Wall clock time and date at job start Wed Apr 1 2020 03:24:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 109.46596 * 2 1 4 4 C 1.53000 * 109.47173 * 239.99882 * 2 1 3 5 5 C 1.53000 * 109.46760 * 174.99657 * 4 2 1 6 6 H 1.09005 * 109.46923 * 55.00410 * 5 4 2 7 7 C 1.52997 * 109.46850 * 174.99963 * 5 4 2 8 8 N 1.46493 * 109.47486 * 295.00103 * 5 4 2 9 9 C 1.34780 * 119.99921 * 154.99962 * 8 5 4 10 10 O 1.21597 * 120.00392 * 0.02562 * 9 8 5 11 11 C 1.47453 * 119.99940 * 179.97438 * 9 8 5 12 12 C 1.38714 * 120.31227 * 0.02562 * 11 9 8 13 13 C 1.39105 * 120.69586 * 180.02562 * 12 11 9 14 14 F 1.35103 * 119.49781 * 179.97438 * 13 12 11 15 15 C 1.36529 * 120.99804 * 0.02562 * 13 12 11 16 16 C 1.40406 * 120.07591 * 359.97438 * 15 13 12 17 17 C 1.40813 * 121.23497 * 180.02562 * 16 15 13 18 18 C 1.36620 * 118.16129 * 179.97438 * 17 16 15 19 19 C 1.39237 * 119.90484 * 0.04584 * 18 17 16 20 20 N 1.31224 * 121.69795 * 359.97432 * 19 18 17 21 21 C 1.33357 * 121.36080 * 0.02562 * 20 19 18 22 22 N 1.46496 * 109.47045 * 119.99797 * 2 1 3 23 23 C 1.36941 * 119.99990 * 275.00368 * 22 2 1 24 24 H 1.07995 * 120.00271 * 359.97438 * 23 22 2 25 25 C 1.38811 * 119.99894 * 180.02562 * 23 22 2 26 26 N 1.31620 * 120.00379 * 359.97438 * 25 23 22 27 27 Si 1.86802 * 120.00101 * 180.02562 * 25 23 22 28 28 H 1.48495 * 109.47580 * 89.99697 * 27 25 23 29 29 H 1.48502 * 109.47171 * 210.00210 * 27 25 23 30 30 H 1.48502 * 109.46908 * 329.99306 * 27 25 23 31 31 H 1.08998 * 109.46596 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47101 * 299.99827 * 1 2 3 33 33 H 1.09000 * 109.46742 * 60.00398 * 1 2 3 34 34 H 1.08995 * 109.46825 * 55.00245 * 4 2 1 35 35 H 1.08998 * 109.46992 * 294.99598 * 4 2 1 36 36 H 1.09004 * 109.47327 * 300.00337 * 7 5 4 37 37 H 1.08994 * 109.47430 * 60.00342 * 7 5 4 38 38 H 1.09006 * 109.47400 * 180.02562 * 7 5 4 39 39 H 0.97002 * 120.00147 * 335.00306 * 8 5 4 40 40 H 1.07994 * 119.65422 * 0.29865 * 12 11 9 41 41 H 1.08002 * 119.96466 * 179.97438 * 15 13 12 42 42 H 1.07998 * 120.92262 * 359.95123 * 17 16 15 43 43 H 1.08001 * 120.05241 * 179.97438 * 18 17 16 44 44 H 1.08003 * 119.15373 * 179.97438 * 19 18 17 45 45 H 0.96997 * 120.00232 * 94.99984 * 22 2 1 46 46 H 0.96996 * 120.00717 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5649 -0.6132 -1.3136 6 1 3.9955 -0.9922 -0.3867 7 6 4.0853 -1.4382 -2.4923 8 7 3.9480 0.7894 -1.4924 9 6 5.1612 1.2136 -1.0866 10 8 5.9380 0.4320 -0.5725 11 6 5.5470 2.6253 -1.2670 12 6 4.6662 3.5224 -1.8531 13 6 5.0221 4.8557 -2.0277 14 9 4.1455 5.7085 -2.6019 15 6 6.2441 5.3154 -1.6286 16 6 7.1645 4.4395 -1.0311 17 6 8.4313 4.8875 -0.6098 18 6 9.2774 3.9816 -0.0355 19 6 8.8763 2.6570 0.1176 20 7 7.6948 2.2444 -0.2771 21 6 6.8225 3.0782 -0.8449 22 7 2.0184 -0.6905 1.1962 23 6 2.1491 -0.0074 2.3758 24 1 1.8926 1.0406 2.4242 25 6 2.6123 -0.6616 3.5090 26 7 2.9254 -1.9386 3.4500 27 14 2.7899 0.2701 5.1184 28 1 1.5223 0.1779 5.8863 29 1 3.8950 -0.3224 5.9140 30 1 3.0939 1.6956 4.8340 31 1 -0.3632 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 1.6055 -0.2617 -2.1369 35 1 1.7518 -1.7715 -1.2055 36 1 3.8002 -2.4819 -2.3594 37 1 3.6548 -1.0593 -3.4192 38 1 5.1717 -1.3616 -2.5380 39 1 3.3285 1.4129 -1.9028 40 1 3.6922 3.1831 -2.1733 41 1 6.5032 6.3539 -1.7726 42 1 8.7260 5.9186 -0.7375 43 1 10.2565 4.2920 0.2984 44 1 9.5550 1.9510 0.5728 45 1 2.2491 -1.6317 1.1527 46 1 3.2487 -2.3959 4.2420 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135593576.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:24:37 Heat of formation + Delta-G solvation = -34.939915 kcal Electronic energy + Delta-G solvation = -30317.941495 eV Core-core repulsion = 26121.430780 eV Total energy + Delta-G solvation = -4196.510715 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -50.01834 -42.04725 -40.55868 -38.31581 -37.74823 -36.04149 -34.59297 -34.01479 -32.49201 -31.27983 -30.77239 -30.34367 -27.60047 -26.01209 -25.65956 -24.71961 -24.48051 -22.39279 -21.60238 -21.21190 -19.82262 -19.30130 -18.94405 -18.43852 -17.45021 -17.07812 -16.82254 -16.64817 -16.44139 -16.03540 -15.95564 -15.66312 -15.54231 -15.40243 -15.05769 -14.64330 -14.55631 -14.22270 -14.13003 -13.99546 -13.61625 -13.36358 -13.35308 -13.17027 -12.93026 -12.79733 -12.69447 -12.65899 -12.46956 -12.23656 -12.22914 -11.82905 -11.61758 -11.55295 -11.42532 -11.07726 -10.91750 -10.18348 -10.00086 -9.86179 -9.36355 -8.95070 -7.92962 -5.17940 -1.03227 -0.38992 0.68288 1.38932 1.41915 1.48168 1.48590 2.11010 2.24367 2.54424 2.95821 3.02870 3.20789 3.39740 3.41375 3.57664 3.73975 3.82343 3.91529 3.97956 4.01966 4.12039 4.25213 4.32155 4.41257 4.50835 4.54449 4.59173 4.68708 4.69574 4.78980 4.81421 4.83949 4.94129 4.99415 5.04279 5.10320 5.14447 5.24088 5.34655 5.41870 5.42511 5.50345 5.63033 5.66995 5.70019 6.30464 6.61740 7.01528 7.36043 7.36888 8.16802 8.36243 9.30929 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.008811 B = 0.003830 C = 0.003358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3177.115993 B = 7308.476762 C = 8336.064027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.163 3.837 3 H 0.040 0.960 4 C -0.117 4.117 5 C 0.149 3.851 6 H 0.046 0.954 7 C -0.150 4.150 8 N -0.703 5.703 9 C 0.545 3.455 10 O -0.543 6.543 11 C -0.105 4.105 12 C -0.084 4.084 13 C 0.086 3.914 14 F -0.130 7.130 15 C -0.088 4.088 16 C -0.102 4.102 17 C -0.048 4.048 18 C -0.162 4.162 19 C 0.119 3.881 20 N -0.496 5.496 21 C 0.123 3.877 22 N -0.731 5.731 23 C -0.225 4.225 24 H 0.067 0.933 25 C -0.077 4.077 26 N -0.968 5.968 27 Si 0.959 3.041 28 H -0.282 1.282 29 H -0.299 1.299 30 H -0.277 1.277 31 H 0.043 0.957 32 H 0.028 0.972 33 H 0.078 0.922 34 H 0.108 0.892 35 H 0.078 0.922 36 H 0.071 0.929 37 H 0.083 0.917 38 H 0.034 0.966 39 H 0.407 0.593 40 H 0.167 0.833 41 H 0.187 0.813 42 H 0.190 0.810 43 H 0.182 0.818 44 H 0.172 0.828 45 H 0.370 0.630 46 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.150 17.994 -17.732 26.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.055 3.945 3 H 0.058 0.942 4 C -0.156 4.156 5 C 0.044 3.956 6 H 0.064 0.936 7 C -0.208 4.208 8 N -0.356 5.356 9 C 0.332 3.668 10 O -0.420 6.420 11 C -0.109 4.109 12 C -0.105 4.105 13 C 0.067 3.933 14 F -0.108 7.108 15 C -0.107 4.107 16 C -0.105 4.105 17 C -0.074 4.074 18 C -0.181 4.181 19 C -0.052 4.052 20 N -0.203 5.203 21 C 0.000 4.000 22 N -0.372 5.372 23 C -0.357 4.357 24 H 0.085 0.915 25 C -0.269 4.269 26 N -0.619 5.619 27 Si 0.790 3.210 28 H -0.209 1.209 29 H -0.226 1.226 30 H -0.203 1.203 31 H 0.062 0.938 32 H 0.048 0.952 33 H 0.096 0.904 34 H 0.127 0.873 35 H 0.097 0.903 36 H 0.090 0.910 37 H 0.102 0.898 38 H 0.053 0.947 39 H 0.245 0.755 40 H 0.185 0.815 41 H 0.204 0.796 42 H 0.207 0.793 43 H 0.199 0.801 44 H 0.189 0.811 45 H 0.202 0.798 46 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 8.299 16.709 -17.210 25.382 hybrid contribution -0.014 0.583 1.168 1.305 sum 8.285 17.292 -16.043 25.000 Atomic orbital electron populations 1.22300 0.97534 1.00937 1.00745 1.20529 0.92752 0.95155 0.86072 0.94191 1.22085 0.92506 1.02400 0.98560 1.20833 0.95736 0.80632 0.98374 0.93606 1.22071 1.00220 1.00306 0.98191 1.45789 1.15831 1.11700 1.62311 1.18233 0.82488 0.87558 0.78543 1.90845 1.51939 1.56453 1.42765 1.19799 0.94356 0.93745 1.03041 1.21565 1.00465 0.91724 0.96795 1.17077 0.89096 0.87252 0.99909 1.91557 1.67990 1.69179 1.82115 1.21439 0.90963 1.02121 0.96219 1.18786 0.97497 0.92527 1.01666 1.21969 0.89965 1.02334 0.93096 1.22371 1.03023 0.93104 0.99596 1.23713 0.91879 0.96467 0.93161 1.68277 1.03916 1.38079 1.10054 1.18972 0.93454 0.90662 0.96882 1.42591 1.78221 1.10097 1.06248 1.19475 1.34046 0.93686 0.88543 0.91489 1.25412 1.03517 0.96863 1.01139 1.69793 1.53073 1.10056 1.29001 0.85336 0.77010 0.77848 0.80856 1.20898 1.22609 1.20258 0.93823 0.95233 0.90351 0.87326 0.90345 0.91024 0.89829 0.94701 0.75517 0.81530 0.79575 0.79262 0.80050 0.81123 0.79814 0.94389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.18 9.49 71.98 0.68 -4.50 16 2 C 0.16 6.16 2.84 44.99 0.13 6.29 16 3 H 0.04 1.55 7.56 -2.39 -0.02 1.53 16 4 C -0.12 -3.44 4.29 30.59 0.13 -3.31 16 5 C 0.15 5.07 2.52 44.99 0.11 5.18 16 6 H 0.05 2.16 7.05 -2.38 -0.02 2.14 16 7 C -0.15 -4.23 9.48 71.98 0.68 -3.55 16 8 N -0.70 -21.97 4.40 -445.79 -1.96 -23.93 16 9 C 0.55 20.89 7.73 86.67 0.67 21.56 16 10 O -0.54 -26.57 14.85 -4.02 -0.06 -26.63 16 11 C -0.11 -3.31 5.90 -19.86 -0.12 -3.43 16 12 C -0.08 -1.90 9.49 22.59 0.21 -1.69 16 13 C 0.09 1.63 7.22 22.08 0.16 1.79 16 14 F -0.13 -2.32 17.24 44.97 0.78 -1.55 16 15 C -0.09 -1.41 9.71 22.40 0.22 -1.20 16 16 C -0.10 -2.16 5.74 -21.29 -0.12 -2.28 16 17 C -0.05 -0.67 9.89 22.52 0.22 -0.45 16 18 C -0.16 -2.44 10.03 22.13 0.22 -2.22 16 19 C 0.12 2.95 11.15 85.02 0.95 3.90 16 20 N -0.50 -17.49 8.43 -187.95 -1.58 -19.08 16 21 C 0.12 3.87 6.61 40.61 0.27 4.14 16 22 N -0.73 -37.60 4.49 -322.94 -1.45 -39.05 16 23 C -0.23 -13.10 9.93 84.03 0.83 -12.27 16 24 H 0.07 3.80 7.83 -2.91 -0.02 3.78 16 25 C -0.08 -4.72 5.50 84.86 0.47 -4.25 16 26 N -0.97 -62.73 13.06 21.65 0.28 -62.45 16 27 Si 0.96 49.55 29.55 68.60 2.03 51.58 16 28 H -0.28 -14.00 7.11 99.48 0.71 -13.29 16 29 H -0.30 -15.69 7.11 99.48 0.71 -14.98 16 30 H -0.28 -13.80 7.11 99.48 0.71 -13.09 16 31 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 34 H 0.11 2.22 8.14 -2.39 -0.02 2.20 16 35 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 36 H 0.07 1.90 8.14 -2.38 -0.02 1.88 16 37 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 38 H 0.03 1.13 8.14 -2.38 -0.02 1.11 16 39 H 0.41 9.37 6.62 -92.71 -0.61 8.76 16 40 H 0.17 2.81 6.36 -2.91 -0.02 2.79 16 41 H 0.19 1.40 8.06 -2.91 -0.02 1.37 16 42 H 0.19 0.77 8.06 -2.91 -0.02 0.75 16 43 H 0.18 1.15 8.06 -2.91 -0.02 1.13 16 44 H 0.17 3.49 8.06 -2.91 -0.02 3.47 16 45 H 0.37 20.73 7.80 -92.71 -0.72 20.01 16 46 H 0.25 15.66 8.31 -92.71 -0.77 14.89 16 Total: -1.00 -87.86 389.77 3.44 -84.42 By element: Atomic # 1 Polarization: 33.29 SS G_CDS: -0.31 Total: 32.98 kcal Atomic # 6 Polarization: -2.00 SS G_CDS: 5.72 Total: 3.72 kcal Atomic # 7 Polarization: -139.80 SS G_CDS: -4.71 Total: -144.52 kcal Atomic # 8 Polarization: -26.57 SS G_CDS: -0.06 Total: -26.63 kcal Atomic # 9 Polarization: -2.32 SS G_CDS: 0.78 Total: -1.55 kcal Atomic # 14 Polarization: 49.55 SS G_CDS: 2.03 Total: 51.58 kcal Total: -87.86 3.44 -84.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135593576.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.483 kcal (2) G-P(sol) polarization free energy of solvation -87.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds