Wall clock time and date at job start Wed Apr 1 2020 02:52:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 110.91706 * 2 1 4 4 C 1.54911 * 111.00426 * 236.09169 * 2 1 3 5 5 N 1.47426 * 104.83179 * 204.91907 * 4 2 1 6 6 C 1.34774 * 125.64622 * 204.09345 * 5 4 2 7 7 O 1.21682 * 119.99920 * 174.48281 * 6 5 4 8 8 C 1.46795 * 120.00073 * 354.48474 * 6 5 4 9 9 C 1.36404 * 125.85037 * 173.14898 * 8 6 5 10 10 C 1.41271 * 107.03610 * 179.97438 * 9 8 6 11 11 C 1.43200 * 126.45456 * 179.97438 * 10 9 8 12 12 N 8.84813 * 118.08057 * 254.96829 * 2 1 3 13 13 C 1.38179 * 107.09058 * 359.97438 * 10 9 8 14 14 N 1.34426 * 108.38367 * 359.76984 * 13 10 9 15 15 H 0.97000 * 125.40650 * 180.24929 * 14 13 10 16 16 C 1.47017 * 108.70310 * 24.12750 * 5 4 2 17 17 C 1.54323 * 107.27335 * 358.94140 * 16 5 4 18 18 H 1.09000 * 110.71972 * 96.34463 * 17 16 5 19 19 N 1.46905 * 110.72225 * 219.44005 * 17 16 5 20 20 C 1.46894 * 111.00286 * 273.54542 * 19 17 16 21 21 C 1.50694 * 109.47232 * 179.97438 * 20 19 17 22 22 O 1.21290 * 120.00021 * 359.97438 * 21 20 19 23 23 N 1.34782 * 120.00017 * 179.72764 * 21 20 19 24 24 C 1.37101 * 119.99660 * 179.97438 * 23 21 20 25 25 H 1.07996 * 120.00429 * 0.02562 * 24 23 21 26 26 C 1.38948 * 119.99317 * 179.97438 * 24 23 21 27 27 N 1.31411 * 120.00654 * 359.97438 * 26 24 23 28 28 Si 1.86803 * 119.99773 * 180.02562 * 26 24 23 29 29 H 1.48499 * 109.47140 * 359.97438 * 28 26 24 30 30 H 1.48498 * 109.47290 * 119.99854 * 28 26 24 31 31 H 1.48502 * 109.46832 * 240.00107 * 28 26 24 32 32 H 1.09005 * 109.47534 * 296.10657 * 1 2 3 33 33 H 1.09003 * 109.47254 * 56.09970 * 1 2 3 34 34 H 1.08995 * 109.47558 * 176.10020 * 1 2 3 35 35 H 1.09000 * 110.36191 * 86.08035 * 4 2 1 36 36 H 1.09000 * 110.45940 * 323.80824 * 4 2 1 37 37 H 1.08009 * 126.47995 * 359.92527 * 9 8 6 38 38 H 1.07997 * 125.80494 * 180.02562 * 13 10 9 39 39 H 1.08997 * 109.88431 * 239.52272 * 16 5 4 40 40 H 1.08996 * 109.88401 * 118.35807 * 16 5 4 41 41 H 1.00906 * 110.99712 * 149.58982 * 19 17 16 42 42 H 1.09003 * 109.46782 * 59.99657 * 20 19 17 43 43 H 1.08996 * 109.47374 * 300.00542 * 20 19 17 44 44 H 0.96995 * 120.00163 * 0.02562 * 23 21 20 45 45 H 0.97002 * 120.00218 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0182 0.0000 4 6 2.0852 -0.8068 -1.2002 5 7 3.4271 -1.2432 -0.7732 6 6 4.4476 -1.5618 -1.5938 7 8 5.5445 -1.8135 -1.1312 8 6 4.2358 -1.6052 -3.0458 9 6 5.2046 -1.7823 -3.9895 10 6 4.5649 -1.7591 -5.2488 11 6 5.1951 -1.9069 -6.5262 12 7 5.6949 -2.0247 -7.5395 13 6 3.2165 -1.5671 -5.0158 14 7 3.0237 -1.4806 -3.6883 15 1 2.1674 -1.3490 -3.2521 16 6 3.4673 -1.2741 0.6961 17 6 2.0861 -0.8078 1.2023 18 1 1.4478 -1.6631 1.4240 19 7 2.2289 0.0521 2.3848 20 6 2.2894 -0.7494 3.6144 21 6 2.4363 0.1649 4.8032 22 8 2.4862 1.3660 4.6420 23 7 2.5072 -0.3518 6.0460 24 6 2.6414 0.4801 7.1276 25 1 2.6898 1.5493 6.9837 26 6 2.7139 -0.0526 8.4088 27 7 2.6535 -1.3536 8.5840 28 14 2.8960 1.0807 9.8826 29 1 2.9392 2.4912 9.4200 30 1 1.7404 0.8941 10.7963 31 1 4.1538 0.7578 10.6029 32 1 -0.3634 0.4522 0.9228 33 1 -0.3634 0.5732 -0.8530 34 1 -0.3634 -1.0252 -0.0699 35 1 2.1560 -0.1721 -2.0836 36 1 1.4524 -1.6705 -1.4042 37 1 6.2612 -1.9143 -3.8082 38 1 2.4477 -1.5021 -5.7716 39 1 4.2425 -0.5997 1.0600 40 1 3.6649 -2.2893 1.0403 41 1 1.4828 0.7299 2.4312 42 1 3.1448 -1.4234 3.5669 43 1 1.3734 -1.3315 3.7141 44 1 2.4641 -1.3121 6.1752 45 1 2.7046 -1.7254 9.4785 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001214407354.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:52:08 Heat of formation + Delta-G solvation = -8.187777 kcal Electronic energy + Delta-G solvation = -28697.514492 eV Core-core repulsion = 24522.083798 eV Total energy + Delta-G solvation = -4175.430694 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 2.14 seconds Orbital eigenvalues (eV) -42.70898 -40.90669 -40.08245 -38.98118 -37.44482 -36.25516 -35.62603 -33.56770 -33.20811 -32.63634 -31.18139 -29.80803 -27.94060 -27.50341 -26.00480 -24.08107 -23.89495 -22.29865 -21.47443 -21.20161 -20.96250 -19.90538 -19.40012 -18.11272 -17.65902 -17.35504 -17.03159 -16.68631 -16.53346 -16.24315 -16.07935 -15.71503 -15.32780 -15.24314 -14.97568 -14.80797 -14.57892 -14.36211 -14.21798 -14.10447 -13.92311 -13.77555 -13.71958 -13.52220 -13.33265 -13.31383 -12.94210 -12.92081 -12.72354 -12.40556 -12.17302 -12.12106 -11.99212 -11.51768 -11.51064 -11.32701 -10.34657 -10.20540 -10.01158 -9.86824 -9.41184 -9.36287 -8.46777 -5.95333 0.37281 0.75841 1.36713 1.42426 1.56145 1.60244 1.83025 1.99600 2.05594 2.15601 2.29409 2.67211 2.90328 3.11751 3.20907 3.29169 3.41987 3.52346 3.71575 4.02275 4.13996 4.17722 4.20594 4.23641 4.29436 4.34453 4.48206 4.53947 4.56948 4.59276 4.72085 4.82843 4.88333 4.93052 5.02026 5.10359 5.25208 5.33986 5.41496 5.44336 5.57835 5.88744 6.09308 6.27518 6.34012 6.41531 6.60031 6.65676 6.96012 7.12997 7.56720 8.11727 8.70681 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.026359 B = 0.001744 C = 0.001676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.017956 B =16053.715513 C =16698.275269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.096 4.096 3 H 0.085 0.915 4 C 0.087 3.913 5 N -0.614 5.614 6 C 0.596 3.404 7 O -0.576 6.576 8 C -0.057 4.057 9 C -0.064 4.064 10 C -0.160 4.160 11 C 0.315 3.685 12 N -0.489 5.489 13 C 0.146 3.854 14 N -0.508 5.508 15 H 0.442 0.558 16 C 0.114 3.886 17 C 0.083 3.917 18 H 0.085 0.915 19 N -0.673 5.673 20 C 0.065 3.935 21 C 0.437 3.563 22 O -0.623 6.623 23 N -0.573 5.573 24 C -0.334 4.334 25 H 0.079 0.921 26 C -0.012 4.012 27 N -0.920 5.920 28 Si 0.992 3.008 29 H -0.273 1.273 30 H -0.269 1.269 31 H -0.273 1.273 32 H 0.051 0.949 33 H 0.084 0.916 34 H 0.076 0.924 35 H 0.103 0.897 36 H 0.112 0.888 37 H 0.145 0.855 38 H 0.240 0.760 39 H 0.052 0.948 40 H 0.065 0.935 41 H 0.354 0.646 42 H 0.097 0.903 43 H 0.076 0.924 44 H 0.396 0.604 45 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.562 -4.127 -26.063 28.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.115 4.115 3 H 0.103 0.897 4 C -0.034 4.034 5 N -0.347 5.347 6 C 0.387 3.613 7 O -0.455 6.455 8 C -0.168 4.168 9 C -0.091 4.091 10 C -0.170 4.170 11 C 0.001 3.999 12 N -0.166 5.166 13 C -0.001 4.001 14 N -0.109 5.109 15 H 0.289 0.711 16 C -0.009 4.009 17 C -0.028 4.028 18 H 0.102 0.898 19 N -0.307 5.307 20 C -0.067 4.067 21 C 0.225 3.775 22 O -0.509 6.509 23 N -0.211 5.211 24 C -0.463 4.463 25 H 0.097 0.903 26 C -0.212 4.212 27 N -0.561 5.561 28 Si 0.816 3.184 29 H -0.198 1.198 30 H -0.195 1.195 31 H -0.199 1.199 32 H 0.070 0.930 33 H 0.103 0.897 34 H 0.095 0.905 35 H 0.121 0.879 36 H 0.130 0.870 37 H 0.163 0.837 38 H 0.257 0.743 39 H 0.070 0.930 40 H 0.084 0.916 41 H 0.175 0.825 42 H 0.115 0.885 43 H 0.093 0.907 44 H 0.230 0.770 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -8.582 -3.703 -27.208 28.769 hybrid contribution -0.538 -0.172 2.050 2.126 sum -9.120 -3.875 -25.159 27.040 Atomic orbital electron populations 1.21762 0.91171 1.03710 1.03239 1.22473 0.97790 0.99350 0.91901 0.89656 1.22965 0.81996 0.99863 0.98623 1.48304 1.13139 1.66435 1.06804 1.17058 0.82840 0.76662 0.84710 1.90871 1.25409 1.52363 1.76904 1.19413 0.86974 1.19753 0.90643 1.21082 0.99400 0.98901 0.89759 1.15395 0.93892 1.22073 0.85672 1.24852 0.92273 0.91182 0.91582 1.81312 1.09330 1.13082 1.12869 1.23044 0.96059 0.95621 0.85377 1.42388 1.09144 1.52794 1.06547 0.71051 1.21952 0.98815 1.00931 0.79253 1.22655 0.94029 0.95889 0.90187 0.89761 1.59898 1.53804 1.16760 1.00238 1.21583 1.02972 0.94325 0.87829 1.20886 0.82301 0.89436 0.84876 1.90496 1.56833 1.17560 1.86053 1.41942 1.64478 1.09648 1.04995 1.19702 1.49218 0.91717 0.85687 0.90314 1.26014 0.96368 0.97783 1.01020 1.69672 1.50265 1.11575 1.24555 0.84887 0.78262 0.77928 0.77360 1.19803 1.19463 1.19869 0.93017 0.89678 0.90481 0.87934 0.86985 0.83675 0.74341 0.92989 0.91625 0.82494 0.88508 0.90662 0.76977 0.91328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.85 9.31 71.98 0.67 -0.18 16 2 C -0.10 -1.02 3.07 -9.40 -0.03 -1.05 16 3 H 0.09 1.24 8.14 -2.39 -0.02 1.23 16 4 C 0.09 0.55 4.70 86.86 0.41 0.96 16 5 N -0.61 -10.48 3.33 -816.38 -2.72 -13.19 16 6 C 0.60 12.96 7.81 86.48 0.68 13.64 16 7 O -0.58 -18.58 17.20 -4.29 -0.07 -18.65 16 8 C -0.06 -0.79 6.76 40.02 0.27 -0.52 16 9 C -0.06 -0.98 10.54 22.59 0.24 -0.74 16 10 C -0.16 -1.72 5.97 -21.30 -0.13 -1.84 16 11 C 0.31 5.12 15.83 88.33 1.40 6.52 16 12 N -0.49 -10.88 18.54 19.00 0.35 -10.53 16 13 C 0.15 0.23 11.90 84.28 1.00 1.23 16 14 N -0.51 -1.59 5.28 -183.26 -0.97 -2.56 16 15 H 0.44 -1.40 5.29 -92.71 -0.49 -1.89 16 16 C 0.11 2.52 6.56 86.73 0.57 3.09 16 17 C 0.08 1.46 2.71 46.10 0.12 1.59 16 18 H 0.08 1.19 7.80 -2.39 -0.02 1.18 16 19 N -0.67 -18.28 5.92 -489.46 -2.90 -21.17 16 20 C 0.07 2.04 6.02 85.56 0.52 2.55 16 21 C 0.44 20.02 7.82 87.65 0.69 20.71 16 22 O -0.62 -33.49 15.78 -3.06 -0.05 -33.54 16 23 N -0.57 -28.76 5.29 -306.99 -1.62 -30.38 16 24 C -0.33 -18.73 9.68 84.04 0.81 -17.92 16 25 H 0.08 4.73 7.16 -2.91 -0.02 4.71 16 26 C -0.01 -0.64 5.50 84.93 0.47 -0.17 16 27 N -0.92 -49.07 13.05 21.66 0.28 -48.79 16 28 Si 0.99 42.57 29.55 68.60 2.03 44.60 16 29 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 30 H -0.27 -10.99 7.11 99.48 0.71 -10.29 16 31 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 32 H 0.05 0.52 8.14 -2.38 -0.02 0.50 16 33 H 0.08 0.18 8.14 -2.39 -0.02 0.16 16 34 H 0.08 0.24 8.07 -2.39 -0.02 0.22 16 35 H 0.10 0.14 6.23 -2.39 -0.01 0.13 16 36 H 0.11 -0.03 7.66 -2.39 -0.02 -0.05 16 37 H 0.15 2.59 8.06 -2.91 -0.02 2.57 16 38 H 0.24 -2.00 8.06 -2.91 -0.02 -2.03 16 39 H 0.05 1.55 8.03 -2.39 -0.02 1.53 16 40 H 0.07 1.48 8.14 -2.39 -0.02 1.47 16 41 H 0.35 9.79 8.20 -89.69 -0.74 9.05 16 42 H 0.10 2.87 8.13 -2.39 -0.02 2.85 16 43 H 0.08 1.94 8.08 -2.39 -0.02 1.92 16 44 H 0.40 18.85 7.90 -92.71 -0.73 18.11 16 45 H 0.28 13.83 8.31 -92.71 -0.77 13.06 16 Total: -1.00 -84.87 388.96 1.14 -83.73 By element: Atomic # 1 Polarization: 23.50 SS G_CDS: -0.88 Total: 22.62 kcal Atomic # 6 Polarization: 20.18 SS G_CDS: 7.68 Total: 27.86 kcal Atomic # 7 Polarization: -119.06 SS G_CDS: -7.57 Total: -126.62 kcal Atomic # 8 Polarization: -52.07 SS G_CDS: -0.12 Total: -52.19 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 2.03 Total: 44.60 kcal Total: -84.87 1.14 -83.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001214407354.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.543 kcal (2) G-P(sol) polarization free energy of solvation -84.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.14 seconds