.142 3.858 6 H 0.057 0.943 7 C -0.152 4.152 8 N -0.676 5.676 9 C 0.580 3.420 10 O -0.587 6.587 11 C -0.175 4.175 12 C 0.172 3.828 13 F -0.119 7.119 14 C -0.147 4.147 15 C -0.047 4.047 16 C -0.056 4.056 17 C -0.121 4.121 18 C 0.056 3.944 19 N -0.490 5.490 20 C 0.121 3.879 21 C -0.068 4.068 22 N -0.718 5.718 23 C -0.228 4.228 24 H 0.046 0.954 25 C -0.017 4.017 26 N -0.932 5.932 27 Si 0.922 3.078 28 H -0.301 1.301 29 H -0.286 1.286 30 H -0.297 1.297 31 H 0.027 0.973 32 H 0.068 0.932 33 H 0.047 0.953 34 H 0.110 0.890 35 H 0.076 0.924 36 H 0.069 0.931 37 H 0.089 0.911 38 H 0.040 0.960 39 H 0.405 0.595 40 H 0.141 0.859 41 H 0.185 0.815 42 H 0.185 0.815 43 H 0.190 0.810 44 H 0.148 0.852 45 H 0.373 0.627 46 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.058 -8.075 -5.295 11.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.053 3.947 3 H 0.044 0.956 4 C -0.157 4.157 5 C 0.038 3.962 6 H 0.075 0.925 7 C -0.210 4.210 8 N -0.325 5.325 9 C 0.366 3.634 10 O -0.469 6.469 11 C -0.181 4.181 12 C 0.151 3.849 13 F -0.097 7.097 14 C -0.166 4.166 15 C -0.065 4.065 16 C -0.062 4.062 17 C -0.140 4.140 18 C -0.089 4.089 19 N -0.198 5.198 20 C -0.047 4.047 21 C -0.071 4.071 22 N -0.361 5.361 23 C -0.359 4.359 24 H 0.064 0.936 25 C -0.212 4.212 26 N -0.582 5.582 27 Si 0.755 3.245 28 H -0.229 1.229 29 H -0.212 1.212 30 H -0.225 1.225 31 H 0.046 0.954 32 H 0.086 0.914 33 H 0.066 0.934 34 H 0.129 0.871 35 H 0.094 0.906 36 H 0.088 0.912 37 H 0.107 0.893 38 H 0.060 0.940 39 H 0.242 0.758 40 H 0.159 0.841 41 H 0.202 0.798 42 H 0.203 0.797 43 H 0.207 0.793 44 H 0.166 0.834 45 H 0.208 0.792 46 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 7.635 -7.690 -6.355 12.562 hybrid contribution -0.813 1.196 2.457 2.851 sum 6.822 -6.494 -3.897 10.193 Atomic orbital electron populations 1.22255 0.97693 1.00921 1.00278 1.20480 0.92735 0.94796 0.86671 0.95575 1.22119 0.92575 1.02141 0.98852 1.21054 0.93633 0.95948 0.85517 0.92494 1.22117 1.00770 1.01983 0.96173 1.46047 1.16430 1.36718 1.33322 1.17798 0.81822 0.81953 0.81784 1.90708 1.63466 1.32163 1.60572 1.20670 1.05575 0.99339 0.92564 1.17993 0.89106 0.84893 0.92909 1.91595 1.72070 1.51005 1.94992 1.20953 0.99575 0.97801 0.98311 1.21199 0.94843 0.93472 0.96987 1.18402 0.98196 0.96739 0.92837 1.22344 0.96963 0.94519 1.00157 1.22832 0.98174 0.99910 0.88030 1.67472 1.08258 1.07237 1.36820 1.22760 0.94676 0.92546 0.94729 1.19564 0.97753 0.93731 0.96012 1.42451 1.78201 1.09782 1.05645 1.19063 1.35204 0.92974 0.88674 0.93625 1.24669 1.02135 0.96230 0.98128 1.69666 1.52060 1.08223 1.28277 0.86119 0.76683 0.78405 0.83304 1.22888 1.21173 1.22466 0.95384 0.91352 0.93370 0.87149 0.90550 0.91182 0.89251 0.94036 0.75785 0.84121 0.79761 0.79731 0.79289 0.83423 0.79215 0.94276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.96 9.49 71.98 0.68 -4.28 16 2 C 0.16 5.90 2.89 44.99 0.13 6.03 16 3 H 0.03 1.06 8.08 -2.39 -0.02 1.05 16 4 C -0.12 -3.31 4.43 30.59 0.14 -3.17 16 5 C 0.14 4.54 2.57 44.99 0.12 4.66 16 6 H 0.06 2.14 7.58 -2.39 -0.02 2.12 16 7 C -0.15 -3.84 9.48 71.98 0.68 -3.16 16 8 N -0.68 -25.20 3.80 -445.88 -1.69 -26.89 16 9 C 0.58 24.66 5.83 86.64 0.50 25.16 16 10 O -0.59 -28.20 16.77 -4.07 -0.07 -28.26 16 11 C -0.18 -7.10 5.81 -18.65 -0.11 -7.20 16 12 C 0.17 7.24 6.24 22.75 0.14 7.38 16 13 F -0.12 -5.89 11.80 44.97 0.53 -5.36 16 14 C -0.15 -4.96 9.86 22.01 0.22 -4.74 16 15 C -0.05 -1.22 9.75 22.27 0.22 -1.00 16 16 C -0.06 -1.54 5.75 -21.31 -0.12 -1.67 16 17 C -0.12 -2.38 9.89 22.41 0.22 -2.16 16 18 C 0.06 1.19 11.07 84.15 0.93 2.12 16 19 N -0.49 -14.01 10.30 -195.78 -2.02 -16.02 16 20 C 0.12 3.91 10.73 85.18 0.91 4.83 16 21 C -0.07 -2.32 5.90 -19.99 -0.12 -2.44 16 22 N -0.72 -32.21 3.84 -322.93 -1.24 -33.45 16 23 C -0.23 -11.89 9.52 84.03 0.80 -11.09 16 24 H 0.05 2.51 7.83 -2.91 -0.02 2.49 16 25 C -0.02 -0.89 3.19 84.86 0.27 -0.62 16 26 N -0.93 -48.12 11.76 21.65 0.25 -47.87 16 27 Si 0.92 45.01 28.15 68.60 1.93 46.94 16 28 H -0.30 -14.88 7.11 99.48 0.71 -14.17 16 29 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 30 H -0.30 -14.95 7.11 99.48 0.71 -14.24 16 31 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.07 1.78 8.14 -2.38 -0.02 1.76 16 33 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.11 2.35 8.14 -2.39 -0.02 2.33 16 35 H 0.08 2.01 8.14 -2.39 -0.02 2.00 16 36 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 38 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.40 15.53 6.49 -92.71 -0.60 14.93 16 40 H 0.14 4.45 8.06 -2.91 -0.02 4.43 16 41 H 0.19 2.87 8.06 -2.91 -0.02 2.85 16 42 H 0.19 1.89 8.06 -2.91 -0.02 1.87 16 43 H 0.19 2.51 8.06 -2.91 -0.02 2.48 16 44 H 0.15 4.82 7.37 -2.91 -0.02 4.80 16 45 H 0.37 17.20 5.70 -92.71 -0.53 16.67 16 46 H 0.25 12.75 8.31 -92.70 -0.77 11.97 16 Total: -1.00 -67.96 378.87 3.20 -64.75 By element: Atomic # 1 Polarization: 37.61 SS G_CDS: -0.11 Total: 37.50 kcal Atomic # 6 Polarization: 3.05 SS G_CDS: 5.62 Total: 8.66 kcal Atomic # 7 Polarization: -119.54 SS G_CDS: -4.70 Total: -124.24 kcal Atomic # 8 Polarization: -28.20 SS G_CDS: -0.07 Total: -28.26 kcal Atomic # 9 Polarization: -5.89 SS G_CDS: 0.53 Total: -5.36 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 1.93 Total: 46.94 kcal Total: -67.96 3.20 -64.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134402873.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.823 kcal (2) G-P(sol) polarization free energy of solvation -67.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.05 seconds