Wall clock time and date at job start Wed Apr 1 2020 03:21:37
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 H 1.09005 * 109.47033 * 2 1
4 4 C 1.52997 * 109.47264 * 239.99923 * 2 1 3
5 5 C 1.53006 * 109.46841 * 174.99605 * 4 2 1
6 6 H 1.09000 * 109.47128 * 55.00806 * 5 4 2
7 7 C 1.53005 * 109.46558 * 175.00091 * 5 4 2
8 8 N 1.46498 * 109.47329 * 295.00084 * 5 4 2
9 9 C 1.34775 * 119.99607 * 155.00046 * 8 5 4
10 10 O 1.21568 * 120.00171 * 0.02562 * 9 8 5
11 11 C 1.47761 * 119.99877 * 180.02562 * 9 8 5
12 12 C 1.40598 * 120.26813 * 359.72135 * 11 9 8
13 13 N 1.30798 * 121.54067 * 179.71591 * 12 11 9
14 14 C 1.33827 * 121.72429 * 0.55532 * 13 12 11
15 15 C 1.40537 * 120.79242 * 179.72211 * 14 13 12
16 16 C 1.36096 * 119.85091 * 180.02562 * 15 14 13
17 17 C 1.39561 * 121.06227 * 359.97205 * 16 15 14
18 18 F 1.35100 * 119.61204 * 180.02562 * 17 16 15
19 19 C 1.36350 * 120.77205 * 0.07121 * 17 16 15
20 20 C 1.40504 * 119.61089 * 359.91204 * 19 17 16
21 21 C 1.39007 * 120.26862 * 180.02562 * 11 9 8
22 22 N 1.46498 * 109.46890 * 119.99923 * 2 1 3
23 23 C 1.36935 * 120.00239 * 275.00034 * 22 2 1
24 24 H 1.08004 * 120.00069 * 0.02562 * 23 22 2
25 25 C 1.38811 * 120.00368 * 180.02562 * 23 22 2
26 26 N 1.31624 * 119.99540 * 359.72375 * 25 23 22
27 27 Si 1.86800 * 120.00451 * 180.02562 * 25 23 22
28 28 H 1.48501 * 109.46758 * 269.72270 * 27 25 23
29 29 H 1.48499 * 109.47026 * 29.72118 * 27 25 23
30 30 H 1.48496 * 109.47474 * 149.72153 * 27 25 23
31 31 H 1.08994 * 109.47214 * 299.99506 * 1 2 3
32 32 H 1.08994 * 109.47102 * 60.00064 * 1 2 3
33 33 H 1.09005 * 109.47033 * 180.02562 * 1 2 3
34 34 H 1.08996 * 109.47554 * 295.00148 * 4 2 1
35 35 H 1.09001 * 109.46960 * 55.00369 * 4 2 1
36 36 H 1.08994 * 109.47185 * 300.00100 * 7 5 4
37 37 H 1.08999 * 109.47043 * 60.01027 * 7 5 4
38 38 H 1.09001 * 109.46484 * 180.02562 * 7 5 4
39 39 H 0.97002 * 120.00037 * 335.00467 * 8 5 4
40 40 H 1.07998 * 119.23424 * 0.02562 * 12 11 9
41 41 H 1.08006 * 120.07640 * 0.04304 * 15 14 13
42 42 H 1.08002 * 119.46673 * 180.02562 * 16 15 14
43 43 H 1.08006 * 120.18785 * 179.97438 * 19 17 16
44 44 H 1.08001 * 121.01784 * 0.02562 * 21 11 9
45 45 H 0.97004 * 119.99747 * 95.00774 * 22 2 1
46 46 H 0.97000 * 120.00481 * 0.27542 * 26 25 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0400 -0.7212 -1.2492
5 6 3.5649 -0.6131 -1.3136
6 1 3.9955 -0.9922 -0.3868
7 6 4.0852 -1.4382 -2.4924
8 7 3.9479 0.7895 -1.4924
9 6 5.1611 1.2137 -1.0866
10 8 5.9377 0.4322 -0.5727
11 6 5.5473 2.6286 -1.2663
12 6 4.6558 3.5359 -1.8653
13 7 4.9697 4.7947 -2.0317
14 6 6.1574 5.2801 -1.6510
15 6 6.4763 6.6350 -1.8445
16 6 7.6901 7.1082 -1.4505
17 6 8.6310 6.2682 -0.8532
18 9 9.8267 6.7691 -0.4728
19 6 8.3580 4.9479 -0.6498
20 6 7.1141 4.4274 -1.0445
21 6 6.7974 3.0719 -0.8504
22 7 2.0183 -0.6906 1.1962
23 6 2.1490 -0.0075 2.3758
24 1 1.8918 1.0403 2.4244
25 6 2.6122 -0.6617 3.5091
26 7 2.9205 -1.9400 3.4511
27 14 2.7899 0.2699 5.1184
28 1 4.1540 0.8503 5.2062
29 1 1.7835 1.3605 5.1727
30 1 2.5735 -0.6603 6.2554
31 1 -0.3633 0.5137 0.8900
32 1 -0.3633 0.5138 -0.8899
33 1 -0.3633 -1.0277 0.0005
34 1 1.7517 -1.7715 -1.2056
35 1 1.6054 -0.2617 -2.1369
36 1 3.8002 -2.4818 -2.3594
37 1 3.6547 -1.0591 -3.4193
38 1 5.1716 -1.3615 -2.5380
39 1 3.3284 1.4130 -1.9027
40 1 3.6873 3.1864 -2.1912
41 1 5.7598 7.2994 -2.3046
42 1 7.9285 8.1506 -1.6018
43 1 9.0934 4.3063 -0.1870
44 1 7.5037 2.3955 -0.3922
45 1 2.2490 -1.6318 1.1526
46 1 2.8279 -2.4240 2.6156
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001135882587.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:21:37
Heat of formation + Delta-G solvation = -44.298788 kcal
Electronic energy + Delta-G solvation = -29601.857863 eV
Core-core repulsion = 25404.941317 eV
Total energy + Delta-G solvation = -4196.916546 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 345.159 amu
Computer time = 1.11 seconds
Orbital eigenvalues (eV)
-50.05287 -42.13888 -40.76799 -38.53021 -37.82209 -36.32692 -34.67933 -34.23303
-32.73332 -31.15761 -30.93246 -30.14653 -27.66708 -26.17613 -25.52665 -25.11599
-23.49888 -22.95808 -22.01285 -21.38428 -19.92886 -19.43269 -19.04697 -18.68795
-17.84071 -17.17345 -16.80560 -16.70544 -16.40102 -16.22780 -15.97125 -15.73927
-15.50026 -15.40473 -15.10571 -14.82795 -14.58679 -14.45313 -14.35965 -14.28556
-13.80147 -13.55278 -13.45367 -13.14581 -12.92476 -12.79993 -12.56968 -12.51929
-12.48918 -12.19442 -11.91163 -11.87343 -11.75807 -11.56922 -11.42037 -11.17767
-10.91456 -10.66883 -10.19599 -9.89579 -9.43578 -9.04322 -8.34112 -5.25498
-1.02718 -0.65857 0.61876 1.28624 1.52373 1.63156 1.76307 1.98971
2.10924 2.70361 2.85357 2.96526 3.06579 3.34625 3.44480 3.45508
3.56644 3.64924 3.71446 3.81216 3.89312 3.96130 4.06106 4.20180
4.31106 4.45168 4.47626 4.61841 4.64600 4.72834 4.73333 4.77865
4.85927 4.87001 4.94412 4.96550 4.99051 5.03651 5.17178 5.23348
5.28454 5.34674 5.52183 5.55793 5.59421 5.65190 6.46148 6.54723
6.59686 7.15468 7.17112 8.07608 8.17844 9.18458
Molecular weight = 345.16amu
Principal moments of inertia in cm(-1)
A = 0.010113 B = 0.003010 C = 0.002631
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2768.025537 B = 9301.210985 C =10640.995237
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.156 4.156
2 C 0.167 3.833
3 H 0.043 0.957
4 C -0.120 4.120
5 C 0.147 3.853
6 H 0.046 0.954
7 C -0.152 4.152
8 N -0.695 5.695
9 C 0.559 3.441
10 O -0.579 6.579
11 C -0.191 4.191
12 C 0.166 3.834
13 N -0.475 5.475
14 C 0.116 3.884
15 C -0.065 4.065
16 C -0.111 4.111
17 C 0.098 3.902
18 F -0.138 7.138
19 C -0.133 4.133
20 C -0.098 4.098
21 C 0.002 3.998
22 N -0.743 5.743
23 C -0.313 4.313
24 H 0.060 0.940
25 C -0.108 4.108
26 N -0.980 5.980
27 Si 1.119 2.881
28 H -0.295 1.295
29 H -0.272 1.272
30 H -0.292 1.292
31 H 0.026 0.974
32 H 0.080 0.920
33 H 0.041 0.959
34 H 0.078 0.922
35 H 0.112 0.888
36 H 0.071 0.929
37 H 0.085 0.915
38 H 0.038 0.962
39 H 0.412 0.588
40 H 0.192 0.808
41 H 0.173 0.827
42 H 0.178 0.822
43 H 0.155 0.845
44 H 0.149 0.851
45 H 0.356 0.644
46 H 0.244 0.756
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.203 17.522 -18.796 26.218
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.216 4.216
2 C 0.059 3.941
3 H 0.061 0.939
4 C -0.158 4.158
5 C 0.043 3.957
6 H 0.064 0.936
7 C -0.210 4.210
8 N -0.347 5.347
9 C 0.346 3.654
10 O -0.459 6.459
11 C -0.197 4.197
12 C -0.007 4.007
13 N -0.183 5.183
14 C -0.006 4.006
15 C -0.083 4.083
16 C -0.131 4.131
17 C 0.079 3.921
18 F -0.116 7.116
19 C -0.152 4.152
20 C -0.101 4.101
21 C -0.025 4.025
22 N -0.385 5.385
23 C -0.445 4.445
24 H 0.078 0.922
25 C -0.299 4.299
26 N -0.629 5.629
27 Si 0.946 3.054
28 H -0.222 1.222
29 H -0.197 1.197
30 H -0.219 1.219
31 H 0.045 0.955
32 H 0.099 0.901
33 H 0.060 0.940
34 H 0.096 0.904
35 H 0.130 0.870
36 H 0.090 0.910
37 H 0.104 0.896
38 H 0.057 0.943
39 H 0.250 0.750
40 H 0.209 0.791
41 H 0.191 0.809
42 H 0.196 0.804
43 H 0.173 0.827
44 H 0.167 0.833
45 H 0.188 0.812
46 H 0.054 0.946
Dipole moment (debyes) X Y Z Total
from point charges 5.593 17.777 -17.220 25.374
hybrid contribution 0.374 -1.060 -0.669 1.308
sum 5.967 16.717 -17.889 25.201
Atomic orbital electron populations
1.22298 0.97687 1.00824 1.00784 1.20484 0.92621 0.95239 0.85711
0.93926 1.22120 0.92607 1.02422 0.98645 1.20882 0.95706 0.80627
0.98521 0.93607 1.22093 1.00501 1.00268 0.98129 1.45736 1.15684
1.11841 1.61391 1.18279 0.82395 0.87249 0.77475 1.90791 1.52754
1.57229 1.45172 1.20953 0.97548 0.94698 1.06476 1.23393 0.98897
0.87510 0.90946 1.68016 1.17349 1.14703 1.18183 1.19449 0.89653
0.95520 0.95942 1.20986 0.96943 0.92268 0.98078 1.21307 0.92250
1.02145 0.97422 1.17533 0.82416 0.92229 0.99895 1.91535 1.43240
1.87762 1.89066 1.21127 0.96923 0.95244 1.01935 1.18555 0.95862
0.93764 1.01870 1.22046 0.95183 0.94339 0.90891 1.42617 1.79440
1.09372 1.07118 1.20266 1.39012 0.94832 0.90402 0.92231 1.26911
1.00396 0.97697 1.04932 1.70943 1.54511 1.09422 1.28002 0.82715
0.76335 0.73786 0.72566 1.22228 1.19688 1.21863 0.95481 0.90131
0.93977 0.90365 0.86965 0.91031 0.89580 0.94262 0.74953 0.79122
0.80915 0.80425 0.82707 0.83309 0.81196 0.94552
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -5.00 9.49 71.98 0.68 -4.32 16
2 C 0.17 5.96 2.84 44.99 0.13 6.09 16
3 H 0.04 1.56 7.56 -2.38 -0.02 1.54 16
4 C -0.12 -3.16 4.29 30.60 0.13 -3.03 16
5 C 0.15 4.44 2.52 45.00 0.11 4.56 16
6 H 0.05 1.96 7.05 -2.39 -0.02 1.94 16
7 C -0.15 -3.71 9.48 71.98 0.68 -3.03 16
8 N -0.69 -18.62 4.40 -445.47 -1.96 -20.59 16
9 C 0.56 18.30 7.74 86.76 0.67 18.97 16
10 O -0.58 -24.79 16.05 -3.93 -0.06 -24.86 16
11 C -0.19 -5.11 5.89 -20.00 -0.12 -5.22 16
12 C 0.17 3.52 10.68 85.42 0.91 4.44 16
13 N -0.48 -10.39 10.30 -187.66 -1.93 -12.33 16
14 C 0.12 2.43 6.61 40.28 0.27 2.70 16
15 C -0.06 -0.94 9.97 22.33 0.22 -0.71 16
16 C -0.11 -1.38 9.92 22.09 0.22 -1.16 16
17 C 0.10 1.64 7.24 22.15 0.16 1.80 16
18 F -0.14 -2.42 17.25 44.97 0.78 -1.65 16
19 C -0.13 -2.52 9.73 22.38 0.22 -2.31 16
20 C -0.10 -2.21 5.74 -21.29 -0.12 -2.33 16
21 C 0.00 0.05 9.46 23.02 0.22 0.27 16
22 N -0.74 -36.42 4.49 -322.94 -1.45 -37.87 16
23 C -0.31 -17.75 9.93 84.03 0.83 -16.91 16
24 H 0.06 3.34 7.83 -2.91 -0.02 3.31 16
25 C -0.11 -6.48 5.50 84.86 0.47 -6.02 16
26 N -0.98 -63.35 13.70 21.65 0.30 -63.05 16
27 Si 1.12 54.71 29.92 68.60 2.05 56.76 16
28 H -0.29 -14.16 7.11 99.48 0.71 -13.45 16
29 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16
30 H -0.29 -14.38 7.11 99.48 0.71 -13.67 16
31 H 0.03 0.98 8.14 -2.39 -0.02 0.97 16
32 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16
33 H 0.04 1.36 8.14 -2.38 -0.02 1.34 16
34 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16
35 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16
36 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16
37 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16
38 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16
39 H 0.41 7.68 6.63 -92.71 -0.61 7.06 16
40 H 0.19 2.68 6.37 -2.91 -0.02 2.66 16
41 H 0.17 1.65 8.06 -2.91 -0.02 1.63 16
42 H 0.18 1.03 8.06 -2.91 -0.02 1.00 16
43 H 0.16 2.56 8.06 -2.91 -0.02 2.53 16
44 H 0.15 3.97 7.70 -2.91 -0.02 3.95 16
45 H 0.36 18.64 6.63 -92.71 -0.61 18.03 16
46 H 0.24 15.67 6.77 -92.71 -0.63 15.04 16
Total: -1.00 -80.44 390.30 3.34 -77.10
By element:
Atomic # 1 Polarization: 32.76 SS G_CDS: -0.06 Total: 32.70 kcal
Atomic # 6 Polarization: -11.91 SS G_CDS: 5.69 Total: -6.22 kcal
Atomic # 7 Polarization: -128.79 SS G_CDS: -5.05 Total: -133.84 kcal
Atomic # 8 Polarization: -24.79 SS G_CDS: -0.06 Total: -24.86 kcal
Atomic # 9 Polarization: -2.42 SS G_CDS: 0.78 Total: -1.65 kcal
Atomic # 14 Polarization: 54.71 SS G_CDS: 2.05 Total: 56.76 kcal
Total: -80.44 3.34 -77.10 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001135882587.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 32.800 kcal
(2) G-P(sol) polarization free energy of solvation -80.443 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.642 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.344 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.099 kcal
(6) G-S(sol) free energy of system = (1) + (5) -44.299 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.11 seconds