Wall clock time and date at job start Wed Apr 1 2020 03:24:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.47025 * 2 1 4 4 C 1.52999 * 109.47459 * 239.99875 * 2 1 3 5 5 C 1.53004 * 109.47132 * 174.99677 * 4 2 1 6 6 H 1.09000 * 109.46883 * 55.00272 * 5 4 2 7 7 C 1.53002 * 109.47050 * 175.00098 * 5 4 2 8 8 N 1.46501 * 109.47124 * 294.99833 * 5 4 2 9 9 C 1.34777 * 119.99688 * 154.99762 * 8 5 4 10 10 O 1.21611 * 120.00258 * 0.02562 * 9 8 5 11 11 C 1.47393 * 119.99802 * 179.97438 * 9 8 5 12 12 C 1.38949 * 120.65937 * 354.26763 * 11 9 8 13 13 C 1.38738 * 120.73475 * 179.97438 * 12 11 9 14 14 C 1.37490 * 121.68035 * 0.02562 * 13 12 11 15 15 F 1.35105 * 119.85373 * 179.97438 * 14 13 12 16 16 C 1.40593 * 120.29666 * 359.95611 * 14 13 12 17 17 C 1.40583 * 122.25574 * 179.97438 * 16 14 13 18 18 C 1.36315 * 118.64970 * 180.02562 * 17 16 14 19 19 N 1.32484 * 121.87839 * 359.97438 * 18 17 16 20 20 C 1.31365 * 122.68493 * 0.02562 * 19 18 17 21 21 C 1.40013 * 119.85213 * 359.75230 * 20 19 18 22 22 N 1.46498 * 109.47201 * 119.99764 * 2 1 3 23 23 C 1.36939 * 119.99731 * 275.00180 * 22 2 1 24 24 H 1.07993 * 120.00199 * 0.02562 * 23 22 2 25 25 C 1.38818 * 119.99684 * 179.72472 * 23 22 2 26 26 N 1.31618 * 119.99829 * 0.27739 * 25 23 22 27 27 Si 1.86802 * 119.99995 * 180.27859 * 25 23 22 28 28 H 1.48497 * 109.46898 * 359.97438 * 27 25 23 29 29 H 1.48491 * 109.47258 * 119.99912 * 27 25 23 30 30 H 1.48500 * 109.46972 * 240.00011 * 27 25 23 31 31 H 1.08997 * 109.47119 * 300.00168 * 1 2 3 32 32 H 1.08998 * 109.46907 * 60.00361 * 1 2 3 33 33 H 1.08998 * 109.46600 * 179.97438 * 1 2 3 34 34 H 1.08995 * 109.47332 * 294.99648 * 4 2 1 35 35 H 1.08998 * 109.46974 * 54.99793 * 4 2 1 36 36 H 1.09001 * 109.46909 * 59.99827 * 7 5 4 37 37 H 1.08997 * 109.47211 * 180.02562 * 7 5 4 38 38 H 1.09003 * 109.47152 * 300.00539 * 7 5 4 39 39 H 0.96993 * 120.00270 * 335.00368 * 8 5 4 40 40 H 1.07997 * 119.62970 * 359.97438 * 12 11 9 41 41 H 1.07997 * 119.15684 * 179.97438 * 13 12 11 42 42 H 1.07998 * 120.67646 * 0.02562 * 17 16 14 43 43 H 1.07997 * 119.05956 * 179.97438 * 18 17 16 44 44 H 1.08001 * 120.07269 * 180.02562 * 20 19 18 45 45 H 0.97001 * 120.00019 * 95.00636 * 22 2 1 46 46 H 0.96999 * 120.00014 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5649 -0.6132 -1.3136 6 1 3.9954 -0.9921 -0.3867 7 6 4.0853 -1.4382 -2.4924 8 7 3.9479 0.7895 -1.4924 9 6 5.1611 1.2137 -1.0866 10 8 5.9380 0.4321 -0.5725 11 6 5.5467 2.6248 -1.2671 12 6 4.7206 3.5022 -1.9588 13 6 5.0818 4.8309 -2.1291 14 6 6.2604 5.3290 -1.6259 15 9 6.5757 6.6292 -1.8139 16 6 7.1388 4.4915 -0.9163 17 6 8.3541 4.9570 -0.3848 18 6 9.1505 4.0806 0.2904 19 7 8.8099 2.8112 0.4571 20 6 7.6903 2.3096 -0.0124 21 6 6.8007 3.1297 -0.7171 22 7 2.0183 -0.6905 1.1962 23 6 2.1491 -0.0073 2.3757 24 1 1.8918 1.0404 2.4243 25 6 2.6064 -0.6630 3.5106 26 7 2.9195 -1.9401 3.4515 27 14 2.7773 0.2670 5.1216 28 1 2.3646 1.6797 4.9237 29 1 1.9118 -0.3625 6.1509 30 1 4.1922 0.2234 5.5705 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3632 -1.0277 -0.0005 34 1 1.7518 -1.7715 -1.2055 35 1 1.6054 -0.2618 -2.1369 36 1 3.6547 -1.0593 -3.4193 37 1 5.1716 -1.3616 -2.5380 38 1 3.8002 -2.4818 -2.3594 39 1 3.3284 1.4129 -1.9028 40 1 3.7870 3.1459 -2.3684 41 1 4.4206 5.4905 -2.6714 42 1 8.6508 5.9880 -0.5088 43 1 10.0859 4.4311 0.7011 44 1 7.4544 1.2681 0.1486 45 1 2.2491 -1.6317 1.1526 46 1 3.2387 -2.3984 4.2445 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135280214.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:24:07 Heat of formation + Delta-G solvation = -16.092048 kcal Electronic energy + Delta-G solvation = -30266.156125 eV Core-core repulsion = 26070.462714 eV Total energy + Delta-G solvation = -4195.693410 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -49.36204 -40.99280 -39.51104 -37.28905 -36.82908 -34.58282 -32.93077 -32.20186 -31.39626 -31.07193 -29.30689 -28.59534 -26.37084 -25.00085 -23.97357 -23.67298 -23.40052 -21.30608 -20.61972 -19.78354 -18.58736 -18.17707 -17.78720 -17.17707 -16.75035 -16.10643 -15.97069 -15.44342 -15.10494 -14.97174 -14.76514 -14.58691 -14.13381 -14.00189 -13.93799 -13.62382 -13.46113 -13.09401 -13.03406 -12.73347 -12.59265 -12.21442 -12.07217 -11.94005 -11.80203 -11.75693 -11.62975 -11.07074 -10.83493 -10.63080 -10.47380 -10.25826 -10.21855 -9.90291 -9.79737 -9.62191 -9.50173 -9.48189 -8.89538 -8.86831 -8.23716 -6.91980 -5.72622 -3.00673 -0.23707 0.53731 1.35350 2.37951 3.11488 3.28057 3.46354 3.51717 3.54257 3.64266 3.84428 4.13996 4.21015 4.44533 4.48882 4.57159 4.62154 4.63269 4.99825 5.05177 5.19566 5.34357 5.38550 5.42504 5.44505 5.54561 5.61529 5.64691 5.68516 5.79483 5.81664 5.85593 5.91144 5.98132 6.09476 6.25642 6.28832 6.32822 6.40360 6.50958 6.53486 6.68296 6.74828 6.87669 7.04847 7.60215 7.73588 7.86905 8.33178 8.45740 9.57454 10.13955 10.48030 11.50044 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.009300 B = 0.003691 C = 0.003205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3010.002305 B = 7583.836479 C = 8735.547168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.171 3.829 3 H 0.045 0.955 4 C -0.131 4.131 5 C 0.143 3.857 6 H 0.110 0.890 7 C -0.161 4.161 8 N -0.705 5.705 9 C 0.562 3.438 10 O -0.521 6.521 11 C -0.097 4.097 12 C -0.061 4.061 13 C -0.140 4.140 14 C 0.123 3.877 15 F -0.128 7.128 16 C -0.055 4.055 17 C -0.161 4.161 18 C 0.086 3.914 19 N -0.481 5.481 20 C 0.155 3.845 21 C -0.059 4.059 22 N -0.720 5.720 23 C -0.235 4.235 24 H 0.067 0.933 25 C -0.010 4.010 26 N -0.930 5.930 27 Si 0.900 3.100 28 H -0.282 1.282 29 H -0.292 1.292 30 H -0.291 1.291 31 H 0.052 0.948 32 H 0.033 0.967 33 H 0.046 0.954 34 H 0.078 0.922 35 H 0.061 0.939 36 H 0.050 0.950 37 H 0.057 0.943 38 H 0.066 0.934 39 H 0.394 0.606 40 H 0.143 0.857 41 H 0.146 0.854 42 H 0.142 0.858 43 H 0.157 0.843 44 H 0.204 0.796 45 H 0.383 0.617 46 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.468 12.518 -16.925 21.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.061 3.939 3 H 0.063 0.937 4 C -0.170 4.170 5 C 0.039 3.961 6 H 0.128 0.872 7 C -0.220 4.220 8 N -0.355 5.355 9 C 0.348 3.652 10 O -0.399 6.399 11 C -0.102 4.102 12 C -0.080 4.080 13 C -0.160 4.160 14 C 0.103 3.897 15 F -0.107 7.107 16 C -0.061 4.061 17 C -0.180 4.180 18 C -0.059 4.059 19 N -0.189 5.189 20 C -0.014 4.014 21 C -0.062 4.062 22 N -0.362 5.362 23 C -0.367 4.367 24 H 0.085 0.915 25 C -0.206 4.206 26 N -0.578 5.578 27 Si 0.731 3.269 28 H -0.207 1.207 29 H -0.219 1.219 30 H -0.218 1.218 31 H 0.071 0.929 32 H 0.053 0.947 33 H 0.065 0.935 34 H 0.096 0.904 35 H 0.080 0.920 36 H 0.069 0.931 37 H 0.076 0.924 38 H 0.085 0.915 39 H 0.229 0.771 40 H 0.161 0.839 41 H 0.164 0.836 42 H 0.159 0.841 43 H 0.174 0.826 44 H 0.220 0.780 45 H 0.217 0.783 46 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 5.708 11.667 -15.932 20.555 hybrid contribution -0.826 1.536 0.279 1.766 sum 4.882 13.202 -15.653 21.051 Atomic orbital electron populations 1.22461 0.99533 1.00845 0.99760 1.20223 0.91602 0.95487 0.86585 0.93717 1.22184 0.93521 1.02452 0.98863 1.21130 0.95317 0.79401 1.00224 0.87208 1.22189 1.01636 1.00292 0.97850 1.45877 1.15769 1.12103 1.61762 1.17759 0.82520 0.86380 0.78497 1.90653 1.50590 1.55715 1.42906 1.21084 0.94501 0.94350 1.00250 1.21182 0.98718 0.91940 0.96190 1.20948 0.96040 0.96769 1.02217 1.17621 0.94719 0.78297 0.99073 1.91515 1.92866 1.33228 1.93053 1.18040 0.95656 0.93180 0.99268 1.21793 0.94149 1.01733 1.00370 1.22371 0.99373 0.88942 0.95184 1.67735 1.18252 1.14432 1.18478 1.24492 0.86616 1.02040 0.88209 1.19619 0.95064 0.92485 0.99021 1.42399 1.77967 1.10573 1.05264 1.19175 1.36591 0.93624 0.87265 0.91516 1.24675 1.02157 0.95887 0.97858 1.69648 1.50977 1.08548 1.28620 0.86226 0.77402 0.78772 0.84462 1.20745 1.21940 1.21826 0.92901 0.94749 0.93496 0.90392 0.92010 0.93097 0.92353 0.91522 0.77119 0.83916 0.83638 0.84051 0.82614 0.78035 0.78304 0.93610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.75 9.49 37.16 0.35 -2.40 16 2 C 0.17 3.05 2.84 -67.93 -0.19 2.86 16 3 H 0.04 0.81 7.56 -51.93 -0.39 0.42 16 4 C -0.13 -1.83 4.29 -26.73 -0.11 -1.94 16 5 C 0.14 2.10 2.52 -67.93 -0.17 1.93 16 6 H 0.11 2.16 7.05 -51.93 -0.37 1.80 16 7 C -0.16 -1.99 9.48 37.16 0.35 -1.64 16 8 N -0.70 -9.18 4.40 -54.89 -0.24 -9.42 16 9 C 0.56 8.55 7.71 -12.53 -0.10 8.45 16 10 O -0.52 -9.78 13.31 5.27 0.07 -9.71 16 11 C -0.10 -1.25 6.05 -102.83 -0.62 -1.88 16 12 C -0.06 -0.58 9.51 -39.13 -0.37 -0.95 16 13 C -0.14 -1.24 9.90 -39.67 -0.39 -1.63 16 14 C 0.12 1.32 7.28 -38.97 -0.28 1.03 16 15 F -0.13 -1.33 16.72 2.25 0.04 -1.29 16 16 C -0.06 -0.69 5.75 -106.80 -0.61 -1.30 16 17 C -0.16 -1.80 9.70 -39.39 -0.38 -2.18 16 18 C 0.09 1.03 11.07 -17.96 -0.20 0.83 16 19 N -0.48 -7.31 10.30 -13.23 -0.14 -7.44 16 20 C 0.16 2.45 10.54 -17.09 -0.18 2.27 16 21 C -0.06 -0.84 5.90 -104.82 -0.62 -1.45 16 22 N -0.72 -17.06 4.49 -53.43 -0.24 -17.30 16 23 C -0.24 -6.40 9.93 -15.06 -0.15 -6.55 16 24 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 25 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 26 N -0.93 -28.04 13.06 55.49 0.72 -27.32 16 27 Si 0.90 22.85 29.55 -169.99 -5.02 17.82 16 28 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16 29 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 30 H -0.29 -7.54 7.11 56.52 0.40 -7.14 16 31 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 32 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 38 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.39 3.84 6.69 -40.82 -0.27 3.57 16 40 H 0.14 0.89 6.45 -52.49 -0.34 0.55 16 41 H 0.15 0.86 8.06 -52.49 -0.42 0.44 16 42 H 0.14 1.22 7.81 -52.49 -0.41 0.81 16 43 H 0.16 1.37 8.06 -52.49 -0.42 0.95 16 44 H 0.20 3.50 5.15 -52.49 -0.27 3.23 16 45 H 0.38 9.76 7.80 -40.82 -0.32 9.44 16 46 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 386.53 15.07 5.82 5.82 Total: -1.00 -33.14 386.53 -8.91 -42.05 By element: Atomic # 1 Polarization: 17.87 SS G_CDS: -6.14 Total: 11.72 kcal Atomic # 6 Polarization: -1.16 SS G_CDS: -3.78 Total: -4.94 kcal Atomic # 7 Polarization: -61.59 SS G_CDS: 0.11 Total: -61.48 kcal Atomic # 8 Polarization: -9.78 SS G_CDS: 0.07 Total: -9.71 kcal Atomic # 9 Polarization: -1.33 SS G_CDS: 0.04 Total: -1.29 kcal Atomic # 14 Polarization: 22.85 SS G_CDS: -5.02 Total: 17.82 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.14 -8.91 -42.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135280214.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.959 kcal (2) G-P(sol) polarization free energy of solvation -33.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds