Wall clock time and date at job start Wed Apr 1 2020 02:53:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 110.30100 * 2 1 4 4 C 1.54387 * 110.34369 * 237.71740 * 2 1 3 5 5 N 1.48145 * 104.61374 * 217.26180 * 4 2 1 6 6 C 1.34783 * 127.83525 * 219.60239 * 5 4 2 7 7 O 1.21612 * 119.99847 * 173.36608 * 6 5 4 8 8 C 1.47371 * 119.99904 * 353.36963 * 6 5 4 9 9 C 1.38127 * 126.46804 * 351.18050 * 8 6 5 10 10 N 1.34436 * 108.38365 * 179.82940 * 9 8 6 11 11 H 0.97001 * 125.38578 * 180.12457 * 10 9 8 12 12 C 1.37702 * 109.22409 * 0.43814 * 10 9 8 13 13 C 1.43196 * 125.84745 * 179.73141 * 12 10 9 14 14 N 8.74692 * 129.87833 * 265.90595 * 2 1 3 15 15 C 1.36358 * 108.31425 * 359.72789 * 12 10 9 16 16 C 1.48143 * 104.32503 * 39.58496 * 5 4 2 17 17 C 1.54278 * 110.34320 * 122.17738 * 2 1 3 18 18 H 1.09003 * 110.34220 * 0.02562 * 17 2 1 19 19 N 1.46899 * 110.34451 * 237.74608 * 17 2 1 20 20 C 1.46898 * 111.00287 * 154.99870 * 19 17 2 21 21 C 1.50699 * 109.47168 * 179.97438 * 20 19 17 22 22 O 1.21291 * 120.00295 * 0.02562 * 21 20 19 23 23 N 1.34778 * 120.00293 * 180.02562 * 21 20 19 24 24 C 1.37088 * 120.00480 * 180.02562 * 23 21 20 25 25 H 1.08001 * 119.99855 * 0.02562 * 24 23 21 26 26 C 1.38956 * 120.00570 * 179.97438 * 24 23 21 27 27 N 1.31410 * 119.99529 * 0.02562 * 26 24 23 28 28 Si 1.86793 * 120.00493 * 179.97438 * 26 24 23 29 29 H 1.48501 * 109.47104 * 90.00295 * 28 26 24 30 30 H 1.48493 * 109.47339 * 210.00454 * 28 26 24 31 31 H 1.48501 * 109.46907 * 330.00474 * 28 26 24 32 32 H 1.09003 * 109.47161 * 297.82188 * 1 2 3 33 33 H 1.09005 * 109.47125 * 177.82138 * 1 2 3 34 34 H 1.09002 * 109.47199 * 57.82026 * 1 2 3 35 35 H 1.09001 * 110.40471 * 336.04086 * 4 2 1 36 36 H 1.08997 * 110.40552 * 98.47654 * 4 2 1 37 37 H 1.07998 * 125.80683 * 359.97438 * 9 8 6 38 38 H 1.08002 * 126.49767 * 179.97438 * 15 12 10 39 39 H 1.09001 * 110.40347 * 201.62528 * 16 5 4 40 40 H 1.08998 * 110.40480 * 79.19977 * 16 5 4 41 41 H 1.00901 * 110.99600 * 278.95278 * 19 17 2 42 42 H 1.08997 * 109.47333 * 299.99941 * 20 19 17 43 43 H 1.09005 * 109.47012 * 59.99765 * 20 19 17 44 44 H 0.97001 * 119.99973 * 0.02562 * 23 21 20 45 45 H 0.97000 * 120.00000 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9082 1.0223 0.0000 4 6 2.0667 -0.7731 -1.2238 5 7 3.2664 -1.4823 -0.7212 6 6 4.4426 -1.6672 -1.3528 7 8 5.3786 -2.1691 -0.7604 8 6 4.5945 -1.2612 -2.7614 9 6 3.5871 -0.8410 -3.6078 10 7 4.1295 -0.5582 -4.8049 11 1 3.6426 -0.2401 -5.5812 12 6 5.4846 -0.7981 -4.7567 13 6 6.4067 -0.6202 -5.8377 14 7 7.1382 -0.4792 -6.6953 15 6 5.7983 -1.2340 -3.5033 16 6 2.8802 -1.9415 0.6332 17 6 2.0664 -0.7703 1.2244 18 1 1.2398 -1.1492 1.8256 19 7 2.9331 0.0966 2.0337 20 6 2.9731 -0.3555 3.4308 21 6 3.8704 0.5556 4.2281 22 8 4.4220 1.4900 3.6860 23 7 4.0600 0.3323 5.5437 24 6 4.8759 1.1614 6.2692 25 1 5.3663 1.9939 5.7866 26 6 5.0710 0.9315 7.6256 27 7 4.4739 -0.0811 8.2129 28 14 6.1832 2.0608 8.6139 29 1 5.3823 3.1796 9.1725 30 1 6.8056 1.2954 9.7238 31 1 7.2460 2.6053 7.7312 32 1 -0.3633 0.4796 0.9089 33 1 -0.3634 -1.0270 -0.0391 34 1 -0.3634 0.5473 -0.8698 35 1 1.3235 -1.4875 -1.5779 36 1 2.3401 -0.0813 -2.0205 37 1 2.5418 -0.7522 -3.3509 38 1 6.7798 -1.5072 -3.1451 39 1 3.7673 -2.1312 1.2375 40 1 2.2640 -2.8384 0.5691 41 1 3.8620 0.1455 1.6427 42 1 1.9669 -0.3322 3.8492 43 1 3.3603 -1.3736 3.4723 44 1 3.6193 -0.4151 5.9772 45 1 4.6103 -0.2419 9.1597 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001214464106.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:53:25 Heat of formation + Delta-G solvation = 26.424374 kcal Electronic energy + Delta-G solvation = -29028.973716 eV Core-core repulsion = 24855.043918 eV Total energy + Delta-G solvation = -4173.929798 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 4.76 seconds Orbital eigenvalues (eV) -42.03658 -40.08816 -38.32631 -37.70946 -36.89838 -34.63271 -33.75094 -32.68269 -31.95072 -31.18507 -30.61781 -28.65915 -26.76872 -26.29865 -24.40407 -23.25730 -23.08296 -21.89227 -20.64091 -20.21088 -19.23225 -18.91423 -17.84366 -17.20856 -16.27666 -16.21783 -15.87232 -15.57513 -15.43220 -15.15716 -14.75657 -14.56314 -14.43204 -14.10996 -13.89591 -13.64548 -13.52988 -13.43318 -13.35404 -13.09607 -12.98577 -12.86852 -12.66133 -12.41696 -12.10025 -12.00768 -11.58538 -11.52235 -11.15222 -11.07003 -11.00991 -10.86041 -10.36360 -10.18294 -10.09954 -9.65683 -9.47564 -9.02743 -8.88735 -8.40957 -8.01424 -7.92100 -6.38401 -3.78828 0.85797 1.42412 1.77783 2.64352 2.72953 2.91726 3.20795 3.27786 3.29254 3.35603 3.53400 3.94473 4.06290 4.23917 4.25105 4.29480 4.39044 4.56312 4.76612 4.81283 5.00856 5.04073 5.14536 5.19281 5.21898 5.28016 5.31890 5.44345 5.49533 5.54237 5.58725 5.78073 5.87013 5.89152 5.99196 6.01231 6.06081 6.10189 6.16857 6.33018 6.58084 6.96463 7.23052 7.40269 7.58741 7.63835 8.09356 8.09978 8.64875 9.21562 9.57927 10.09537 10.79379 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.013600 B = 0.002140 C = 0.001946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2058.326046 B =13078.205841 C =14386.831005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.099 4.099 3 H 0.098 0.902 4 C 0.090 3.910 5 N -0.619 5.619 6 C 0.608 3.392 7 O -0.534 6.534 8 C -0.215 4.215 9 C 0.071 3.929 10 N -0.520 5.520 11 H 0.427 0.573 12 C 0.044 3.956 13 C 0.279 3.721 14 N -0.403 5.403 15 C -0.046 4.046 16 C 0.074 3.926 17 C 0.077 3.923 18 H 0.095 0.905 19 N -0.657 5.657 20 C 0.049 3.951 21 C 0.441 3.559 22 O -0.583 6.583 23 N -0.564 5.564 24 C -0.298 4.298 25 H 0.103 0.897 26 C 0.021 3.979 27 N -0.902 5.902 28 Si 0.930 3.070 29 H -0.278 1.278 30 H -0.284 1.284 31 H -0.270 1.270 32 H 0.064 0.936 33 H 0.055 0.945 34 H 0.056 0.944 35 H 0.075 0.925 36 H 0.086 0.914 37 H 0.197 0.803 38 H 0.162 0.838 39 H 0.086 0.914 40 H 0.074 0.926 41 H 0.354 0.646 42 H 0.087 0.913 43 H 0.045 0.955 44 H 0.392 0.608 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.998 -5.520 -24.323 27.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.119 4.119 3 H 0.116 0.884 4 C -0.033 4.033 5 N -0.353 5.353 6 C 0.398 3.602 7 O -0.411 6.411 8 C -0.225 4.225 9 C -0.070 4.070 10 N -0.114 5.114 11 H 0.265 0.735 12 C -0.067 4.067 13 C -0.037 4.037 14 N -0.080 5.080 15 C -0.074 4.074 16 C -0.050 4.050 17 C -0.035 4.035 18 H 0.113 0.887 19 N -0.289 5.289 20 C -0.084 4.084 21 C 0.226 3.774 22 O -0.467 6.467 23 N -0.201 5.201 24 C -0.427 4.427 25 H 0.120 0.880 26 C -0.180 4.180 27 N -0.544 5.544 28 Si 0.757 3.243 29 H -0.204 1.204 30 H -0.210 1.210 31 H -0.194 1.194 32 H 0.083 0.917 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.093 0.907 36 H 0.104 0.896 37 H 0.213 0.787 38 H 0.180 0.820 39 H 0.104 0.896 40 H 0.092 0.908 41 H 0.174 0.826 42 H 0.105 0.895 43 H 0.063 0.937 44 H 0.225 0.775 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -10.368 -4.491 -25.576 27.961 hybrid contribution 0.172 -0.657 0.806 1.054 sum -10.196 -5.148 -24.770 27.276 Atomic orbital electron populations 1.21795 0.93783 1.01732 1.02490 1.22190 0.95956 1.01019 0.92717 0.88382 1.22928 0.86981 0.95578 0.97786 1.48668 1.12852 1.56197 1.17567 1.16904 0.80647 0.78020 0.84627 1.90840 1.38137 1.44990 1.67089 1.19543 0.93836 1.14452 0.94662 1.23175 0.99739 1.00127 0.83994 1.41628 1.06366 1.50480 1.12903 0.73489 1.15165 0.81940 1.17369 0.92227 1.24260 0.93797 0.93541 0.92053 1.81342 1.08078 1.09692 1.08871 1.21135 0.99234 0.97586 0.89488 1.23200 1.00171 0.97904 0.83707 1.22678 0.96067 0.90545 0.94203 0.88660 1.60227 1.17554 1.50165 1.00948 1.21733 1.00617 0.96653 0.89398 1.19798 0.86345 0.88026 0.83199 1.90529 1.52807 1.32998 1.70327 1.41852 1.42850 1.28395 1.06956 1.19698 1.22825 1.09421 0.90802 0.87952 1.25258 0.98334 0.97384 0.97029 1.69611 1.43674 1.28909 1.12164 0.85857 0.79954 0.79469 0.79015 1.20432 1.20960 1.19425 0.91657 0.92619 0.92482 0.90671 0.89614 0.78683 0.82025 0.89572 0.90757 0.82551 0.89499 0.93746 0.77475 0.91918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.82 8.92 37.16 0.33 -0.48 16 2 C -0.10 -0.78 3.45 -89.22 -0.31 -1.09 16 3 H 0.10 0.97 7.95 -51.93 -0.41 0.56 16 4 C 0.09 0.53 5.17 -2.41 -0.01 0.52 16 5 N -0.62 -6.10 3.32 -170.60 -0.57 -6.66 16 6 C 0.61 7.43 7.89 -12.54 -0.10 7.33 16 7 O -0.53 -8.98 17.18 5.27 0.09 -8.89 16 8 C -0.22 -1.90 6.06 -105.01 -0.64 -2.54 16 9 C 0.07 0.32 10.28 -16.45 -0.17 0.15 16 10 N -0.52 -1.94 6.02 -10.29 -0.06 -2.00 16 11 H 0.43 0.17 8.96 -40.82 -0.37 -0.19 16 12 C 0.04 0.30 6.90 -83.98 -0.58 -0.28 16 13 C 0.28 2.36 15.88 -22.48 -0.36 2.00 16 14 N -0.40 -4.34 18.54 41.84 0.78 -3.56 16 15 C -0.05 -0.40 10.60 -39.04 -0.41 -0.82 16 16 C 0.07 0.78 6.51 -2.41 -0.02 0.76 16 17 C 0.08 0.80 3.03 -66.32 -0.20 0.60 16 18 H 0.10 0.88 7.39 -51.93 -0.38 0.50 16 19 N -0.66 -10.05 5.80 -106.52 -0.62 -10.67 16 20 C 0.05 0.83 6.02 -4.98 -0.03 0.80 16 21 C 0.44 10.43 7.82 -10.99 -0.09 10.34 16 22 O -0.58 -15.99 15.78 5.55 0.09 -15.90 16 23 N -0.56 -14.35 5.29 -10.96 -0.06 -14.41 16 24 C -0.30 -8.39 9.68 -14.94 -0.14 -8.54 16 25 H 0.10 3.03 7.16 -52.49 -0.38 2.66 16 26 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 27 N -0.90 -24.67 13.05 55.50 0.72 -23.95 16 28 Si 0.93 21.31 29.55 -169.99 -5.02 16.28 16 29 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 30 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 31 H -0.27 -6.20 7.11 56.52 0.40 -5.79 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.05 0.26 8.10 -51.93 -0.42 -0.16 16 34 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 35 H 0.08 0.27 7.83 -51.93 -0.41 -0.13 16 36 H 0.09 0.34 5.02 -51.93 -0.26 0.08 16 37 H 0.20 0.26 5.07 -52.49 -0.27 0.00 16 38 H 0.16 1.44 8.06 -52.49 -0.42 1.02 16 39 H 0.09 1.15 7.69 -51.93 -0.40 0.76 16 40 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.35 6.17 8.12 -39.29 -0.32 5.85 16 42 H 0.09 1.32 8.07 -51.93 -0.42 0.90 16 43 H 0.04 0.69 8.12 -51.93 -0.42 0.27 16 44 H 0.39 9.49 7.90 -40.82 -0.32 9.17 16 45 H 0.27 7.01 8.31 -40.82 -0.34 6.68 16 LS Contribution 387.73 15.07 5.84 5.84 Total: -1.00 -37.05 387.73 -7.22 -44.27 By element: Atomic # 1 Polarization: 16.00 SS G_CDS: -5.60 Total: 10.40 kcal Atomic # 6 Polarization: 12.07 SS G_CDS: -2.82 Total: 9.25 kcal Atomic # 7 Polarization: -61.46 SS G_CDS: 0.20 Total: -61.26 kcal Atomic # 8 Polarization: -24.96 SS G_CDS: 0.18 Total: -24.79 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -37.05 -7.22 -44.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001214464106.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.693 kcal (2) G-P(sol) polarization free energy of solvation -37.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.268 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.76 seconds