Wall clock time and date at job start Wed Apr 1 2020 03:24:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.47025 * 2 1 4 4 C 1.52999 * 109.47459 * 239.99875 * 2 1 3 5 5 C 1.53004 * 109.47132 * 174.99677 * 4 2 1 6 6 H 1.09000 * 109.46883 * 55.00272 * 5 4 2 7 7 C 1.53002 * 109.47050 * 175.00098 * 5 4 2 8 8 N 1.46501 * 109.47124 * 294.99833 * 5 4 2 9 9 C 1.34777 * 119.99688 * 154.99762 * 8 5 4 10 10 O 1.21611 * 120.00258 * 0.02562 * 9 8 5 11 11 C 1.47393 * 119.99802 * 179.97438 * 9 8 5 12 12 C 1.38949 * 120.65937 * 354.26763 * 11 9 8 13 13 C 1.38738 * 120.73475 * 179.97438 * 12 11 9 14 14 C 1.37490 * 121.68035 * 0.02562 * 13 12 11 15 15 F 1.35105 * 119.85373 * 179.97438 * 14 13 12 16 16 C 1.40593 * 120.29666 * 359.95611 * 14 13 12 17 17 C 1.40583 * 122.25574 * 179.97438 * 16 14 13 18 18 C 1.36315 * 118.64970 * 180.02562 * 17 16 14 19 19 N 1.32484 * 121.87839 * 359.97438 * 18 17 16 20 20 C 1.31365 * 122.68493 * 0.02562 * 19 18 17 21 21 C 1.40013 * 119.85213 * 359.75230 * 20 19 18 22 22 N 1.46498 * 109.47201 * 119.99764 * 2 1 3 23 23 C 1.36939 * 119.99731 * 275.00180 * 22 2 1 24 24 H 1.07993 * 120.00199 * 0.02562 * 23 22 2 25 25 C 1.38818 * 119.99684 * 179.72472 * 23 22 2 26 26 N 1.31618 * 119.99829 * 0.27739 * 25 23 22 27 27 Si 1.86802 * 119.99995 * 180.27859 * 25 23 22 28 28 H 1.48497 * 109.46898 * 359.97438 * 27 25 23 29 29 H 1.48491 * 109.47258 * 119.99912 * 27 25 23 30 30 H 1.48500 * 109.46972 * 240.00011 * 27 25 23 31 31 H 1.08997 * 109.47119 * 300.00168 * 1 2 3 32 32 H 1.08998 * 109.46907 * 60.00361 * 1 2 3 33 33 H 1.08998 * 109.46600 * 179.97438 * 1 2 3 34 34 H 1.08995 * 109.47332 * 294.99648 * 4 2 1 35 35 H 1.08998 * 109.46974 * 54.99793 * 4 2 1 36 36 H 1.09001 * 109.46909 * 59.99827 * 7 5 4 37 37 H 1.08997 * 109.47211 * 180.02562 * 7 5 4 38 38 H 1.09003 * 109.47152 * 300.00539 * 7 5 4 39 39 H 0.96993 * 120.00270 * 335.00368 * 8 5 4 40 40 H 1.07997 * 119.62970 * 359.97438 * 12 11 9 41 41 H 1.07997 * 119.15684 * 179.97438 * 13 12 11 42 42 H 1.07998 * 120.67646 * 0.02562 * 17 16 14 43 43 H 1.07997 * 119.05956 * 179.97438 * 18 17 16 44 44 H 1.08001 * 120.07269 * 180.02562 * 20 19 18 45 45 H 0.97001 * 120.00019 * 95.00636 * 22 2 1 46 46 H 0.96999 * 120.00014 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5649 -0.6132 -1.3136 6 1 3.9954 -0.9921 -0.3867 7 6 4.0853 -1.4382 -2.4924 8 7 3.9479 0.7895 -1.4924 9 6 5.1611 1.2137 -1.0866 10 8 5.9380 0.4321 -0.5725 11 6 5.5467 2.6248 -1.2671 12 6 4.7206 3.5022 -1.9588 13 6 5.0818 4.8309 -2.1291 14 6 6.2604 5.3290 -1.6259 15 9 6.5757 6.6292 -1.8139 16 6 7.1388 4.4915 -0.9163 17 6 8.3541 4.9570 -0.3848 18 6 9.1505 4.0806 0.2904 19 7 8.8099 2.8112 0.4571 20 6 7.6903 2.3096 -0.0124 21 6 6.8007 3.1297 -0.7171 22 7 2.0183 -0.6905 1.1962 23 6 2.1491 -0.0073 2.3757 24 1 1.8918 1.0404 2.4243 25 6 2.6064 -0.6630 3.5106 26 7 2.9195 -1.9401 3.4515 27 14 2.7773 0.2670 5.1216 28 1 2.3646 1.6797 4.9237 29 1 1.9118 -0.3625 6.1509 30 1 4.1922 0.2234 5.5705 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3632 -1.0277 -0.0005 34 1 1.7518 -1.7715 -1.2055 35 1 1.6054 -0.2618 -2.1369 36 1 3.6547 -1.0593 -3.4193 37 1 5.1716 -1.3616 -2.5380 38 1 3.8002 -2.4818 -2.3594 39 1 3.3284 1.4129 -1.9028 40 1 3.7870 3.1459 -2.3684 41 1 4.4206 5.4905 -2.6714 42 1 8.6508 5.9880 -0.5088 43 1 10.0859 4.4311 0.7011 44 1 7.4544 1.2681 0.1486 45 1 2.2491 -1.6317 1.1526 46 1 3.2387 -2.3984 4.2445 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135280214.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:24:05 Heat of formation + Delta-G solvation = -37.683832 kcal Electronic energy + Delta-G solvation = -30267.092415 eV Core-core repulsion = 26070.462714 eV Total energy + Delta-G solvation = -4196.629700 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 2.64 seconds Orbital eigenvalues (eV) -50.16716 -41.97337 -40.63257 -38.40123 -38.01229 -36.09928 -34.12536 -33.76948 -32.33026 -32.27037 -30.51414 -30.13266 -27.55781 -25.97626 -25.62498 -24.85928 -24.48065 -22.42399 -21.77567 -21.19645 -19.55863 -19.25905 -18.99535 -18.69753 -17.73510 -17.15294 -16.91827 -16.71723 -16.38822 -16.04550 -15.94602 -15.64003 -15.60409 -15.41185 -15.07717 -14.84640 -14.54945 -14.29330 -14.20960 -13.95850 -13.57266 -13.54786 -13.33966 -13.16571 -12.94030 -12.86639 -12.78065 -12.65415 -12.61122 -12.20625 -12.15147 -11.79402 -11.53443 -11.38389 -11.20710 -10.95518 -10.89329 -10.56412 -10.38131 -10.04830 -9.13622 -8.92317 -7.91432 -5.15594 -1.15620 -0.34351 0.37105 1.40817 1.43541 1.47982 1.50601 2.05617 2.22370 2.56000 2.79223 2.85830 3.30331 3.38161 3.43884 3.49237 3.59532 3.67577 3.75504 3.87138 4.05039 4.16680 4.22963 4.33450 4.44955 4.52951 4.57885 4.59581 4.68402 4.72737 4.83681 4.84158 4.86263 4.90224 4.95222 5.00310 5.08592 5.15112 5.27374 5.39150 5.44543 5.49598 5.52749 5.57666 5.66733 5.69315 6.32592 6.56969 6.86101 7.27895 7.38616 8.20203 8.38343 9.32564 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.009300 B = 0.003691 C = 0.003205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3010.002305 B = 7583.836479 C = 8735.547168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.162 3.838 3 H 0.046 0.954 4 C -0.118 4.118 5 C 0.146 3.854 6 H 0.049 0.951 7 C -0.152 4.152 8 N -0.691 5.691 9 C 0.555 3.445 10 O -0.572 6.572 11 C -0.129 4.129 12 C -0.031 4.031 13 C -0.126 4.126 14 C 0.123 3.877 15 F -0.123 7.123 16 C -0.072 4.072 17 C -0.146 4.146 18 C 0.068 3.932 19 N -0.507 5.507 20 C 0.121 3.879 21 C -0.072 4.072 22 N -0.732 5.732 23 C -0.220 4.220 24 H 0.070 0.930 25 C -0.076 4.076 26 N -0.967 5.967 27 Si 0.953 3.047 28 H -0.267 1.267 29 H -0.292 1.292 30 H -0.304 1.304 31 H 0.027 0.973 32 H 0.079 0.921 33 H 0.040 0.960 34 H 0.076 0.924 35 H 0.112 0.888 36 H 0.085 0.915 37 H 0.037 0.963 38 H 0.068 0.932 39 H 0.413 0.587 40 H 0.183 0.817 41 H 0.189 0.811 42 H 0.173 0.827 43 H 0.186 0.814 44 H 0.173 0.827 45 H 0.370 0.630 46 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.264 16.061 -20.073 25.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.054 3.946 3 H 0.064 0.936 4 C -0.156 4.156 5 C 0.042 3.958 6 H 0.068 0.932 7 C -0.210 4.210 8 N -0.343 5.343 9 C 0.343 3.657 10 O -0.453 6.453 11 C -0.134 4.134 12 C -0.050 4.050 13 C -0.146 4.146 14 C 0.104 3.896 15 F -0.101 7.101 16 C -0.078 4.078 17 C -0.166 4.166 18 C -0.076 4.076 19 N -0.215 5.215 20 C -0.047 4.047 21 C -0.075 4.075 22 N -0.372 5.372 23 C -0.353 4.353 24 H 0.088 0.912 25 C -0.268 4.268 26 N -0.619 5.619 27 Si 0.784 3.216 28 H -0.192 1.192 29 H -0.219 1.219 30 H -0.232 1.232 31 H 0.046 0.954 32 H 0.098 0.902 33 H 0.059 0.941 34 H 0.094 0.906 35 H 0.130 0.870 36 H 0.104 0.896 37 H 0.057 0.943 38 H 0.087 0.913 39 H 0.252 0.748 40 H 0.201 0.799 41 H 0.206 0.794 42 H 0.190 0.810 43 H 0.203 0.797 44 H 0.190 0.810 45 H 0.202 0.798 46 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 3.437 15.268 -19.138 24.722 hybrid contribution -0.162 0.581 1.130 1.281 sum 3.275 15.849 -18.008 24.212 Atomic orbital electron populations 1.22314 0.97768 1.00813 1.00770 1.20559 0.92607 0.95407 0.85991 0.93599 1.22094 0.92510 1.02394 0.98621 1.20896 0.95789 0.80495 0.98635 0.93233 1.22087 1.00456 1.00242 0.98186 1.45697 1.15460 1.11859 1.61243 1.18228 0.82531 0.87244 0.77712 1.90650 1.52160 1.57316 1.45164 1.20930 0.95502 0.93687 1.03310 1.21646 0.98753 0.91488 0.93096 1.21403 0.95507 0.96766 1.00915 1.17712 0.94970 0.78259 0.98687 1.91536 1.92900 1.32741 1.92924 1.18275 0.96727 0.92753 1.00088 1.22172 0.93203 1.02814 0.98374 1.22853 1.00846 0.88000 0.95947 1.67626 1.18392 1.16430 1.19077 1.24089 0.88193 1.01566 0.90819 1.19655 0.95420 0.93230 0.99196 1.42629 1.78137 1.10140 1.06308 1.19514 1.33668 0.93702 0.88388 0.91209 1.25351 1.03823 0.96737 1.00894 1.69787 1.53365 1.09966 1.28772 0.85350 0.76379 0.78491 0.81352 1.19153 1.21913 1.23228 0.95357 0.90201 0.94086 0.90560 0.86996 0.89615 0.94338 0.91272 0.74808 0.79946 0.79390 0.80958 0.79708 0.81002 0.79819 0.94480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.75 9.49 71.98 0.68 -4.07 16 2 C 0.16 5.50 2.84 44.99 0.13 5.62 16 3 H 0.05 1.55 7.56 -2.39 -0.02 1.54 16 4 C -0.12 -2.96 4.29 30.60 0.13 -2.83 16 5 C 0.15 4.24 2.52 44.99 0.11 4.35 16 6 H 0.05 2.08 7.05 -2.39 -0.02 2.07 16 7 C -0.15 -3.59 9.48 71.98 0.68 -2.91 16 8 N -0.69 -17.12 4.40 -445.82 -1.96 -19.08 16 9 C 0.55 17.41 7.71 86.65 0.67 18.08 16 10 O -0.57 -23.68 13.31 -4.06 -0.05 -23.74 16 11 C -0.13 -3.28 6.05 -18.70 -0.11 -3.40 16 12 C -0.03 -0.46 9.51 22.56 0.21 -0.25 16 13 C -0.13 -1.62 9.90 22.21 0.22 -1.40 16 14 C 0.12 2.24 7.28 22.67 0.17 2.40 16 15 F -0.12 -2.06 16.72 44.97 0.75 -1.31 16 16 C -0.07 -1.71 5.75 -21.27 -0.12 -1.84 16 17 C -0.15 -3.09 9.70 22.39 0.22 -2.87 16 18 C 0.07 1.65 11.07 84.15 0.93 2.58 16 19 N -0.51 -16.55 10.30 -195.77 -2.02 -18.57 16 20 C 0.12 4.22 10.54 85.19 0.90 5.12 16 21 C -0.07 -2.11 5.90 -19.99 -0.12 -2.22 16 22 N -0.73 -35.22 4.49 -322.95 -1.45 -36.67 16 23 C -0.22 -12.18 9.93 84.03 0.83 -11.35 16 24 H 0.07 3.75 7.83 -2.91 -0.02 3.73 16 25 C -0.08 -4.48 5.50 84.86 0.47 -4.02 16 26 N -0.97 -60.97 13.06 21.65 0.28 -60.68 16 27 Si 0.95 48.33 29.55 68.60 2.03 50.35 16 28 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 29 H -0.29 -14.62 7.11 99.48 0.71 -13.92 16 30 H -0.30 -15.92 7.11 99.48 0.71 -15.21 16 31 H 0.03 0.97 8.14 -2.39 -0.02 0.96 16 32 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 35 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 36 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.41 6.47 6.69 -92.71 -0.62 5.85 16 40 H 0.18 1.17 6.45 -2.91 -0.02 1.15 16 41 H 0.19 0.90 8.06 -2.91 -0.02 0.87 16 42 H 0.17 2.45 7.81 -2.91 -0.02 2.43 16 43 H 0.19 3.11 8.06 -2.91 -0.02 3.08 16 44 H 0.17 6.93 5.15 -2.91 -0.01 6.91 16 45 H 0.37 19.60 7.80 -92.71 -0.72 18.87 16 46 H 0.25 15.25 8.31 -92.71 -0.77 14.47 16 Total: -1.00 -80.41 386.53 3.27 -77.14 By element: Atomic # 1 Polarization: 31.86 SS G_CDS: -0.31 Total: 31.55 kcal Atomic # 6 Polarization: -5.00 SS G_CDS: 6.00 Total: 1.00 kcal Atomic # 7 Polarization: -129.85 SS G_CDS: -5.15 Total: -135.00 kcal Atomic # 8 Polarization: -23.68 SS G_CDS: -0.05 Total: -23.74 kcal Atomic # 9 Polarization: -2.06 SS G_CDS: 0.75 Total: -1.31 kcal Atomic # 14 Polarization: 48.33 SS G_CDS: 2.03 Total: 50.35 kcal Total: -80.41 3.27 -77.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135280214.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.459 kcal (2) G-P(sol) polarization free energy of solvation -80.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.64 seconds