Wall clock time and date at job start Wed Apr 1 2020 03:23:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47033 * 2 1 4 4 C 1.52997 * 109.47264 * 239.99923 * 2 1 3 5 5 C 1.53006 * 109.46841 * 174.99605 * 4 2 1 6 6 H 1.09000 * 109.47128 * 55.00806 * 5 4 2 7 7 C 1.53005 * 109.46558 * 175.00091 * 5 4 2 8 8 N 1.46498 * 109.47329 * 295.00084 * 5 4 2 9 9 C 1.34775 * 119.99607 * 155.00046 * 8 5 4 10 10 O 1.21613 * 120.00527 * 359.97438 * 9 8 5 11 11 C 1.47349 * 119.99799 * 180.02562 * 9 8 5 12 12 C 1.39187 * 120.77052 * 89.71993 * 11 9 8 13 13 F 1.35106 * 119.70489 * 0.02562 * 12 11 9 14 14 C 1.39281 * 120.58611 * 179.76650 * 12 11 9 15 15 C 1.36025 * 121.82470 * 0.52359 * 14 12 11 16 16 C 1.40365 * 120.53741 * 359.73569 * 15 14 12 17 17 C 1.40639 * 122.23726 * 179.97438 * 16 15 14 18 18 C 1.36298 * 118.65381 * 180.02562 * 17 16 15 19 19 N 1.32491 * 121.89414 * 0.03743 * 18 17 16 20 20 C 1.31377 * 122.68283 * 359.97438 * 19 18 17 21 21 C 1.39982 * 119.84325 * 359.97438 * 20 19 18 22 22 N 1.46498 * 109.46890 * 119.99923 * 2 1 3 23 23 C 1.36935 * 120.00239 * 275.00034 * 22 2 1 24 24 H 1.08004 * 120.00069 * 0.02562 * 23 22 2 25 25 C 1.38811 * 120.00368 * 180.02562 * 23 22 2 26 26 N 1.31624 * 119.99540 * 359.72375 * 25 23 22 27 27 Si 1.86800 * 120.00451 * 180.02562 * 25 23 22 28 28 H 1.48501 * 109.46758 * 269.72270 * 27 25 23 29 29 H 1.48499 * 109.47026 * 29.72118 * 27 25 23 30 30 H 1.48496 * 109.47474 * 149.72153 * 27 25 23 31 31 H 1.09005 * 109.47033 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47214 * 299.99506 * 1 2 3 33 33 H 1.08994 * 109.47102 * 60.00064 * 1 2 3 34 34 H 1.08996 * 109.47554 * 295.00148 * 4 2 1 35 35 H 1.09001 * 109.46960 * 55.00369 * 4 2 1 36 36 H 1.08994 * 109.47185 * 300.00100 * 7 5 4 37 37 H 1.08999 * 109.47043 * 60.01027 * 7 5 4 38 38 H 1.09001 * 109.46484 * 180.02562 * 7 5 4 39 39 H 0.97002 * 120.00037 * 335.00467 * 8 5 4 40 40 H 1.07997 * 119.08747 * 180.25827 * 14 12 11 41 41 H 1.08002 * 119.73196 * 179.72005 * 15 14 12 42 42 H 1.08005 * 120.67466 * 0.02562 * 17 16 15 43 43 H 1.07994 * 119.05371 * 180.02562 * 18 17 16 44 44 H 1.08005 * 120.08309 * 180.02562 * 20 19 18 45 45 H 0.97004 * 119.99747 * 95.00774 * 22 2 1 46 46 H 0.97000 * 120.00481 * 0.27542 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5649 -0.6131 -1.3136 6 1 3.9955 -0.9922 -0.3868 7 6 4.0852 -1.4382 -2.4924 8 7 3.9479 0.7895 -1.4924 9 6 5.1611 1.2137 -1.0866 10 8 5.9377 0.4322 -0.5716 11 6 5.5462 2.6246 -1.2659 12 6 5.2762 3.5675 -0.2782 13 9 4.6542 3.1864 0.8590 14 6 5.6462 4.8992 -0.4497 15 6 6.2694 5.3309 -1.5791 16 6 6.5669 4.4337 -2.6168 17 6 7.2095 4.8411 -3.7996 18 6 7.4626 3.9082 -4.7605 19 7 7.1205 2.6372 -4.6096 20 6 6.5181 2.1878 -3.5320 21 6 6.2145 3.0669 -2.4858 22 7 2.0183 -0.6906 1.1962 23 6 2.1490 -0.0075 2.3758 24 1 1.8918 1.0403 2.4244 25 6 2.6122 -0.6617 3.5091 26 7 2.9205 -1.9400 3.4511 27 14 2.7899 0.2699 5.1184 28 1 4.1540 0.8503 5.2062 29 1 1.7835 1.3605 5.1727 30 1 2.5735 -0.6603 6.2554 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5137 0.8900 33 1 -0.3633 0.5138 -0.8899 34 1 1.7517 -1.7715 -1.2056 35 1 1.6054 -0.2617 -2.1369 36 1 3.8002 -2.4818 -2.3594 37 1 3.6547 -1.0591 -3.4193 38 1 5.1716 -1.3615 -2.5380 39 1 3.3284 1.4130 -1.9027 40 1 5.4285 5.6097 0.3341 41 1 6.5373 6.3724 -1.6783 42 1 7.4965 5.8723 -3.9436 43 1 7.9561 4.2139 -5.6711 44 1 6.2584 1.1424 -3.4531 45 1 2.2490 -1.6318 1.1526 46 1 2.8279 -2.4240 2.6156 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134402878.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:23:43 Heat of formation + Delta-G solvation = -18.736494 kcal Electronic energy + Delta-G solvation = -30731.875190 eV Core-core repulsion = 26536.067108 eV Total energy + Delta-G solvation = -4195.808082 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -49.01955 -41.10176 -39.53684 -37.37228 -36.85077 -34.63266 -33.28552 -32.28618 -31.51762 -30.78881 -29.63294 -28.27824 -26.40715 -25.12214 -23.89275 -23.77850 -23.34195 -21.38419 -20.47881 -19.89550 -18.82362 -18.19261 -17.63023 -17.32250 -16.68335 -16.16215 -15.81904 -15.59438 -15.26916 -14.87505 -14.82702 -14.38947 -14.33457 -14.19110 -13.90114 -13.73076 -13.52931 -13.20640 -13.18792 -12.91805 -12.24451 -12.15478 -12.11259 -12.07394 -11.99467 -11.71136 -11.69667 -11.04017 -10.69682 -10.51910 -10.42478 -10.39966 -10.09076 -9.93933 -9.92256 -9.78663 -9.43330 -9.08466 -8.86795 -8.82080 -8.41184 -6.93871 -5.99496 -2.98817 -0.19976 0.43487 1.31793 2.48211 2.58544 3.17907 3.57145 3.59458 3.63582 3.75752 3.79454 4.08967 4.11168 4.27279 4.44626 4.49529 4.62333 4.75534 4.82764 5.02624 5.17967 5.21113 5.31472 5.32464 5.38497 5.39912 5.59074 5.60052 5.64319 5.69350 5.80513 5.84471 5.86126 5.93041 6.05355 6.19217 6.21682 6.26668 6.33829 6.36760 6.47440 6.57463 6.69381 6.84840 7.02001 7.58713 7.60815 7.90707 8.29361 8.85914 9.32512 10.18668 10.32940 11.49106 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.012061 B = 0.003715 C = 0.003188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2320.950800 B = 7535.417677 C = 8780.687716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.177 3.823 3 H 0.047 0.953 4 C -0.132 4.132 5 C 0.143 3.857 6 H 0.104 0.896 7 C -0.162 4.162 8 N -0.703 5.703 9 C 0.565 3.435 10 O -0.511 6.511 11 C -0.134 4.134 12 C 0.144 3.856 13 F -0.111 7.111 14 C -0.128 4.128 15 C -0.069 4.069 16 C -0.036 4.036 17 C -0.146 4.146 18 C 0.075 3.925 19 N -0.477 5.477 20 C 0.148 3.852 21 C -0.064 4.064 22 N -0.731 5.731 23 C -0.323 4.323 24 H 0.061 0.939 25 C -0.044 4.044 26 N -0.945 5.945 27 Si 1.078 2.922 28 H -0.296 1.296 29 H -0.296 1.296 30 H -0.289 1.289 31 H 0.044 0.956 32 H 0.053 0.947 33 H 0.035 0.965 34 H 0.076 0.924 35 H 0.063 0.937 36 H 0.066 0.934 37 H 0.053 0.947 38 H 0.057 0.943 39 H 0.397 0.603 40 H 0.148 0.852 41 H 0.145 0.855 42 H 0.143 0.857 43 H 0.157 0.843 44 H 0.163 0.837 45 H 0.365 0.635 46 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.976 15.562 -18.340 24.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.067 3.933 3 H 0.065 0.935 4 C -0.171 4.171 5 C 0.039 3.961 6 H 0.122 0.878 7 C -0.221 4.221 8 N -0.354 5.354 9 C 0.349 3.651 10 O -0.386 6.386 11 C -0.140 4.140 12 C 0.124 3.876 13 F -0.089 7.089 14 C -0.148 4.148 15 C -0.087 4.087 16 C -0.041 4.041 17 C -0.165 4.165 18 C -0.070 4.070 19 N -0.184 5.184 20 C -0.021 4.021 21 C -0.067 4.067 22 N -0.374 5.374 23 C -0.454 4.454 24 H 0.079 0.921 25 C -0.241 4.241 26 N -0.591 5.591 27 Si 0.909 3.091 28 H -0.224 1.224 29 H -0.223 1.223 30 H -0.215 1.215 31 H 0.064 0.936 32 H 0.072 0.928 33 H 0.054 0.946 34 H 0.094 0.906 35 H 0.082 0.918 36 H 0.085 0.915 37 H 0.072 0.928 38 H 0.076 0.924 39 H 0.231 0.769 40 H 0.166 0.834 41 H 0.163 0.837 42 H 0.161 0.839 43 H 0.174 0.826 44 H 0.180 0.820 45 H 0.199 0.801 46 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 6.158 14.569 -17.032 23.244 hybrid contribution -1.079 0.829 -0.785 1.571 sum 5.078 15.398 -17.817 24.090 Atomic orbital electron populations 1.22436 0.99438 1.00721 0.99873 1.20155 0.91586 0.95534 0.86062 0.93544 1.22198 0.93548 1.02273 0.99081 1.21101 0.95306 0.79677 0.99995 0.87791 1.22201 1.01609 1.00283 0.97967 1.45977 1.15756 1.11937 1.61687 1.17642 0.82732 0.86133 0.78606 1.90889 1.51190 1.54901 1.41613 1.21008 1.04057 0.94216 0.94764 1.17800 0.94529 0.92347 0.82948 1.91702 1.78847 1.91589 1.46749 1.20896 1.00005 0.94074 0.99844 1.20861 0.96466 0.99821 0.91585 1.18105 0.98193 0.92417 0.95432 1.21927 0.99713 1.01524 0.93362 1.22288 0.97382 0.88224 0.99075 1.67540 1.10289 1.16938 1.23655 1.23052 0.92202 0.99598 0.87266 1.19484 0.99345 0.93980 0.93842 1.42404 1.79118 1.09640 1.06265 1.19970 1.41500 0.94860 0.89049 0.92075 1.25641 0.99527 0.97494 1.01474 1.70841 1.51665 1.08216 1.28360 0.83268 0.75843 0.74180 0.75794 1.22362 1.22292 1.21484 0.93644 0.92829 0.94635 0.90555 0.91797 0.91491 0.92805 0.92368 0.76949 0.83430 0.83694 0.83914 0.82611 0.82011 0.80133 0.93427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.93 9.49 37.16 0.35 -2.58 16 2 C 0.18 3.40 2.84 -67.93 -0.19 3.21 16 3 H 0.05 0.94 7.56 -51.93 -0.39 0.55 16 4 C -0.13 -2.00 4.29 -26.73 -0.11 -2.12 16 5 C 0.14 2.29 2.52 -67.93 -0.17 2.12 16 6 H 0.10 2.20 7.05 -51.93 -0.37 1.83 16 7 C -0.16 -2.15 9.48 37.16 0.35 -1.79 16 8 N -0.70 -10.53 4.44 -54.90 -0.24 -10.77 16 9 C 0.57 9.73 5.83 -12.55 -0.07 9.66 16 10 O -0.51 -11.09 16.77 5.27 0.09 -11.00 16 11 C -0.13 -1.94 5.81 -102.75 -0.60 -2.53 16 12 C 0.14 2.02 7.29 -38.84 -0.28 1.74 16 13 F -0.11 -1.96 16.82 2.25 0.04 -1.92 16 14 C -0.13 -1.27 9.86 -39.99 -0.39 -1.66 16 15 C -0.07 -0.55 9.75 -39.58 -0.39 -0.94 16 16 C -0.04 -0.35 5.75 -106.85 -0.61 -0.96 16 17 C -0.15 -1.11 9.89 -39.37 -0.39 -1.50 16 18 C 0.07 0.65 11.07 -17.97 -0.20 0.45 16 19 N -0.48 -5.51 10.30 -13.24 -0.14 -5.65 16 20 C 0.15 1.80 10.73 -17.09 -0.18 1.62 16 21 C -0.06 -0.78 5.90 -104.81 -0.62 -1.40 16 22 N -0.73 -18.10 4.49 -53.43 -0.24 -18.34 16 23 C -0.32 -9.19 9.93 -15.06 -0.15 -9.34 16 24 H 0.06 1.75 7.83 -52.48 -0.41 1.34 16 25 C -0.04 -1.31 5.50 -17.43 -0.10 -1.41 16 26 N -0.95 -30.00 13.70 55.49 0.76 -29.24 16 27 Si 1.08 27.20 29.92 -169.99 -5.09 22.11 16 28 H -0.30 -7.39 7.11 56.52 0.40 -6.99 16 29 H -0.30 -7.02 7.11 56.52 0.40 -6.61 16 30 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 31 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 33 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 37 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.40 4.89 8.59 -40.82 -0.35 4.54 16 40 H 0.15 1.10 8.06 -52.49 -0.42 0.68 16 41 H 0.15 0.63 8.06 -52.49 -0.42 0.21 16 42 H 0.14 0.59 8.06 -52.48 -0.42 0.17 16 43 H 0.16 0.89 8.06 -52.49 -0.42 0.47 16 44 H 0.16 1.95 7.37 -52.48 -0.39 1.57 16 45 H 0.37 9.42 6.63 -40.82 -0.27 9.15 16 46 H 0.25 7.93 6.77 -40.82 -0.28 7.65 16 LS Contribution 392.84 15.07 5.92 5.92 Total: -1.00 -36.51 392.84 -8.98 -45.49 By element: Atomic # 1 Polarization: 17.15 SS G_CDS: -6.32 Total: 10.83 kcal Atomic # 6 Polarization: -3.68 SS G_CDS: -3.76 Total: -7.43 kcal Atomic # 7 Polarization: -64.14 SS G_CDS: 0.14 Total: -64.00 kcal Atomic # 8 Polarization: -11.09 SS G_CDS: 0.09 Total: -11.00 kcal Atomic # 9 Polarization: -1.96 SS G_CDS: 0.04 Total: -1.92 kcal Atomic # 14 Polarization: 27.20 SS G_CDS: -5.09 Total: 22.11 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -36.51 -8.98 -45.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134402878.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.755 kcal (2) G-P(sol) polarization free energy of solvation -36.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds