Wall clock time and date at job start Wed Apr 1 2020 03:22:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08995 * 109.47468 * 2 1 4 4 C 1.52996 * 109.47168 * 239.99041 * 2 1 3 5 5 C 1.52997 * 109.47127 * 175.00180 * 4 2 1 6 6 H 1.09006 * 109.47069 * 305.00596 * 5 4 2 7 7 C 1.52999 * 109.47377 * 185.00713 * 5 4 2 8 8 N 1.46498 * 109.47058 * 65.00376 * 5 4 2 9 9 C 1.34781 * 119.99908 * 205.00507 * 8 5 4 10 10 O 1.21545 * 120.00065 * 359.97438 * 9 8 5 11 11 C 1.47889 * 119.99891 * 180.02562 * 9 8 5 12 12 C 1.38805 * 119.32643 * 180.02562 * 11 9 8 13 13 C 1.39859 * 118.37192 * 179.97438 * 12 11 9 14 14 C 1.41398 * 122.94788 * 179.97438 * 13 12 11 15 15 O 1.35217 * 120.99814 * 0.02562 * 14 13 12 16 16 N 1.32499 * 118.00645 * 179.77946 * 14 13 12 17 17 C 1.32354 * 121.48904 * 0.50594 * 16 14 13 18 18 N 1.31303 * 123.09495 * 359.46805 * 17 16 14 19 19 C 1.33698 * 120.36904 * 0.25792 * 18 17 16 20 20 C 1.40614 * 122.62330 * 179.97438 * 19 18 17 21 21 N 1.30907 * 120.15669 * 180.02562 * 20 19 18 22 22 N 1.46504 * 109.46740 * 119.99334 * 2 1 3 23 23 C 1.36935 * 120.00214 * 275.00343 * 22 2 1 24 24 H 1.08003 * 119.99963 * 359.97438 * 23 22 2 25 25 C 1.38811 * 119.99960 * 180.02562 * 23 22 2 26 26 N 1.31624 * 120.00015 * 359.97438 * 25 23 22 27 27 Si 1.86803 * 119.99835 * 179.97438 * 25 23 22 28 28 H 1.48503 * 109.47140 * 89.99914 * 27 25 23 29 29 H 1.48508 * 109.46895 * 209.99498 * 27 25 23 30 30 H 1.48491 * 109.47020 * 329.99368 * 27 25 23 31 31 H 1.08998 * 109.47270 * 300.00498 * 1 2 3 32 32 H 1.08995 * 109.46493 * 60.00463 * 1 2 3 33 33 H 1.08999 * 109.47192 * 180.02562 * 1 2 3 34 34 H 1.09003 * 109.46506 * 55.00531 * 4 2 1 35 35 H 1.08995 * 109.47749 * 295.00470 * 4 2 1 36 36 H 1.08993 * 109.47118 * 59.99717 * 7 5 4 37 37 H 1.09000 * 109.47200 * 180.02562 * 7 5 4 38 38 H 1.09001 * 109.46499 * 300.00107 * 7 5 4 39 39 H 0.96994 * 119.99920 * 24.99507 * 8 5 4 40 40 H 1.07996 * 120.81331 * 359.95538 * 12 11 9 41 41 H 0.96704 * 113.99887 * 89.99320 * 15 14 13 42 42 H 1.08002 * 118.45561 * 179.75566 * 17 16 14 43 43 H 1.08001 * 119.91895 * 0.05603 * 20 19 18 44 44 H 0.97001 * 119.99597 * 94.99766 * 22 2 1 45 45 H 0.97001 * 119.99550 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0401 -0.7214 -1.2491 5 6 3.5649 -0.6135 -1.3135 6 1 3.8571 0.4356 -1.2677 7 6 4.0646 -1.2253 -2.6238 8 7 4.1537 -1.3343 -0.1822 9 6 5.3747 -0.9911 0.2736 10 8 5.9876 -0.0839 -0.2543 11 6 5.9694 -1.7191 1.4154 12 6 7.2275 -1.3537 1.8737 13 6 7.7706 -2.0552 2.9549 14 6 9.0430 -1.7648 3.4990 15 8 9.8091 -0.7744 2.9886 16 7 9.4600 -2.4891 4.5272 17 6 8.7204 -3.4641 5.0313 18 7 7.5329 -3.7769 4.5665 19 6 7.0133 -3.1061 3.5333 20 6 5.7472 -3.4012 2.9974 21 7 5.2853 -2.7132 1.9840 22 7 2.0183 -0.6905 1.1963 23 6 2.1490 -0.0073 2.3758 24 1 1.8925 1.0407 2.4241 25 6 2.6121 -0.6615 3.5092 26 7 2.9252 -1.9386 3.4502 27 14 2.7911 0.2707 5.1181 28 1 1.5236 0.1797 5.8865 29 1 3.8960 -0.3225 5.9136 30 1 3.0960 1.6958 4.8331 31 1 -0.3634 0.5139 0.8899 32 1 -0.3632 0.5138 -0.8900 33 1 -0.3633 -1.0276 0.0005 34 1 1.6055 -0.2619 -2.1369 35 1 1.7517 -1.7716 -1.2054 36 1 3.6265 -0.6890 -3.4655 37 1 5.1510 -1.1488 -2.6695 38 1 3.7723 -2.2744 -2.6696 39 1 3.6647 -2.0584 0.2389 40 1 7.7739 -0.5476 1.4067 41 1 9.6615 0.0885 3.3995 42 1 9.1100 -4.0260 5.8673 43 1 5.1543 -4.1972 3.4233 44 1 2.2489 -1.6317 1.1528 45 1 3.2485 -2.3957 4.2423 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001136049150.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:22:35 Heat of formation + Delta-G solvation = 2.464261 kcal Electronic energy + Delta-G solvation = -31327.771693 eV Core-core repulsion = 27152.802907 eV Total energy + Delta-G solvation = -4174.968787 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 5.66 seconds Orbital eigenvalues (eV) -42.81060 -41.00874 -39.53767 -38.81359 -38.19021 -35.77065 -34.49776 -34.08467 -33.54208 -32.34730 -31.24375 -30.11937 -27.58352 -26.70377 -26.43084 -25.48997 -23.95234 -23.29416 -21.65337 -21.52672 -20.63090 -19.64731 -19.57960 -19.02600 -18.26493 -17.30299 -16.94482 -16.86670 -16.54681 -16.10867 -15.79043 -15.63544 -15.52995 -15.40086 -15.28987 -15.01282 -14.55867 -14.32218 -14.18966 -13.83107 -13.55203 -13.35203 -13.28890 -13.17361 -12.90431 -12.78315 -12.62030 -12.27291 -12.15502 -12.05855 -12.00499 -11.70290 -11.54958 -11.38564 -11.32068 -11.21987 -10.94533 -10.81684 -10.26412 -9.90797 -9.52677 -8.72429 -7.72273 -4.95346 -1.24027 -0.70415 0.39741 1.38242 1.43521 1.44383 1.45665 2.01641 2.17259 2.39028 2.60012 2.82180 2.96714 2.97502 3.23603 3.33675 3.54685 3.56165 3.83568 3.93889 4.04040 4.09516 4.20778 4.33434 4.40736 4.47551 4.59840 4.61331 4.72623 4.86642 4.90375 4.94988 5.01270 5.10482 5.15766 5.17866 5.19438 5.38933 5.45167 5.63770 5.65697 5.66613 5.76512 6.28457 6.44215 6.56006 6.77220 6.90227 7.32457 7.54236 8.27606 8.55193 9.43682 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.010860 B = 0.004621 C = 0.003691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2577.537350 B = 6058.251400 C = 7584.737498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.162 3.838 3 H 0.028 0.972 4 C -0.120 4.120 5 C 0.142 3.858 6 H 0.062 0.938 7 C -0.152 4.152 8 N -0.669 5.669 9 C 0.574 3.426 10 O -0.582 6.582 11 C 0.047 3.953 12 C -0.061 4.061 13 C -0.174 4.174 14 C 0.424 3.576 15 O -0.466 6.466 16 N -0.545 5.545 17 C 0.324 3.676 18 N -0.508 5.508 19 C 0.120 3.880 20 C 0.161 3.839 21 N -0.384 5.384 22 N -0.718 5.718 23 C -0.234 4.234 24 H 0.049 0.951 25 C -0.040 4.040 26 N -0.905 5.905 27 Si 0.925 3.075 28 H -0.295 1.295 29 H -0.305 1.305 30 H -0.291 1.291 31 H 0.027 0.973 32 H 0.068 0.932 33 H 0.047 0.953 34 H 0.111 0.889 35 H 0.074 0.926 36 H 0.089 0.911 37 H 0.040 0.960 38 H 0.066 0.934 39 H 0.413 0.587 40 H 0.163 0.837 41 H 0.436 0.564 42 H 0.245 0.755 43 H 0.186 0.814 44 H 0.377 0.623 45 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.649 -2.973 -5.419 9.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.053 3.947 3 H 0.046 0.954 4 C -0.158 4.158 5 C 0.038 3.962 6 H 0.080 0.920 7 C -0.210 4.210 8 N -0.318 5.318 9 C 0.359 3.641 10 O -0.464 6.464 11 C -0.080 4.080 12 C -0.085 4.085 13 C -0.185 4.185 14 C 0.222 3.778 15 O -0.278 6.278 16 N -0.272 5.272 17 C 0.036 3.964 18 N -0.224 5.224 19 C -0.011 4.011 20 C -0.014 4.014 21 N -0.094 5.094 22 N -0.361 5.361 23 C -0.367 4.367 24 H 0.067 0.933 25 C -0.236 4.236 26 N -0.553 5.553 27 Si 0.758 3.242 28 H -0.223 1.223 29 H -0.233 1.233 30 H -0.218 1.218 31 H 0.046 0.954 32 H 0.087 0.913 33 H 0.066 0.934 34 H 0.129 0.871 35 H 0.093 0.907 36 H 0.108 0.892 37 H 0.060 0.940 38 H 0.085 0.915 39 H 0.252 0.748 40 H 0.181 0.819 41 H 0.302 0.698 42 H 0.261 0.739 43 H 0.203 0.797 44 H 0.212 0.788 45 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 7.672 -3.249 -5.771 10.135 hybrid contribution 0.213 1.267 1.712 2.141 sum 7.885 -1.982 -4.059 9.087 Atomic orbital electron populations 1.22272 0.97834 1.00916 1.00287 1.20482 0.92669 0.94867 0.86663 0.95361 1.22132 0.92717 1.02108 0.98856 1.21065 0.93545 0.96124 0.85462 0.91998 1.22110 1.00740 1.01848 0.96291 1.45919 1.16417 1.36651 1.32857 1.17759 0.82282 0.82274 0.81744 1.90677 1.63313 1.32011 1.60443 1.21176 0.92576 0.96367 0.97852 1.22030 0.94806 0.98286 0.93352 1.19770 0.96926 1.01020 1.00784 1.19575 0.83739 0.88664 0.85809 1.84540 1.61865 1.20623 1.60802 1.68147 1.37499 1.09795 1.11724 1.25700 0.85000 0.89027 0.96645 1.68742 1.14513 1.28083 1.11098 1.20305 0.96482 0.91553 0.92728 1.23104 0.89705 0.97623 0.90951 1.67443 1.30605 1.03108 1.08294 1.42489 1.78081 1.10086 1.05480 1.19110 1.35759 0.93141 0.88710 0.93289 1.24910 1.03616 0.96767 0.98305 1.69743 1.50543 1.07604 1.27402 0.85908 0.76402 0.78084 0.83775 1.22289 1.23252 1.21782 0.95391 0.91306 0.93431 0.87117 0.90702 0.89233 0.94046 0.91501 0.74810 0.81936 0.69814 0.73926 0.79711 0.78779 0.94641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.92 9.49 71.98 0.68 -4.23 16 2 C 0.16 5.76 2.89 44.99 0.13 5.89 16 3 H 0.03 1.11 8.08 -2.39 -0.02 1.09 16 4 C -0.12 -3.24 4.43 30.59 0.14 -3.11 16 5 C 0.14 4.35 2.57 44.99 0.12 4.46 16 6 H 0.06 2.18 7.58 -2.38 -0.02 2.16 16 7 C -0.15 -3.68 9.48 71.98 0.68 -3.00 16 8 N -0.67 -24.27 3.79 -445.36 -1.69 -25.95 16 9 C 0.57 23.13 7.76 86.80 0.67 23.81 16 10 O -0.58 -25.18 15.95 -3.86 -0.06 -25.24 16 11 C 0.05 1.81 6.74 41.60 0.28 2.09 16 12 C -0.06 -2.09 9.23 22.80 0.21 -1.88 16 13 C -0.17 -5.51 5.76 -21.21 -0.12 -5.64 16 14 C 0.42 11.36 7.91 85.37 0.68 12.04 16 15 O -0.47 -9.90 13.04 -84.98 -1.11 -11.01 16 16 N -0.55 -13.89 10.42 -311.93 -3.25 -17.14 16 17 C 0.32 7.61 12.21 180.86 2.21 9.82 16 18 N -0.51 -14.77 10.46 -193.58 -2.02 -16.80 16 19 C 0.12 3.96 6.64 40.33 0.27 4.22 16 20 C 0.16 5.70 11.11 85.41 0.95 6.65 16 21 N -0.38 -14.82 8.40 -183.88 -1.54 -16.37 16 22 N -0.72 -31.87 3.84 -322.93 -1.24 -33.11 16 23 C -0.23 -12.18 9.93 84.03 0.83 -11.34 16 24 H 0.05 2.64 7.83 -2.91 -0.02 2.62 16 25 C -0.04 -2.10 5.50 84.86 0.47 -1.64 16 26 N -0.90 -46.85 11.87 21.65 0.26 -46.60 16 27 Si 0.92 45.23 29.55 68.60 2.03 47.26 16 28 H -0.29 -14.48 7.11 99.48 0.71 -13.77 16 29 H -0.31 -15.25 7.11 99.48 0.71 -14.54 16 30 H -0.29 -14.34 7.11 99.48 0.71 -13.63 16 31 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.11 2.25 8.14 -2.39 -0.02 2.23 16 35 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.41 15.64 5.81 -92.71 -0.54 15.10 16 40 H 0.16 5.14 7.38 -2.91 -0.02 5.12 16 41 H 0.44 4.93 9.06 -74.05 -0.67 4.26 16 42 H 0.25 3.34 8.06 -2.91 -0.02 3.32 16 43 H 0.19 6.05 8.06 -2.91 -0.02 6.03 16 44 H 0.38 17.27 5.70 -92.71 -0.53 16.74 16 45 H 0.24 12.70 8.31 -92.71 -0.77 11.93 16 Total: -1.00 -66.70 381.30 -1.12 -67.82 By element: Atomic # 1 Polarization: 39.67 SS G_CDS: -0.67 Total: 39.00 kcal Atomic # 6 Polarization: 29.94 SS G_CDS: 8.19 Total: 38.14 kcal Atomic # 7 Polarization: -146.47 SS G_CDS: -9.49 Total: -155.96 kcal Atomic # 8 Polarization: -35.08 SS G_CDS: -1.17 Total: -36.25 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.26 kcal Total: -66.70 -1.12 -67.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001136049150.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.281 kcal (2) G-P(sol) polarization free energy of solvation -66.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.817 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.66 seconds