Wall clock time and date at job start Wed Apr 1 2020 03:23:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47033 * 2 1 4 4 C 1.52997 * 109.47264 * 239.99923 * 2 1 3 5 5 C 1.53006 * 109.46841 * 174.99605 * 4 2 1 6 6 H 1.09000 * 109.47128 * 55.00806 * 5 4 2 7 7 C 1.53005 * 109.46558 * 175.00091 * 5 4 2 8 8 N 1.46498 * 109.47329 * 295.00084 * 5 4 2 9 9 C 1.34775 * 119.99607 * 155.00046 * 8 5 4 10 10 O 1.21613 * 120.00527 * 359.97438 * 9 8 5 11 11 C 1.47349 * 119.99799 * 180.02562 * 9 8 5 12 12 C 1.39187 * 120.77052 * 89.71993 * 11 9 8 13 13 F 1.35106 * 119.70489 * 0.02562 * 12 11 9 14 14 C 1.39281 * 120.58611 * 179.76650 * 12 11 9 15 15 C 1.36025 * 121.82470 * 0.52359 * 14 12 11 16 16 C 1.40365 * 120.53741 * 359.73569 * 15 14 12 17 17 C 1.40639 * 122.23726 * 179.97438 * 16 15 14 18 18 C 1.36298 * 118.65381 * 180.02562 * 17 16 15 19 19 N 1.32491 * 121.89414 * 0.03743 * 18 17 16 20 20 C 1.31377 * 122.68283 * 359.97438 * 19 18 17 21 21 C 1.39982 * 119.84325 * 359.97438 * 20 19 18 22 22 N 1.46498 * 109.46890 * 119.99923 * 2 1 3 23 23 C 1.36935 * 120.00239 * 275.00034 * 22 2 1 24 24 H 1.08004 * 120.00069 * 0.02562 * 23 22 2 25 25 C 1.38811 * 120.00368 * 180.02562 * 23 22 2 26 26 N 1.31624 * 119.99540 * 359.72375 * 25 23 22 27 27 Si 1.86800 * 120.00451 * 180.02562 * 25 23 22 28 28 H 1.48501 * 109.46758 * 269.72270 * 27 25 23 29 29 H 1.48499 * 109.47026 * 29.72118 * 27 25 23 30 30 H 1.48496 * 109.47474 * 149.72153 * 27 25 23 31 31 H 1.09005 * 109.47033 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47214 * 299.99506 * 1 2 3 33 33 H 1.08994 * 109.47102 * 60.00064 * 1 2 3 34 34 H 1.08996 * 109.47554 * 295.00148 * 4 2 1 35 35 H 1.09001 * 109.46960 * 55.00369 * 4 2 1 36 36 H 1.08994 * 109.47185 * 300.00100 * 7 5 4 37 37 H 1.08999 * 109.47043 * 60.01027 * 7 5 4 38 38 H 1.09001 * 109.46484 * 180.02562 * 7 5 4 39 39 H 0.97002 * 120.00037 * 335.00467 * 8 5 4 40 40 H 1.07997 * 119.08747 * 180.25827 * 14 12 11 41 41 H 1.08002 * 119.73196 * 179.72005 * 15 14 12 42 42 H 1.08005 * 120.67466 * 0.02562 * 17 16 15 43 43 H 1.07994 * 119.05371 * 180.02562 * 18 17 16 44 44 H 1.08005 * 120.08309 * 180.02562 * 20 19 18 45 45 H 0.97004 * 119.99747 * 95.00774 * 22 2 1 46 46 H 0.97000 * 120.00481 * 0.27542 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5649 -0.6131 -1.3136 6 1 3.9955 -0.9922 -0.3868 7 6 4.0852 -1.4382 -2.4924 8 7 3.9479 0.7895 -1.4924 9 6 5.1611 1.2137 -1.0866 10 8 5.9377 0.4322 -0.5716 11 6 5.5462 2.6246 -1.2659 12 6 5.2762 3.5675 -0.2782 13 9 4.6542 3.1864 0.8590 14 6 5.6462 4.8992 -0.4497 15 6 6.2694 5.3309 -1.5791 16 6 6.5669 4.4337 -2.6168 17 6 7.2095 4.8411 -3.7996 18 6 7.4626 3.9082 -4.7605 19 7 7.1205 2.6372 -4.6096 20 6 6.5181 2.1878 -3.5320 21 6 6.2145 3.0669 -2.4858 22 7 2.0183 -0.6906 1.1962 23 6 2.1490 -0.0075 2.3758 24 1 1.8918 1.0403 2.4244 25 6 2.6122 -0.6617 3.5091 26 7 2.9205 -1.9400 3.4511 27 14 2.7899 0.2699 5.1184 28 1 4.1540 0.8503 5.2062 29 1 1.7835 1.3605 5.1727 30 1 2.5735 -0.6603 6.2554 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5137 0.8900 33 1 -0.3633 0.5138 -0.8899 34 1 1.7517 -1.7715 -1.2056 35 1 1.6054 -0.2617 -2.1369 36 1 3.8002 -2.4818 -2.3594 37 1 3.6547 -1.0591 -3.4193 38 1 5.1716 -1.3615 -2.5380 39 1 3.3284 1.4130 -1.9027 40 1 5.4285 5.6097 0.3341 41 1 6.5373 6.3724 -1.6783 42 1 7.4965 5.8723 -3.9436 43 1 7.9561 4.2139 -5.6711 44 1 6.2584 1.1424 -3.4531 45 1 2.2490 -1.6318 1.1526 46 1 2.8279 -2.4240 2.6156 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134402878.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:23:39 Heat of formation + Delta-G solvation = -43.981335 kcal Electronic energy + Delta-G solvation = -30732.969888 eV Core-core repulsion = 26536.067108 eV Total energy + Delta-G solvation = -4196.902780 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 4.81 seconds Orbital eigenvalues (eV) -50.23181 -41.96736 -40.79852 -38.58785 -38.01880 -36.33802 -34.38761 -33.95954 -32.42470 -31.94510 -30.57136 -30.17068 -27.72744 -26.03538 -25.57153 -24.76790 -24.58857 -22.60428 -21.78122 -21.43028 -19.76430 -19.51164 -19.16324 -18.54791 -17.74719 -17.40519 -16.81661 -16.75627 -16.70126 -16.10979 -16.06839 -15.88519 -15.52166 -15.33748 -15.19421 -14.95897 -14.75458 -14.67138 -14.35602 -14.06434 -13.61794 -13.51505 -13.22889 -13.02814 -12.97427 -12.91426 -12.83273 -12.81136 -12.55960 -12.23945 -11.95809 -11.90134 -11.63481 -11.32884 -11.21046 -11.12850 -10.93961 -10.64740 -10.26274 -10.21804 -9.23301 -9.07565 -8.36583 -5.27796 -1.01797 -0.37103 0.51238 1.27725 1.50014 1.62074 1.69590 1.75024 2.00798 2.68993 2.79697 2.87419 3.29837 3.35962 3.42481 3.49173 3.55923 3.66360 3.72983 3.77591 3.82911 3.98273 4.19090 4.24149 4.39118 4.44306 4.48171 4.56077 4.61317 4.66859 4.69519 4.71483 4.78354 4.79156 4.89642 4.91073 4.97358 5.09328 5.11580 5.21401 5.27573 5.43448 5.45355 5.50046 5.60378 5.61946 6.32831 6.52337 6.85297 7.02442 7.13981 8.04440 8.14522 9.15988 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.012061 B = 0.003715 C = 0.003188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2320.950800 B = 7535.417677 C = 8780.687716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.168 3.832 3 H 0.035 0.965 4 C -0.119 4.119 5 C 0.144 3.856 6 H 0.044 0.956 7 C -0.151 4.151 8 N -0.691 5.691 9 C 0.563 3.437 10 O -0.573 6.573 11 C -0.163 4.163 12 C 0.125 3.875 13 F -0.144 7.144 14 C -0.140 4.140 15 C -0.033 4.033 16 C -0.049 4.049 17 C -0.117 4.117 18 C 0.061 3.939 19 N -0.491 5.491 20 C 0.123 3.877 21 C -0.071 4.071 22 N -0.743 5.743 23 C -0.312 4.312 24 H 0.057 0.943 25 C -0.108 4.108 26 N -0.979 5.979 27 Si 1.119 2.881 28 H -0.295 1.295 29 H -0.270 1.270 30 H -0.290 1.290 31 H 0.044 0.956 32 H 0.027 0.973 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.109 0.891 36 H 0.075 0.925 37 H 0.085 0.915 38 H 0.040 0.960 39 H 0.411 0.589 40 H 0.174 0.826 41 H 0.200 0.800 42 H 0.194 0.806 43 H 0.190 0.810 44 H 0.145 0.855 45 H 0.357 0.643 46 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.859 19.820 -21.229 29.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.060 3.940 3 H 0.053 0.947 4 C -0.157 4.157 5 C 0.040 3.960 6 H 0.063 0.937 7 C -0.209 4.209 8 N -0.341 5.341 9 C 0.349 3.651 10 O -0.453 6.453 11 C -0.170 4.170 12 C 0.105 3.895 13 F -0.122 7.122 14 C -0.160 4.160 15 C -0.050 4.050 16 C -0.054 4.054 17 C -0.136 4.136 18 C -0.084 4.084 19 N -0.199 5.199 20 C -0.046 4.046 21 C -0.074 4.074 22 N -0.385 5.385 23 C -0.444 4.444 24 H 0.075 0.925 25 C -0.299 4.299 26 N -0.628 5.628 27 Si 0.946 3.054 28 H -0.223 1.223 29 H -0.195 1.195 30 H -0.216 1.216 31 H 0.063 0.937 32 H 0.046 0.954 33 H 0.097 0.903 34 H 0.100 0.900 35 H 0.127 0.873 36 H 0.093 0.907 37 H 0.104 0.896 38 H 0.059 0.941 39 H 0.247 0.753 40 H 0.191 0.809 41 H 0.217 0.783 42 H 0.211 0.789 43 H 0.207 0.793 44 H 0.163 0.837 45 H 0.189 0.811 46 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 5.969 18.865 -19.991 28.127 hybrid contribution -0.985 -0.352 -0.101 1.051 sum 4.983 18.513 -20.091 27.771 Atomic orbital electron populations 1.22275 0.97435 1.00965 1.00717 1.20443 0.92797 0.94900 0.85810 0.94688 1.22109 0.92496 1.02513 0.98558 1.20948 0.95883 0.80491 0.98652 0.93740 1.22095 1.00572 1.00372 0.97902 1.45899 1.15478 1.11900 1.60827 1.18181 0.82464 0.87231 0.77223 1.90835 1.52949 1.56994 1.44510 1.20809 1.06886 0.92507 0.96752 1.18377 0.95052 0.94329 0.81733 1.91610 1.79820 1.92193 1.48625 1.21144 1.00877 0.92206 1.01736 1.21439 0.92676 1.01674 0.89216 1.18524 0.98434 0.91368 0.97113 1.22441 0.96508 1.03504 0.91120 1.22944 0.97307 0.87314 1.00816 1.67514 1.10070 1.18999 1.23320 1.22814 0.94278 0.99266 0.88235 1.19508 0.99525 0.95611 0.92744 1.42600 1.79471 1.09353 1.07102 1.20234 1.39102 0.94694 0.90346 0.92491 1.26964 1.00239 0.97714 1.05026 1.70946 1.54536 1.09390 1.27917 0.82730 0.76387 0.73847 0.72479 1.22278 1.19516 1.21575 0.93674 0.95364 0.90346 0.90013 0.87287 0.90655 0.89586 0.94105 0.75254 0.80886 0.78338 0.78922 0.79312 0.83732 0.81142 0.94651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.30 9.49 71.98 0.68 -4.62 16 2 C 0.17 6.55 2.84 44.99 0.13 6.68 16 3 H 0.04 1.44 7.56 -2.38 -0.02 1.42 16 4 C -0.12 -3.51 4.29 30.60 0.13 -3.38 16 5 C 0.14 4.88 2.52 45.00 0.11 4.99 16 6 H 0.04 2.07 7.05 -2.39 -0.02 2.05 16 7 C -0.15 -4.09 9.48 71.98 0.68 -3.41 16 8 N -0.69 -21.91 4.44 -445.86 -1.98 -23.90 16 9 C 0.56 21.16 5.83 86.64 0.50 21.67 16 10 O -0.57 -27.68 16.77 -4.07 -0.07 -27.75 16 11 C -0.16 -4.98 5.81 -18.65 -0.11 -5.09 16 12 C 0.13 3.61 7.29 22.75 0.17 3.78 16 13 F -0.14 -5.43 16.82 44.97 0.76 -4.67 16 14 C -0.14 -2.45 9.86 22.01 0.22 -2.23 16 15 C -0.03 -0.37 9.75 22.27 0.22 -0.15 16 16 C -0.05 -0.78 5.75 -21.31 -0.12 -0.90 16 17 C -0.12 -1.16 9.89 22.40 0.22 -0.94 16 18 C 0.06 0.84 11.07 84.14 0.93 1.77 16 19 N -0.49 -10.80 10.30 -195.80 -2.02 -12.82 16 20 C 0.12 3.06 10.73 85.18 0.91 3.98 16 21 C -0.07 -1.72 5.90 -19.99 -0.12 -1.84 16 22 N -0.74 -38.46 4.49 -322.94 -1.45 -39.91 16 23 C -0.31 -18.47 9.93 84.03 0.83 -17.64 16 24 H 0.06 3.36 7.83 -2.91 -0.02 3.34 16 25 C -0.11 -6.72 5.50 84.86 0.47 -6.26 16 26 N -0.98 -65.08 13.70 21.65 0.30 -64.78 16 27 Si 1.12 56.46 29.92 68.60 2.05 58.51 16 28 H -0.30 -14.71 7.11 99.48 0.71 -14.00 16 29 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 30 H -0.29 -14.54 7.11 99.48 0.71 -13.83 16 31 H 0.04 1.55 8.14 -2.38 -0.02 1.53 16 32 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 34 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 35 H 0.11 2.30 8.14 -2.39 -0.02 2.29 16 36 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 38 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.41 10.35 8.59 -92.71 -0.80 9.56 16 40 H 0.17 2.06 8.06 -2.91 -0.02 2.04 16 41 H 0.20 0.17 8.06 -2.91 -0.02 0.14 16 42 H 0.19 0.04 8.06 -2.91 -0.02 0.01 16 43 H 0.19 1.25 8.06 -2.91 -0.02 1.23 16 44 H 0.15 3.90 7.37 -2.91 -0.02 3.88 16 45 H 0.36 19.53 6.63 -92.71 -0.61 18.92 16 46 H 0.24 16.08 6.77 -92.71 -0.63 15.45 16 Total: -1.00 -89.40 392.84 3.20 -86.20 By element: Atomic # 1 Polarization: 32.96 SS G_CDS: -0.25 Total: 32.71 kcal Atomic # 6 Polarization: -9.46 SS G_CDS: 5.86 Total: -3.60 kcal Atomic # 7 Polarization: -136.25 SS G_CDS: -5.15 Total: -141.40 kcal Atomic # 8 Polarization: -27.68 SS G_CDS: -0.07 Total: -27.75 kcal Atomic # 9 Polarization: -5.43 SS G_CDS: 0.76 Total: -4.67 kcal Atomic # 14 Polarization: 56.46 SS G_CDS: 2.05 Total: 58.51 kcal Total: -89.40 3.20 -86.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134402878.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.215 kcal (2) G-P(sol) polarization free energy of solvation -89.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.81 seconds