Wall clock time and date at job start Wed Apr 1 2020 03:24:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.52997 * 109.47164 * 120.00004 * 2 1 3 5 5 C 1.52996 * 109.46894 * 184.99623 * 4 2 1 6 6 H 1.09000 * 109.47333 * 305.00136 * 5 4 2 7 7 C 1.53005 * 109.46993 * 185.00056 * 5 4 2 8 8 N 1.46500 * 109.47059 * 65.00370 * 5 4 2 9 9 C 1.34781 * 119.99835 * 204.99719 * 8 5 4 10 10 O 1.21592 * 119.99936 * 359.97438 * 9 8 5 11 11 C 1.47443 * 119.99609 * 180.02562 * 9 8 5 12 12 C 1.38714 * 120.31922 * 359.97438 * 11 9 8 13 13 C 1.39100 * 120.69718 * 180.02562 * 12 11 9 14 14 F 1.35095 * 119.50034 * 179.97438 * 13 12 11 15 15 C 1.36539 * 121.00295 * 0.02562 * 13 12 11 16 16 C 1.40414 * 120.07201 * 359.95268 * 15 13 12 17 17 C 1.40816 * 121.24188 * 180.02562 * 16 15 13 18 18 C 1.36634 * 118.15618 * 179.21845 * 17 16 15 19 19 C 1.39240 * 119.90430 * 0.76509 * 18 17 16 20 20 N 1.31221 * 121.69760 * 359.48972 * 19 18 17 21 21 C 1.33357 * 121.36059 * 359.96655 * 20 19 18 22 22 N 1.46500 * 109.46998 * 240.00054 * 2 1 3 23 23 C 1.36936 * 119.99910 * 84.99534 * 22 2 1 24 24 H 1.07996 * 119.99948 * 0.02562 * 23 22 2 25 25 C 1.38815 * 119.99722 * 180.02562 * 23 22 2 26 26 N 1.31621 * 120.00278 * 0.02562 * 25 23 22 27 27 Si 1.86801 * 119.99762 * 180.02562 * 25 23 22 28 28 H 1.48500 * 109.47275 * 359.97438 * 27 25 23 29 29 H 1.48492 * 109.47411 * 120.00175 * 27 25 23 30 30 H 1.48503 * 109.46970 * 240.00025 * 27 25 23 31 31 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 32 32 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 33 33 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 34 34 H 1.08994 * 109.47510 * 305.00071 * 4 2 1 35 35 H 1.09001 * 109.47096 * 64.99934 * 4 2 1 36 36 H 1.09000 * 109.47146 * 300.00194 * 7 5 4 37 37 H 1.09003 * 109.47291 * 60.00559 * 7 5 4 38 38 H 1.09000 * 109.46901 * 180.02562 * 7 5 4 39 39 H 0.97002 * 119.99992 * 25.00166 * 8 5 4 40 40 H 1.08000 * 119.65134 * 0.02562 * 12 11 9 41 41 H 1.07996 * 119.96658 * 179.97438 * 15 13 12 42 42 H 1.08001 * 120.91894 * 359.94488 * 17 16 15 43 43 H 1.07997 * 120.05047 * 180.22408 * 18 17 16 44 44 H 1.08000 * 119.14912 * 179.45611 * 19 18 17 45 45 H 0.96997 * 120.00110 * 265.00363 * 22 2 1 46 46 H 0.96997 * 119.99556 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5649 -0.6133 1.3135 6 1 3.9954 -0.9923 0.3866 7 6 4.0852 -1.4384 2.4923 8 7 3.9480 0.7893 1.4923 9 6 5.1613 1.2135 1.0865 10 8 5.9380 0.4318 0.5725 11 6 5.5471 2.6250 1.2670 12 6 4.6664 3.5222 1.8531 13 6 5.0219 4.8558 2.0267 14 9 4.1452 5.7089 2.5999 15 6 6.2433 5.3159 1.6257 16 6 7.1639 4.4398 1.0285 17 6 8.4303 4.8877 0.6062 18 6 9.2828 3.9778 0.0476 19 6 8.8818 2.6531 -0.1044 20 7 7.6984 2.2418 0.2858 21 6 6.8239 3.0771 0.8480 22 7 2.0184 -0.6906 -1.1962 23 6 2.1490 -0.0075 -2.3758 24 1 1.8925 1.0405 -2.4241 25 6 2.6112 -0.6620 -3.5093 26 7 2.9234 -1.9393 -3.4505 27 14 2.7902 0.2700 -5.1183 28 1 2.3762 1.6824 -4.9209 29 1 4.2069 0.2262 -5.5608 30 1 1.9289 -0.3578 -6.1524 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3633 -1.0277 -0.0005 34 1 1.6055 -0.2618 2.1369 35 1 1.7517 -1.7715 1.2056 36 1 3.6547 -1.0594 3.4192 37 1 3.8002 -2.4820 2.3593 38 1 5.1715 -1.3611 2.5384 39 1 3.3285 1.4128 1.9028 40 1 3.6943 3.1818 2.1781 41 1 6.5018 6.3547 1.7682 42 1 8.7241 5.9195 0.7313 43 1 10.2630 4.2874 -0.2836 44 1 9.5621 1.9459 -0.5555 45 1 2.2490 -1.6317 -1.1527 46 1 3.2460 -2.3967 -4.2427 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135593575.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:24:32 Heat of formation + Delta-G solvation = -35.032306 kcal Electronic energy + Delta-G solvation = -30316.727840 eV Core-core repulsion = 26120.213119 eV Total energy + Delta-G solvation = -4196.514721 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 2.59 seconds Orbital eigenvalues (eV) -50.01912 -42.04631 -40.55876 -38.31666 -37.74755 -36.04262 -34.59231 -34.01535 -32.49161 -31.27929 -30.77204 -30.34447 -27.60059 -26.01232 -25.66289 -24.71896 -24.47990 -22.39290 -21.60224 -21.21254 -19.82249 -19.30308 -18.94395 -18.43819 -17.44990 -17.07939 -16.82229 -16.64931 -16.44066 -16.03520 -15.95479 -15.66501 -15.54207 -15.40040 -15.05918 -14.64172 -14.55919 -14.22437 -14.12941 -13.99566 -13.61642 -13.36333 -13.35261 -13.17276 -12.95559 -12.81606 -12.68825 -12.65615 -12.46857 -12.23966 -12.17319 -11.83274 -11.61656 -11.55351 -11.42379 -11.07806 -10.93241 -10.18331 -10.00094 -9.86137 -9.36251 -8.95229 -7.93325 -5.18189 -1.03215 -0.38947 0.68295 1.38614 1.41323 1.48203 1.49107 2.11081 2.24344 2.54192 2.95968 3.02910 3.20734 3.39819 3.41284 3.57691 3.73992 3.82341 3.91547 3.97954 4.01864 4.12029 4.25255 4.32204 4.41215 4.50858 4.54426 4.59193 4.68728 4.69626 4.78963 4.81459 4.83978 4.94149 4.99445 5.04275 5.10345 5.14446 5.24083 5.34671 5.41917 5.42524 5.50514 5.63055 5.66990 5.70031 6.30333 6.61787 7.01553 7.35863 7.36945 8.16571 8.35971 9.30786 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.008812 B = 0.003828 C = 0.003358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3176.634250 B = 7312.794521 C = 8336.133896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.163 3.837 3 H 0.040 0.960 4 C -0.117 4.117 5 C 0.149 3.851 6 H 0.046 0.954 7 C -0.150 4.150 8 N -0.703 5.703 9 C 0.545 3.455 10 O -0.543 6.543 11 C -0.105 4.105 12 C -0.084 4.084 13 C 0.086 3.914 14 F -0.130 7.130 15 C -0.088 4.088 16 C -0.102 4.102 17 C -0.048 4.048 18 C -0.162 4.162 19 C 0.119 3.881 20 N -0.496 5.496 21 C 0.123 3.877 22 N -0.731 5.731 23 C -0.224 4.224 24 H 0.068 0.932 25 C -0.078 4.078 26 N -0.968 5.968 27 Si 0.958 3.042 28 H -0.268 1.268 29 H -0.302 1.302 30 H -0.289 1.289 31 H 0.078 0.922 32 H 0.028 0.972 33 H 0.043 0.957 34 H 0.109 0.891 35 H 0.078 0.922 36 H 0.083 0.917 37 H 0.071 0.929 38 H 0.034 0.966 39 H 0.407 0.593 40 H 0.167 0.833 41 H 0.187 0.813 42 H 0.190 0.810 43 H 0.182 0.818 44 H 0.172 0.828 45 H 0.370 0.630 46 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.094 18.044 17.789 26.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.055 3.945 3 H 0.058 0.942 4 C -0.156 4.156 5 C 0.044 3.956 6 H 0.064 0.936 7 C -0.208 4.208 8 N -0.356 5.356 9 C 0.332 3.668 10 O -0.420 6.420 11 C -0.109 4.109 12 C -0.105 4.105 13 C 0.067 3.933 14 F -0.108 7.108 15 C -0.107 4.107 16 C -0.105 4.105 17 C -0.074 4.074 18 C -0.181 4.181 19 C -0.052 4.052 20 N -0.203 5.203 21 C 0.000 4.000 22 N -0.372 5.372 23 C -0.356 4.356 24 H 0.086 0.914 25 C -0.270 4.270 26 N -0.619 5.619 27 Si 0.789 3.211 28 H -0.192 1.192 29 H -0.230 1.230 30 H -0.216 1.216 31 H 0.097 0.903 32 H 0.048 0.952 33 H 0.062 0.938 34 H 0.127 0.873 35 H 0.097 0.903 36 H 0.102 0.898 37 H 0.090 0.910 38 H 0.053 0.947 39 H 0.245 0.755 40 H 0.185 0.815 41 H 0.204 0.796 42 H 0.207 0.793 43 H 0.199 0.801 44 H 0.189 0.811 45 H 0.202 0.798 46 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 8.229 16.765 17.271 25.438 hybrid contribution 0.012 0.563 -1.176 1.304 sum 8.240 17.328 16.095 25.045 Atomic orbital electron populations 1.22299 0.97525 1.00940 1.00750 1.20530 0.92756 0.95160 0.86062 0.94170 1.22084 0.92503 1.02403 0.98564 1.20834 0.95735 0.80635 0.98371 0.93610 1.22072 1.00220 1.00306 0.98191 1.45792 1.15835 1.11699 1.62310 1.18230 0.82485 0.87557 0.78547 1.90844 1.51948 1.56444 1.42771 1.19797 0.94315 0.93740 1.03086 1.21564 1.00475 0.91726 0.96770 1.17077 0.89088 0.87252 0.99913 1.91555 1.67963 1.69155 1.82167 1.21442 0.90970 1.02120 0.96203 1.18789 0.97527 0.92503 1.01654 1.21975 0.89922 1.02340 0.93123 1.22374 1.02986 0.93059 0.99678 1.23709 0.91894 0.96498 0.93124 1.68276 1.03876 1.38086 1.10092 1.18975 0.93428 0.90641 0.96921 1.42601 1.78197 1.10101 1.06267 1.19516 1.33909 0.93676 0.88502 0.91436 1.25412 1.03576 0.96853 1.01132 1.69803 1.53185 1.10028 1.28928 0.85277 0.76501 0.78384 0.80973 1.19234 1.22993 1.21589 0.90350 0.95229 0.93820 0.87320 0.90349 0.89831 0.91022 0.94705 0.75513 0.81523 0.79577 0.79260 0.80059 0.81140 0.79816 0.94402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.17 9.49 71.98 0.68 -4.49 16 2 C 0.16 6.15 2.84 44.99 0.13 6.28 16 3 H 0.04 1.56 7.56 -2.39 -0.02 1.54 16 4 C -0.12 -3.44 4.29 30.59 0.13 -3.31 16 5 C 0.15 5.06 2.52 44.99 0.11 5.17 16 6 H 0.05 2.16 7.05 -2.39 -0.02 2.14 16 7 C -0.15 -4.23 9.48 71.98 0.68 -3.54 16 8 N -0.70 -21.94 4.40 -445.79 -1.96 -23.90 16 9 C 0.55 20.86 7.73 86.67 0.67 21.53 16 10 O -0.54 -26.57 14.84 -4.01 -0.06 -26.63 16 11 C -0.11 -3.30 5.90 -19.86 -0.12 -3.42 16 12 C -0.08 -1.89 9.49 22.59 0.21 -1.68 16 13 C 0.09 1.63 7.22 22.08 0.16 1.79 16 14 F -0.13 -2.32 17.24 44.97 0.78 -1.54 16 15 C -0.09 -1.41 9.71 22.40 0.22 -1.19 16 16 C -0.10 -2.16 5.74 -21.29 -0.12 -2.28 16 17 C -0.05 -0.67 9.89 22.52 0.22 -0.44 16 18 C -0.16 -2.44 10.03 22.14 0.22 -2.21 16 19 C 0.12 2.95 11.15 85.03 0.95 3.90 16 20 N -0.50 -17.48 8.43 -187.94 -1.58 -19.07 16 21 C 0.12 3.86 6.61 40.62 0.27 4.13 16 22 N -0.73 -37.57 4.49 -322.93 -1.45 -39.02 16 23 C -0.22 -13.00 9.93 84.03 0.83 -12.17 16 24 H 0.07 3.83 7.83 -2.91 -0.02 3.81 16 25 C -0.08 -4.74 5.50 84.86 0.47 -4.28 16 26 N -0.97 -62.76 13.06 21.65 0.28 -62.48 16 27 Si 0.96 49.54 29.55 68.60 2.03 51.57 16 28 H -0.27 -13.02 7.11 99.48 0.71 -12.31 16 29 H -0.30 -15.97 7.11 99.48 0.71 -15.26 16 30 H -0.29 -14.62 7.11 99.48 0.71 -13.91 16 31 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.11 2.21 8.14 -2.39 -0.02 2.19 16 35 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 36 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 38 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.41 9.35 6.62 -92.71 -0.61 8.73 16 40 H 0.17 2.80 6.36 -2.91 -0.02 2.78 16 41 H 0.19 1.39 8.06 -2.91 -0.02 1.36 16 42 H 0.19 0.77 8.06 -2.91 -0.02 0.75 16 43 H 0.18 1.15 8.06 -2.91 -0.02 1.13 16 44 H 0.17 3.50 8.06 -2.91 -0.02 3.47 16 45 H 0.37 20.72 7.80 -92.71 -0.72 20.00 16 46 H 0.25 15.62 8.31 -92.71 -0.77 14.85 16 Total: -1.00 -87.94 389.77 3.44 -84.50 By element: Atomic # 1 Polarization: 33.09 SS G_CDS: -0.31 Total: 32.78 kcal Atomic # 6 Polarization: -1.94 SS G_CDS: 5.72 Total: 3.79 kcal Atomic # 7 Polarization: -139.76 SS G_CDS: -4.71 Total: -144.47 kcal Atomic # 8 Polarization: -26.57 SS G_CDS: -0.06 Total: -26.63 kcal Atomic # 9 Polarization: -2.32 SS G_CDS: 0.78 Total: -1.54 kcal Atomic # 14 Polarization: 49.54 SS G_CDS: 2.03 Total: 51.57 kcal Total: -87.94 3.44 -84.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135593575.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.471 kcal (2) G-P(sol) polarization free energy of solvation -87.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.59 seconds