Wall clock time and date at job start Wed Apr 1 2020 03:24:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.52997 * 109.47164 * 120.00004 * 2 1 3 5 5 C 1.52996 * 109.46894 * 184.99623 * 4 2 1 6 6 H 1.09000 * 109.47333 * 305.00136 * 5 4 2 7 7 C 1.53005 * 109.46993 * 185.00056 * 5 4 2 8 8 N 1.46500 * 109.47059 * 65.00370 * 5 4 2 9 9 C 1.34781 * 119.99835 * 204.99719 * 8 5 4 10 10 O 1.21592 * 119.99936 * 359.97438 * 9 8 5 11 11 C 1.47443 * 119.99609 * 180.02562 * 9 8 5 12 12 C 1.38714 * 120.31922 * 359.97438 * 11 9 8 13 13 C 1.39100 * 120.69718 * 180.02562 * 12 11 9 14 14 F 1.35095 * 119.50034 * 179.97438 * 13 12 11 15 15 C 1.36539 * 121.00295 * 0.02562 * 13 12 11 16 16 C 1.40414 * 120.07201 * 359.95268 * 15 13 12 17 17 C 1.40816 * 121.24188 * 180.02562 * 16 15 13 18 18 C 1.36634 * 118.15618 * 179.21845 * 17 16 15 19 19 C 1.39240 * 119.90430 * 0.76509 * 18 17 16 20 20 N 1.31221 * 121.69760 * 359.48972 * 19 18 17 21 21 C 1.33357 * 121.36059 * 359.96655 * 20 19 18 22 22 N 1.46500 * 109.46998 * 240.00054 * 2 1 3 23 23 C 1.36936 * 119.99910 * 84.99534 * 22 2 1 24 24 H 1.07996 * 119.99948 * 0.02562 * 23 22 2 25 25 C 1.38815 * 119.99722 * 180.02562 * 23 22 2 26 26 N 1.31621 * 120.00278 * 0.02562 * 25 23 22 27 27 Si 1.86801 * 119.99762 * 180.02562 * 25 23 22 28 28 H 1.48500 * 109.47275 * 359.97438 * 27 25 23 29 29 H 1.48492 * 109.47411 * 120.00175 * 27 25 23 30 30 H 1.48503 * 109.46970 * 240.00025 * 27 25 23 31 31 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 32 32 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 33 33 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 34 34 H 1.08994 * 109.47510 * 305.00071 * 4 2 1 35 35 H 1.09001 * 109.47096 * 64.99934 * 4 2 1 36 36 H 1.09000 * 109.47146 * 300.00194 * 7 5 4 37 37 H 1.09003 * 109.47291 * 60.00559 * 7 5 4 38 38 H 1.09000 * 109.46901 * 180.02562 * 7 5 4 39 39 H 0.97002 * 119.99992 * 25.00166 * 8 5 4 40 40 H 1.08000 * 119.65134 * 0.02562 * 12 11 9 41 41 H 1.07996 * 119.96658 * 179.97438 * 15 13 12 42 42 H 1.08001 * 120.91894 * 359.94488 * 17 16 15 43 43 H 1.07997 * 120.05047 * 180.22408 * 18 17 16 44 44 H 1.08000 * 119.14912 * 179.45611 * 19 18 17 45 45 H 0.96997 * 120.00110 * 265.00363 * 22 2 1 46 46 H 0.96997 * 119.99556 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5649 -0.6133 1.3135 6 1 3.9954 -0.9923 0.3866 7 6 4.0852 -1.4384 2.4923 8 7 3.9480 0.7893 1.4923 9 6 5.1613 1.2135 1.0865 10 8 5.9380 0.4318 0.5725 11 6 5.5471 2.6250 1.2670 12 6 4.6664 3.5222 1.8531 13 6 5.0219 4.8558 2.0267 14 9 4.1452 5.7089 2.5999 15 6 6.2433 5.3159 1.6257 16 6 7.1639 4.4398 1.0285 17 6 8.4303 4.8877 0.6062 18 6 9.2828 3.9778 0.0476 19 6 8.8818 2.6531 -0.1044 20 7 7.6984 2.2418 0.2858 21 6 6.8239 3.0771 0.8480 22 7 2.0184 -0.6906 -1.1962 23 6 2.1490 -0.0075 -2.3758 24 1 1.8925 1.0405 -2.4241 25 6 2.6112 -0.6620 -3.5093 26 7 2.9234 -1.9393 -3.4505 27 14 2.7902 0.2700 -5.1183 28 1 2.3762 1.6824 -4.9209 29 1 4.2069 0.2262 -5.5608 30 1 1.9289 -0.3578 -6.1524 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3633 -1.0277 -0.0005 34 1 1.6055 -0.2618 2.1369 35 1 1.7517 -1.7715 1.2056 36 1 3.6547 -1.0594 3.4192 37 1 3.8002 -2.4820 2.3593 38 1 5.1715 -1.3611 2.5384 39 1 3.3285 1.4128 1.9028 40 1 3.6943 3.1818 2.1781 41 1 6.5018 6.3547 1.7682 42 1 8.7241 5.9195 0.7313 43 1 10.2630 4.2874 -0.2836 44 1 9.5621 1.9459 -0.5555 45 1 2.2490 -1.6317 -1.1527 46 1 3.2460 -2.3967 -4.2427 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135593575.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:24:34 Heat of formation + Delta-G solvation = -10.638393 kcal Electronic energy + Delta-G solvation = -30315.670040 eV Core-core repulsion = 26120.213119 eV Total energy + Delta-G solvation = -4195.456922 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -49.22269 -41.12469 -39.31108 -37.02641 -36.60436 -34.39429 -33.67477 -32.17389 -31.26667 -30.35223 -29.67755 -28.53551 -26.27841 -25.06263 -23.84291 -23.63781 -23.45758 -21.15842 -20.34244 -19.68544 -18.89190 -18.05823 -17.57060 -17.15049 -16.38447 -15.98707 -15.89535 -15.52970 -15.15922 -14.85275 -14.70529 -14.51366 -14.05918 -13.92071 -13.68749 -13.48060 -13.33204 -13.22539 -12.90272 -12.64918 -12.55619 -12.10442 -11.94125 -11.85506 -11.68645 -11.57170 -11.54385 -11.00055 -10.80216 -10.73211 -10.55717 -10.36521 -10.15451 -9.85930 -9.82816 -9.56547 -9.15383 -9.03431 -8.82451 -8.65913 -8.45835 -6.85779 -5.67238 -2.94732 -0.16455 0.45946 1.52618 2.35617 3.29851 3.39816 3.49117 3.54244 3.56556 3.80855 3.97886 4.05424 4.24260 4.38356 4.56743 4.62562 4.67504 4.75901 4.95193 5.10179 5.23253 5.30461 5.42034 5.48307 5.52556 5.57240 5.60062 5.67789 5.74788 5.76165 5.90648 5.94358 6.00234 6.06274 6.17376 6.19325 6.33664 6.41864 6.48214 6.49165 6.62118 6.77486 6.86497 6.98510 7.12002 7.78629 7.79076 7.90168 8.51238 8.62309 9.62769 10.20092 10.54292 11.55662 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.008812 B = 0.003828 C = 0.003358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3176.634250 B = 7312.794521 C = 8336.133896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.171 3.829 3 H 0.045 0.955 4 C -0.131 4.131 5 C 0.146 3.854 6 H 0.107 0.893 7 C -0.161 4.161 8 N -0.715 5.715 9 C 0.551 3.449 10 O -0.482 6.482 11 C -0.061 4.061 12 C -0.104 4.104 13 C 0.100 3.900 14 F -0.134 7.134 15 C -0.117 4.117 16 C -0.087 4.087 17 C -0.063 4.063 18 C -0.165 4.165 19 C 0.131 3.869 20 N -0.425 5.425 21 C 0.151 3.849 22 N -0.720 5.720 23 C -0.232 4.232 24 H 0.067 0.933 25 C -0.011 4.011 26 N -0.930 5.930 27 Si 0.900 3.100 28 H -0.282 1.282 29 H -0.292 1.292 30 H -0.292 1.292 31 H 0.034 0.966 32 H 0.051 0.949 33 H 0.046 0.954 34 H 0.061 0.939 35 H 0.076 0.924 36 H 0.049 0.951 37 H 0.064 0.936 38 H 0.056 0.944 39 H 0.390 0.610 40 H 0.148 0.852 41 H 0.145 0.855 42 H 0.142 0.858 43 H 0.140 0.860 44 H 0.163 0.837 45 H 0.383 0.617 46 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.459 14.102 15.729 22.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.061 3.939 3 H 0.063 0.937 4 C -0.170 4.170 5 C 0.042 3.958 6 H 0.125 0.875 7 C -0.219 4.219 8 N -0.368 5.368 9 C 0.336 3.664 10 O -0.355 6.355 11 C -0.065 4.065 12 C -0.126 4.126 13 C 0.081 3.919 14 F -0.112 7.112 15 C -0.137 4.137 16 C -0.089 4.089 17 C -0.089 4.089 18 C -0.185 4.185 19 C -0.042 4.042 20 N -0.132 5.132 21 C 0.027 3.973 22 N -0.362 5.362 23 C -0.364 4.364 24 H 0.085 0.915 25 C -0.207 4.207 26 N -0.579 5.579 27 Si 0.732 3.268 28 H -0.208 1.208 29 H -0.219 1.219 30 H -0.220 1.220 31 H 0.053 0.947 32 H 0.071 0.929 33 H 0.065 0.935 34 H 0.079 0.921 35 H 0.095 0.905 36 H 0.068 0.932 37 H 0.083 0.917 38 H 0.075 0.925 39 H 0.224 0.776 40 H 0.165 0.835 41 H 0.163 0.837 42 H 0.160 0.840 43 H 0.158 0.842 44 H 0.180 0.820 45 H 0.217 0.783 46 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 8.659 12.760 15.154 21.620 hybrid contribution -0.160 1.670 -0.622 1.789 sum 8.499 14.430 14.531 22.172 Atomic orbital electron populations 1.22460 0.99559 1.00801 0.99733 1.20223 0.91538 0.95528 0.86597 0.93721 1.22173 0.93740 1.02276 0.98777 1.21037 0.95049 0.79709 0.99987 0.87465 1.22185 1.01606 1.00159 0.97949 1.45921 1.16114 1.11818 1.62924 1.17657 0.82631 0.86433 0.79718 1.90893 1.50157 1.54571 1.39846 1.19977 0.92618 0.94886 0.98978 1.21411 1.00604 0.91526 0.99022 1.17105 0.88344 0.87648 0.98812 1.91540 1.68011 1.69537 1.82141 1.21010 0.92359 1.00736 0.99598 1.18514 0.95691 0.93826 1.00915 1.21396 0.91679 1.00310 0.95535 1.22024 1.01241 0.94819 1.00398 1.23265 0.92799 0.94233 0.93898 1.68364 1.01788 1.35749 1.07258 1.18657 0.93441 0.88887 0.96291 1.42393 1.77946 1.10559 1.05253 1.19187 1.36237 0.93630 0.87317 0.91543 1.24673 1.02246 0.95920 0.97878 1.69654 1.51095 1.08559 1.28589 0.86211 0.77321 0.78783 0.84471 1.20761 1.21929 1.21980 0.94737 0.92940 0.93515 0.92084 0.90528 0.93208 0.91695 0.92451 0.77576 0.83453 0.83691 0.84041 0.84177 0.81973 0.78318 0.93686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.92 9.49 37.16 0.35 -2.56 16 2 C 0.17 3.28 2.84 -67.93 -0.19 3.09 16 3 H 0.04 0.88 7.56 -51.93 -0.39 0.49 16 4 C -0.13 -2.01 4.29 -26.73 -0.11 -2.13 16 5 C 0.15 2.41 2.52 -67.93 -0.17 2.24 16 6 H 0.11 2.33 7.05 -51.93 -0.37 1.96 16 7 C -0.16 -2.26 9.48 37.16 0.35 -1.90 16 8 N -0.71 -10.90 4.40 -54.88 -0.24 -11.14 16 9 C 0.55 9.84 7.73 -12.51 -0.10 9.75 16 10 O -0.48 -10.67 14.84 5.28 0.08 -10.59 16 11 C -0.06 -0.91 5.90 -104.62 -0.62 -1.53 16 12 C -0.10 -1.22 9.49 -39.09 -0.37 -1.59 16 13 C 0.10 1.08 7.22 -39.88 -0.29 0.79 16 14 F -0.13 -1.41 17.24 2.25 0.04 -1.37 16 15 C -0.12 -1.14 9.71 -39.38 -0.38 -1.53 16 16 C -0.09 -1.00 5.74 -106.82 -0.61 -1.62 16 17 C -0.06 -0.55 9.89 -39.19 -0.39 -0.94 16 18 C -0.16 -1.44 10.03 -39.79 -0.40 -1.84 16 19 C 0.13 1.57 11.15 -17.44 -0.19 1.37 16 20 N -0.43 -7.00 8.43 -10.76 -0.09 -7.09 16 21 C 0.15 2.28 6.61 -84.57 -0.56 1.72 16 22 N -0.72 -17.92 4.49 -53.42 -0.24 -18.16 16 23 C -0.23 -6.57 9.93 -15.06 -0.15 -6.72 16 24 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 25 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 26 N -0.93 -28.85 13.06 55.49 0.72 -28.12 16 27 Si 0.90 23.39 29.55 -169.99 -5.02 18.36 16 28 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 29 H -0.29 -7.71 7.11 56.52 0.40 -7.31 16 30 H -0.29 -7.56 7.11 56.52 0.40 -7.16 16 31 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 36 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.39 4.68 6.62 -40.82 -0.27 4.41 16 40 H 0.15 1.36 6.36 -52.49 -0.33 1.03 16 41 H 0.15 0.97 8.06 -52.49 -0.42 0.55 16 42 H 0.14 0.74 8.06 -52.49 -0.42 0.32 16 43 H 0.14 0.73 8.06 -52.49 -0.42 0.31 16 44 H 0.16 1.54 8.06 -52.49 -0.42 1.12 16 45 H 0.38 10.21 7.80 -40.82 -0.32 9.89 16 46 H 0.25 7.64 8.31 -40.82 -0.34 7.30 16 LS Contribution 389.77 15.07 5.87 5.87 Total: -1.00 -36.09 389.77 -9.11 -45.20 By element: Atomic # 1 Polarization: 17.17 SS G_CDS: -6.30 Total: 10.87 kcal Atomic # 6 Polarization: 0.10 SS G_CDS: -3.93 Total: -3.83 kcal Atomic # 7 Polarization: -64.66 SS G_CDS: 0.15 Total: -64.51 kcal Atomic # 8 Polarization: -10.67 SS G_CDS: 0.08 Total: -10.59 kcal Atomic # 9 Polarization: -1.41 SS G_CDS: 0.04 Total: -1.37 kcal Atomic # 14 Polarization: 23.39 SS G_CDS: -5.02 Total: 18.36 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -36.09 -9.11 -45.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135593575.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.563 kcal (2) G-P(sol) polarization free energy of solvation -36.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds