Wall clock time and date at job start Wed Apr 1 2020 02:53:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 110.30100 * 2 1 4 4 C 1.54387 * 110.34369 * 237.71740 * 2 1 3 5 5 N 1.48145 * 104.61374 * 217.26180 * 4 2 1 6 6 C 1.34783 * 127.83525 * 219.60239 * 5 4 2 7 7 O 1.21612 * 119.99847 * 173.36608 * 6 5 4 8 8 C 1.47371 * 119.99904 * 353.36963 * 6 5 4 9 9 C 1.38127 * 126.46804 * 351.18050 * 8 6 5 10 10 N 1.34436 * 108.38365 * 179.82940 * 9 8 6 11 11 H 0.97001 * 125.38578 * 180.12457 * 10 9 8 12 12 C 1.37702 * 109.22409 * 0.43814 * 10 9 8 13 13 C 1.43196 * 125.84745 * 179.73141 * 12 10 9 14 14 N 8.74692 * 129.87833 * 265.90595 * 2 1 3 15 15 C 1.36358 * 108.31425 * 359.72789 * 12 10 9 16 16 C 1.48143 * 104.32503 * 39.58496 * 5 4 2 17 17 C 1.54278 * 110.34320 * 122.17738 * 2 1 3 18 18 H 1.09003 * 110.34220 * 0.02562 * 17 2 1 19 19 N 1.46899 * 110.34451 * 237.74608 * 17 2 1 20 20 C 1.46898 * 111.00287 * 154.99870 * 19 17 2 21 21 C 1.50699 * 109.47168 * 179.97438 * 20 19 17 22 22 O 1.21291 * 120.00295 * 0.02562 * 21 20 19 23 23 N 1.34778 * 120.00293 * 180.02562 * 21 20 19 24 24 C 1.37088 * 120.00480 * 180.02562 * 23 21 20 25 25 H 1.08001 * 119.99855 * 0.02562 * 24 23 21 26 26 C 1.38956 * 120.00570 * 179.97438 * 24 23 21 27 27 N 1.31410 * 119.99529 * 0.02562 * 26 24 23 28 28 Si 1.86793 * 120.00493 * 179.97438 * 26 24 23 29 29 H 1.48501 * 109.47104 * 90.00295 * 28 26 24 30 30 H 1.48493 * 109.47339 * 210.00454 * 28 26 24 31 31 H 1.48501 * 109.46907 * 330.00474 * 28 26 24 32 32 H 1.09003 * 109.47161 * 297.82188 * 1 2 3 33 33 H 1.09005 * 109.47125 * 177.82138 * 1 2 3 34 34 H 1.09002 * 109.47199 * 57.82026 * 1 2 3 35 35 H 1.09001 * 110.40471 * 336.04086 * 4 2 1 36 36 H 1.08997 * 110.40552 * 98.47654 * 4 2 1 37 37 H 1.07998 * 125.80683 * 359.97438 * 9 8 6 38 38 H 1.08002 * 126.49767 * 179.97438 * 15 12 10 39 39 H 1.09001 * 110.40347 * 201.62528 * 16 5 4 40 40 H 1.08998 * 110.40480 * 79.19977 * 16 5 4 41 41 H 1.00901 * 110.99600 * 278.95278 * 19 17 2 42 42 H 1.08997 * 109.47333 * 299.99941 * 20 19 17 43 43 H 1.09005 * 109.47012 * 59.99765 * 20 19 17 44 44 H 0.97001 * 119.99973 * 0.02562 * 23 21 20 45 45 H 0.97000 * 120.00000 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9082 1.0223 0.0000 4 6 2.0667 -0.7731 -1.2238 5 7 3.2664 -1.4823 -0.7212 6 6 4.4426 -1.6672 -1.3528 7 8 5.3786 -2.1691 -0.7604 8 6 4.5945 -1.2612 -2.7614 9 6 3.5871 -0.8410 -3.6078 10 7 4.1295 -0.5582 -4.8049 11 1 3.6426 -0.2401 -5.5812 12 6 5.4846 -0.7981 -4.7567 13 6 6.4067 -0.6202 -5.8377 14 7 7.1382 -0.4792 -6.6953 15 6 5.7983 -1.2340 -3.5033 16 6 2.8802 -1.9415 0.6332 17 6 2.0664 -0.7703 1.2244 18 1 1.2398 -1.1492 1.8256 19 7 2.9331 0.0966 2.0337 20 6 2.9731 -0.3555 3.4308 21 6 3.8704 0.5556 4.2281 22 8 4.4220 1.4900 3.6860 23 7 4.0600 0.3323 5.5437 24 6 4.8759 1.1614 6.2692 25 1 5.3663 1.9939 5.7866 26 6 5.0710 0.9315 7.6256 27 7 4.4739 -0.0811 8.2129 28 14 6.1832 2.0608 8.6139 29 1 5.3823 3.1796 9.1725 30 1 6.8056 1.2954 9.7238 31 1 7.2460 2.6053 7.7312 32 1 -0.3633 0.4796 0.9089 33 1 -0.3634 -1.0270 -0.0391 34 1 -0.3634 0.5473 -0.8698 35 1 1.3235 -1.4875 -1.5779 36 1 2.3401 -0.0813 -2.0205 37 1 2.5418 -0.7522 -3.3509 38 1 6.7798 -1.5072 -3.1451 39 1 3.7673 -2.1312 1.2375 40 1 2.2640 -2.8384 0.5691 41 1 3.8620 0.1455 1.6427 42 1 1.9669 -0.3322 3.8492 43 1 3.3603 -1.3736 3.4723 44 1 3.6193 -0.4151 5.9772 45 1 4.6103 -0.2419 9.1597 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001214464106.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:53:20 Heat of formation + Delta-G solvation = -3.393098 kcal Electronic energy + Delta-G solvation = -29030.266698 eV Core-core repulsion = 24855.043918 eV Total energy + Delta-G solvation = -4175.222781 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 4.50 seconds Orbital eigenvalues (eV) -42.58978 -40.90914 -40.03380 -38.79306 -37.63913 -36.14814 -35.42508 -33.47286 -33.21516 -32.51487 -31.28214 -29.65625 -27.77274 -27.30962 -25.97468 -24.21651 -23.67947 -22.58330 -21.31716 -21.11565 -20.73878 -19.91639 -19.66961 -17.95601 -17.69213 -17.13117 -16.72261 -16.55855 -16.36390 -16.26384 -16.05449 -15.84046 -15.56820 -15.27538 -15.13233 -14.78050 -14.49470 -14.19349 -14.07787 -13.99803 -13.76620 -13.75102 -13.59139 -13.48422 -13.35283 -13.05014 -12.95500 -12.76364 -12.73060 -12.42209 -12.13460 -11.89124 -11.69031 -11.51099 -11.49778 -11.03797 -10.34226 -10.27403 -10.01317 -9.84256 -9.45631 -9.14729 -8.46570 -5.95055 0.31267 0.74130 1.18923 1.37737 1.41188 1.54137 1.99011 2.06023 2.07166 2.23722 2.29436 2.52518 2.93741 3.01692 3.20561 3.47700 3.62376 3.68216 3.86176 3.99487 4.17792 4.24979 4.28621 4.34968 4.46322 4.49466 4.55258 4.61045 4.65709 4.75574 4.78909 4.87119 4.94133 5.03644 5.25388 5.29503 5.40339 5.41062 5.48426 5.51837 5.61337 5.94347 6.17339 6.22072 6.33223 6.38475 6.60657 6.65120 7.13000 7.25236 7.56646 8.12549 8.70804 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.013600 B = 0.002140 C = 0.001946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2058.326046 B =13078.205841 C =14386.831005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.094 4.094 3 H 0.075 0.925 4 C 0.089 3.911 5 N -0.618 5.618 6 C 0.599 3.401 7 O -0.601 6.601 8 C -0.252 4.252 9 C 0.119 3.881 10 N -0.495 5.495 11 H 0.448 0.552 12 C 0.045 3.955 13 C 0.303 3.697 14 N -0.447 5.447 15 C -0.065 4.065 16 C 0.074 3.926 17 C 0.075 3.925 18 H 0.114 0.886 19 N -0.669 5.669 20 C 0.064 3.936 21 C 0.435 3.565 22 O -0.626 6.626 23 N -0.573 5.573 24 C -0.334 4.334 25 H 0.076 0.924 26 C -0.014 4.014 27 N -0.919 5.919 28 Si 0.993 3.007 29 H -0.269 1.269 30 H -0.270 1.270 31 H -0.276 1.276 32 H 0.047 0.953 33 H 0.074 0.926 34 H 0.078 0.922 35 H 0.117 0.883 36 H 0.110 0.890 37 H 0.240 0.760 38 H 0.144 0.856 39 H 0.047 0.953 40 H 0.103 0.897 41 H 0.336 0.664 42 H 0.113 0.887 43 H 0.060 0.940 44 H 0.397 0.603 45 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.474 -5.656 -25.854 30.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.114 4.114 3 H 0.093 0.907 4 C -0.032 4.032 5 N -0.351 5.351 6 C 0.392 3.608 7 O -0.483 6.483 8 C -0.262 4.262 9 C -0.025 4.025 10 N -0.091 5.091 11 H 0.291 0.709 12 C -0.067 4.067 13 C -0.012 4.012 14 N -0.124 5.124 15 C -0.093 4.093 16 C -0.050 4.050 17 C -0.036 4.036 18 H 0.132 0.868 19 N -0.299 5.299 20 C -0.068 4.068 21 C 0.223 3.777 22 O -0.512 6.512 23 N -0.210 5.210 24 C -0.464 4.464 25 H 0.094 0.906 26 C -0.213 4.213 27 N -0.560 5.560 28 Si 0.816 3.184 29 H -0.194 1.194 30 H -0.195 1.195 31 H -0.201 1.201 32 H 0.066 0.934 33 H 0.093 0.907 34 H 0.097 0.903 35 H 0.135 0.865 36 H 0.128 0.872 37 H 0.256 0.744 38 H 0.162 0.838 39 H 0.065 0.935 40 H 0.121 0.879 41 H 0.155 0.845 42 H 0.131 0.869 43 H 0.078 0.922 44 H 0.231 0.769 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -13.931 -4.627 -27.149 30.864 hybrid contribution 1.180 -0.615 1.285 1.850 sum -12.751 -5.242 -25.864 29.309 Atomic orbital electron populations 1.21763 0.91537 1.03170 1.02697 1.22154 0.97597 0.99548 0.92112 0.90703 1.23278 0.85989 0.96521 0.97385 1.48749 1.13353 1.55710 1.17247 1.17437 0.80372 0.77223 0.85784 1.90795 1.40439 1.48264 1.68785 1.19347 0.95269 1.17790 0.93749 1.23613 1.00281 0.95920 0.82641 1.41602 1.05007 1.48924 1.13552 0.70890 1.14830 0.83156 1.17841 0.90884 1.24340 0.93115 0.92291 0.91456 1.81363 1.09237 1.11381 1.10452 1.21119 0.99173 0.98427 0.90590 1.23169 0.98892 0.99056 0.83892 1.22911 0.95390 0.90383 0.94910 0.86831 1.60308 1.17073 1.52112 1.00450 1.21604 1.00094 0.95358 0.89760 1.20979 0.85899 0.87992 0.82836 1.90491 1.54512 1.35150 1.71080 1.41924 1.42981 1.28390 1.07723 1.19643 1.24702 1.10115 0.91917 0.90561 1.26038 0.99265 0.98692 0.97334 1.69667 1.44024 1.29552 1.12734 0.84935 0.78004 0.77908 0.77530 1.19394 1.19470 1.20055 0.93351 0.90671 0.90331 0.86475 0.87210 0.74425 0.83803 0.93467 0.87925 0.84521 0.86869 0.92214 0.76917 0.91279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.97 8.92 71.98 0.64 -0.32 16 2 C -0.09 -1.19 3.45 -9.89 -0.03 -1.22 16 3 H 0.07 1.34 7.95 -2.38 -0.02 1.32 16 4 C 0.09 0.65 5.17 86.53 0.45 1.10 16 5 N -0.62 -11.21 3.32 -811.90 -2.69 -13.90 16 6 C 0.60 14.81 7.89 86.65 0.68 15.50 16 7 O -0.60 -21.85 17.18 -4.07 -0.07 -21.92 16 8 C -0.25 -4.17 6.06 -20.11 -0.12 -4.29 16 9 C 0.12 0.58 10.28 84.27 0.87 1.45 16 10 N -0.50 -1.84 6.02 -186.47 -1.12 -2.96 16 11 H 0.45 -1.78 8.96 -92.71 -0.83 -2.61 16 12 C 0.04 0.55 6.90 39.03 0.27 0.82 16 13 C 0.30 4.95 15.88 88.33 1.40 6.35 16 14 N -0.45 -9.64 18.54 19.00 0.35 -9.29 16 15 C -0.06 -1.15 10.60 22.62 0.24 -0.91 16 16 C 0.07 1.48 6.51 86.53 0.56 2.04 16 17 C 0.07 1.42 3.03 45.82 0.14 1.56 16 18 H 0.11 1.76 7.39 -2.39 -0.02 1.74 16 19 N -0.67 -20.56 5.80 -490.92 -2.85 -23.40 16 20 C 0.06 2.19 6.02 85.56 0.52 2.70 16 21 C 0.44 21.29 7.82 87.66 0.69 21.97 16 22 O -0.63 -35.95 15.78 -3.06 -0.05 -36.00 16 23 N -0.57 -30.09 5.29 -306.99 -1.62 -31.72 16 24 C -0.33 -19.48 9.68 84.04 0.81 -18.66 16 25 H 0.08 4.76 7.16 -2.91 -0.02 4.74 16 26 C -0.01 -0.74 5.50 84.93 0.47 -0.27 16 27 N -0.92 -50.25 13.05 21.66 0.28 -49.97 16 28 Si 0.99 43.93 29.55 68.60 2.03 45.96 16 29 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 30 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 31 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 32 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.07 0.29 8.10 -2.38 -0.02 0.27 16 34 H 0.08 0.27 8.14 -2.39 -0.02 0.25 16 35 H 0.12 0.02 7.83 -2.39 -0.02 0.00 16 36 H 0.11 0.26 5.02 -2.39 -0.01 0.25 16 37 H 0.24 -0.99 5.07 -2.91 -0.01 -1.01 16 38 H 0.14 2.95 8.06 -2.91 -0.02 2.93 16 39 H 0.05 1.33 7.69 -2.39 -0.02 1.31 16 40 H 0.10 1.46 8.14 -2.39 -0.02 1.45 16 41 H 0.34 12.31 8.12 -89.69 -0.73 11.58 16 42 H 0.11 3.28 8.07 -2.39 -0.02 3.26 16 43 H 0.06 1.87 8.12 -2.38 -0.02 1.85 16 44 H 0.40 19.65 7.90 -92.71 -0.73 18.91 16 45 H 0.28 14.19 8.31 -92.71 -0.77 13.42 16 Total: -1.00 -88.81 387.73 0.64 -88.17 By element: Atomic # 1 Polarization: 28.42 SS G_CDS: -1.20 Total: 27.22 kcal Atomic # 6 Polarization: 20.24 SS G_CDS: 7.58 Total: 27.82 kcal Atomic # 7 Polarization: -123.59 SS G_CDS: -7.65 Total: -131.23 kcal Atomic # 8 Polarization: -57.81 SS G_CDS: -0.12 Total: -57.93 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.96 kcal Total: -88.81 0.64 -88.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001214464106.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.774 kcal (2) G-P(sol) polarization free energy of solvation -88.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.50 seconds