Wall clock time and date at job start Wed Apr 1 2020 02:52:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 110.91706 * 2 1 4 4 C 1.54911 * 111.00426 * 236.09169 * 2 1 3 5 5 N 1.47426 * 104.83179 * 204.91907 * 4 2 1 6 6 C 1.34774 * 125.64622 * 204.09345 * 5 4 2 7 7 O 1.21682 * 119.99920 * 174.48281 * 6 5 4 8 8 C 1.46795 * 120.00073 * 354.48474 * 6 5 4 9 9 C 1.36404 * 125.85037 * 173.14898 * 8 6 5 10 10 C 1.41271 * 107.03610 * 179.97438 * 9 8 6 11 11 C 1.43200 * 126.45456 * 179.97438 * 10 9 8 12 12 N 8.84813 * 118.08057 * 254.96829 * 2 1 3 13 13 C 1.38179 * 107.09058 * 359.97438 * 10 9 8 14 14 N 1.34426 * 108.38367 * 359.76984 * 13 10 9 15 15 H 0.97000 * 125.40650 * 180.24929 * 14 13 10 16 16 C 1.47017 * 108.70310 * 24.12750 * 5 4 2 17 17 C 1.54323 * 107.27335 * 358.94140 * 16 5 4 18 18 H 1.09000 * 110.71972 * 96.34463 * 17 16 5 19 19 N 1.46905 * 110.72225 * 219.44005 * 17 16 5 20 20 C 1.46894 * 111.00286 * 273.54542 * 19 17 16 21 21 C 1.50694 * 109.47232 * 179.97438 * 20 19 17 22 22 O 1.21290 * 120.00021 * 359.97438 * 21 20 19 23 23 N 1.34782 * 120.00017 * 179.72764 * 21 20 19 24 24 C 1.37101 * 119.99660 * 179.97438 * 23 21 20 25 25 H 1.07996 * 120.00429 * 0.02562 * 24 23 21 26 26 C 1.38948 * 119.99317 * 179.97438 * 24 23 21 27 27 N 1.31411 * 120.00654 * 359.97438 * 26 24 23 28 28 Si 1.86803 * 119.99773 * 180.02562 * 26 24 23 29 29 H 1.48499 * 109.47140 * 359.97438 * 28 26 24 30 30 H 1.48498 * 109.47290 * 119.99854 * 28 26 24 31 31 H 1.48502 * 109.46832 * 240.00107 * 28 26 24 32 32 H 1.09005 * 109.47534 * 296.10657 * 1 2 3 33 33 H 1.09003 * 109.47254 * 56.09970 * 1 2 3 34 34 H 1.08995 * 109.47558 * 176.10020 * 1 2 3 35 35 H 1.09000 * 110.36191 * 86.08035 * 4 2 1 36 36 H 1.09000 * 110.45940 * 323.80824 * 4 2 1 37 37 H 1.08009 * 126.47995 * 359.92527 * 9 8 6 38 38 H 1.07997 * 125.80494 * 180.02562 * 13 10 9 39 39 H 1.08997 * 109.88431 * 239.52272 * 16 5 4 40 40 H 1.08996 * 109.88401 * 118.35807 * 16 5 4 41 41 H 1.00906 * 110.99712 * 149.58982 * 19 17 16 42 42 H 1.09003 * 109.46782 * 59.99657 * 20 19 17 43 43 H 1.08996 * 109.47374 * 300.00542 * 20 19 17 44 44 H 0.96995 * 120.00163 * 0.02562 * 23 21 20 45 45 H 0.97002 * 120.00218 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0182 0.0000 4 6 2.0852 -0.8068 -1.2002 5 7 3.4271 -1.2432 -0.7732 6 6 4.4476 -1.5618 -1.5938 7 8 5.5445 -1.8135 -1.1312 8 6 4.2358 -1.6052 -3.0458 9 6 5.2046 -1.7823 -3.9895 10 6 4.5649 -1.7591 -5.2488 11 6 5.1951 -1.9069 -6.5262 12 7 5.6949 -2.0247 -7.5395 13 6 3.2165 -1.5671 -5.0158 14 7 3.0237 -1.4806 -3.6883 15 1 2.1674 -1.3490 -3.2521 16 6 3.4673 -1.2741 0.6961 17 6 2.0861 -0.8078 1.2023 18 1 1.4478 -1.6631 1.4240 19 7 2.2289 0.0521 2.3848 20 6 2.2894 -0.7494 3.6144 21 6 2.4363 0.1649 4.8032 22 8 2.4862 1.3660 4.6420 23 7 2.5072 -0.3518 6.0460 24 6 2.6414 0.4801 7.1276 25 1 2.6898 1.5493 6.9837 26 6 2.7139 -0.0526 8.4088 27 7 2.6535 -1.3536 8.5840 28 14 2.8960 1.0807 9.8826 29 1 2.9392 2.4912 9.4200 30 1 1.7404 0.8941 10.7963 31 1 4.1538 0.7578 10.6029 32 1 -0.3634 0.4522 0.9228 33 1 -0.3634 0.5732 -0.8530 34 1 -0.3634 -1.0252 -0.0699 35 1 2.1560 -0.1721 -2.0836 36 1 1.4524 -1.6705 -1.4042 37 1 6.2612 -1.9143 -3.8082 38 1 2.4477 -1.5021 -5.7716 39 1 4.2425 -0.5997 1.0600 40 1 3.6649 -2.2893 1.0403 41 1 1.4828 0.7299 2.4312 42 1 3.1448 -1.4234 3.5669 43 1 1.3734 -1.3315 3.7141 44 1 2.4641 -1.3121 6.1752 45 1 2.7046 -1.7254 9.4785 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001214407354.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:52:11 Heat of formation + Delta-G solvation = 19.537884 kcal Electronic energy + Delta-G solvation = -28696.312217 eV Core-core repulsion = 24522.083798 eV Total energy + Delta-G solvation = -4174.228419 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.19187 -40.16308 -38.52825 -37.90962 -36.73116 -34.98576 -33.89430 -32.80332 -32.11002 -31.26132 -30.53339 -28.92683 -27.03690 -26.50454 -24.41915 -23.40755 -23.21121 -21.64531 -20.88728 -20.47239 -19.31264 -18.72839 -17.91852 -17.30392 -16.91471 -16.38093 -15.95047 -15.83146 -15.30734 -15.10827 -14.71566 -14.69996 -14.39505 -14.34426 -13.84120 -13.81468 -13.76889 -13.55679 -13.42091 -13.32886 -13.14726 -13.09978 -12.76240 -12.36300 -12.32381 -12.26975 -11.72559 -11.63450 -11.47905 -11.35261 -11.08625 -10.88159 -10.45935 -10.37122 -10.26201 -9.66731 -9.56180 -9.13446 -8.84698 -8.57898 -8.24480 -8.00913 -6.45746 -3.86754 0.90127 1.31470 2.22480 2.45962 2.51550 2.86936 3.13791 3.24962 3.28337 3.31869 3.69492 3.84036 3.88233 3.94083 4.00929 4.19535 4.31459 4.36787 4.49426 4.66349 4.69885 4.84154 4.92082 5.00730 5.05760 5.11576 5.20417 5.32797 5.38245 5.39095 5.54203 5.66657 5.70201 5.74312 5.81559 5.87259 5.91960 5.94315 6.12551 6.20470 6.56409 7.02684 7.05938 7.28577 7.46460 7.51772 7.74389 8.01825 8.56096 9.13687 9.49338 10.00071 10.71855 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.026359 B = 0.001744 C = 0.001676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.017956 B =16053.715513 C =16698.275269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.103 4.103 3 H 0.102 0.898 4 C 0.090 3.910 5 N -0.616 5.616 6 C 0.602 3.398 7 O -0.516 6.516 8 C -0.041 4.041 9 C -0.056 4.056 10 C -0.133 4.133 11 C 0.290 3.710 12 N -0.434 5.434 13 C 0.091 3.909 14 N -0.528 5.528 15 H 0.426 0.574 16 C 0.114 3.886 17 C 0.079 3.921 18 H 0.063 0.937 19 N -0.656 5.656 20 C 0.049 3.951 21 C 0.440 3.560 22 O -0.583 6.583 23 N -0.562 5.562 24 C -0.300 4.300 25 H 0.104 0.896 26 C 0.023 3.977 27 N -0.900 5.900 28 Si 0.929 3.071 29 H -0.268 1.268 30 H -0.282 1.282 31 H -0.281 1.281 32 H 0.067 0.933 33 H 0.062 0.938 34 H 0.059 0.941 35 H 0.076 0.924 36 H 0.074 0.926 37 H 0.162 0.838 38 H 0.189 0.811 39 H 0.091 0.909 40 H 0.071 0.929 41 H 0.355 0.645 42 H 0.087 0.913 43 H 0.046 0.954 44 H 0.392 0.608 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.401 -3.607 -24.328 25.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.123 4.123 3 H 0.121 0.879 4 C -0.034 4.034 5 N -0.351 5.351 6 C 0.390 3.610 7 O -0.391 6.391 8 C -0.152 4.152 9 C -0.083 4.083 10 C -0.143 4.143 11 C -0.025 4.025 12 N -0.111 5.111 13 C -0.053 4.053 14 N -0.127 5.127 15 H 0.270 0.730 16 C -0.008 4.008 17 C -0.032 4.032 18 H 0.081 0.919 19 N -0.289 5.289 20 C -0.084 4.084 21 C 0.225 3.775 22 O -0.468 6.468 23 N -0.199 5.199 24 C -0.430 4.430 25 H 0.122 0.878 26 C -0.179 4.179 27 N -0.542 5.542 28 Si 0.757 3.243 29 H -0.192 1.192 30 H -0.208 1.208 31 H -0.207 1.207 32 H 0.086 0.914 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.094 0.906 36 H 0.092 0.908 37 H 0.179 0.821 38 H 0.206 0.794 39 H 0.109 0.891 40 H 0.089 0.911 41 H 0.177 0.823 42 H 0.106 0.894 43 H 0.064 0.936 44 H 0.225 0.775 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -5.360 -3.170 -25.470 26.221 hybrid contribution -1.505 -0.362 1.559 2.197 sum -6.865 -3.532 -23.911 25.127 Atomic orbital electron populations 1.21776 0.93210 1.02348 1.03068 1.22518 0.96318 1.00530 0.92889 0.87944 1.22623 0.84019 0.98182 0.98574 1.48276 1.11769 1.67215 1.07810 1.16619 0.83422 0.77523 0.83403 1.90909 1.23040 1.49526 1.75657 1.20024 0.85318 1.17407 0.92475 1.21077 0.99593 0.99024 0.88630 1.15393 0.92386 1.19188 0.87363 1.24631 0.93404 0.92730 0.91741 1.81290 1.07915 1.10773 1.11098 1.22321 0.96655 1.01111 0.85208 1.42470 1.09785 1.53887 1.06526 0.72972 1.22101 0.98930 1.02170 0.77615 1.22589 0.94524 0.95248 0.90831 0.91920 1.59998 1.53237 1.15875 0.99837 1.21759 1.01219 0.95589 0.89802 1.19739 0.84812 0.89042 0.83905 1.90530 1.55704 1.15272 1.85252 1.41867 1.63609 1.09746 1.04631 1.19757 1.46987 0.92266 0.83958 0.87821 1.25267 0.97251 0.96296 0.99066 1.69616 1.50341 1.10577 1.23640 0.85800 0.77780 0.80174 0.80590 1.19198 1.20769 1.20704 0.91370 0.91866 0.92190 0.90569 0.90771 0.82080 0.79441 0.89115 0.91112 0.82339 0.89445 0.93600 0.77452 0.91878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.73 9.31 37.16 0.35 -0.38 16 2 C -0.10 -0.69 3.07 -88.47 -0.27 -0.97 16 3 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 4 C 0.09 0.46 4.70 -2.53 -0.01 0.45 16 5 N -0.62 -5.63 3.33 -172.02 -0.57 -6.20 16 6 C 0.60 6.55 7.81 -12.80 -0.10 6.45 16 7 O -0.52 -7.79 17.20 5.20 0.09 -7.70 16 8 C -0.04 -0.32 6.76 -82.41 -0.56 -0.88 16 9 C -0.06 -0.45 10.54 -39.09 -0.41 -0.86 16 10 C -0.13 -0.87 5.97 -106.84 -0.64 -1.50 16 11 C 0.29 2.53 15.83 -22.47 -0.36 2.17 16 12 N -0.43 -4.90 18.54 41.84 0.78 -4.12 16 13 C 0.09 0.31 11.90 -16.44 -0.20 0.11 16 14 N -0.53 -2.03 5.28 -9.28 -0.05 -2.08 16 15 H 0.43 0.59 5.29 -40.82 -0.22 0.38 16 16 C 0.11 1.26 6.56 -3.07 -0.02 1.24 16 17 C 0.08 0.76 2.71 -65.88 -0.18 0.58 16 18 H 0.06 0.55 7.80 -51.93 -0.40 0.14 16 19 N -0.66 -9.01 5.92 -106.06 -0.63 -9.64 16 20 C 0.05 0.78 6.02 -4.98 -0.03 0.75 16 21 C 0.44 9.85 7.82 -10.99 -0.09 9.76 16 22 O -0.58 -15.17 15.78 5.55 0.09 -15.08 16 23 N -0.56 -13.76 5.29 -10.97 -0.06 -13.82 16 24 C -0.30 -8.19 9.68 -14.93 -0.14 -8.33 16 25 H 0.10 2.98 7.16 -52.49 -0.38 2.60 16 26 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 27 N -0.90 -24.03 13.05 55.50 0.72 -23.31 16 28 Si 0.93 20.68 29.55 -169.99 -5.02 15.66 16 29 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 30 H -0.28 -6.16 7.11 56.52 0.40 -5.75 16 31 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 32 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 34 H 0.06 0.25 8.07 -51.93 -0.42 -0.17 16 35 H 0.08 0.25 6.23 -51.93 -0.32 -0.08 16 36 H 0.07 0.21 7.66 -51.93 -0.40 -0.18 16 37 H 0.16 1.30 8.06 -52.48 -0.42 0.88 16 38 H 0.19 -0.08 8.06 -52.49 -0.42 -0.50 16 39 H 0.09 1.26 8.03 -51.93 -0.42 0.84 16 40 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 41 H 0.36 4.96 8.20 -39.29 -0.32 4.63 16 42 H 0.09 1.31 8.13 -51.93 -0.42 0.89 16 43 H 0.05 0.64 8.08 -51.93 -0.42 0.22 16 44 H 0.39 9.17 7.90 -40.82 -0.32 8.85 16 45 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 LS Contribution 388.96 15.07 5.86 5.86 Total: -1.00 -35.60 388.96 -7.25 -42.85 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: -5.71 Total: 8.47 kcal Atomic # 6 Polarization: 11.85 SS G_CDS: -2.75 Total: 9.10 kcal Atomic # 7 Polarization: -59.36 SS G_CDS: 0.19 Total: -59.17 kcal Atomic # 8 Polarization: -22.95 SS G_CDS: 0.18 Total: -22.78 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -35.60 -7.25 -42.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001214407354.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.388 kcal (2) G-P(sol) polarization free energy of solvation -35.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.850 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds