Wall clock time and date at job start Wed Apr 1 2020 04:08:23
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 H 1.09001 * 109.46859 * 2 1
4 4 C 1.47200 * 109.46865 * 119.99515 * 2 1 3
5 5 N 2.60795 * 109.46957 * 119.99795 * 2 1 3
6 6 C 1.52997 * 109.47183 * 239.99990 * 2 1 3
7 7 N 1.46496 * 109.47252 * 65.00020 * 6 2 1
8 8 C 1.34778 * 119.99995 * 81.34591 * 7 6 2
9 9 O 1.21359 * 120.00044 * 182.63324 * 8 7 6
10 10 C 1.49347 * 120.00035 * 2.63078 * 8 7 6
11 11 O 1.21384 * 119.99501 * 352.44457 * 10 8 7
12 12 N 1.34771 * 119.99703 * 172.44042 * 10 8 7
13 13 C 1.39935 * 119.99469 * 180.02562 * 12 10 8
14 14 C 1.40461 * 125.98318 * 0.02562 * 13 12 10
15 15 C 1.35215 * 107.86723 * 180.02562 * 14 13 12
16 16 N 1.34991 * 107.87860 * 0.21816 * 15 14 13
17 17 C 1.46496 * 125.97639 * 179.77874 * 16 15 14
18 18 C 1.50697 * 109.47515 * 125.00001 * 17 16 15
19 19 H 1.07995 * 119.99822 * 0.02562 * 18 17 16
20 20 C 1.37875 * 119.99798 * 179.97438 * 18 17 16
21 21 N 1.31517 * 119.99490 * 180.02562 * 20 18 17
22 22 Si 1.86796 * 120.00347 * 0.02562 * 20 18 17
23 23 H 1.48505 * 109.47173 * 89.99787 * 22 20 18
24 24 H 1.48498 * 109.46982 * 209.99834 * 22 20 18
25 25 H 1.48502 * 109.47271 * 329.99760 * 22 20 18
26 26 N 1.31279 * 125.97743 * 179.97438 * 13 12 10
27 27 C 1.46500 * 119.99862 * 261.34409 * 7 6 2
28 28 C 1.53007 * 117.49851 * 196.95435 * 27 7 6
29 29 C 1.52998 * 59.99910 * 252.51147 * 28 27 7
30 30 H 1.08992 * 109.47403 * 179.97438 * 1 2 3
31 31 H 1.09001 * 109.47416 * 300.00253 * 1 2 3
32 32 H 1.09002 * 109.46981 * 60.00037 * 1 2 3
33 33 H 1.09004 * 109.47012 * 305.00153 * 6 2 1
34 34 H 1.09003 * 109.47046 * 185.00346 * 6 2 1
35 35 H 0.96996 * 120.00187 * 359.97438 * 12 10 8
36 36 H 1.07993 * 126.06618 * 359.97046 * 14 13 12
37 37 H 1.07999 * 126.06348 * 179.97438 * 15 14 13
38 38 H 1.09002 * 109.46826 * 245.00561 * 17 16 15
39 39 H 1.09003 * 109.46438 * 5.00020 * 17 16 15
40 40 H 0.97005 * 119.99965 * 180.02562 * 21 20 18
41 41 H 1.08999 * 115.55217 * 342.65693 * 27 7 6
42 42 H 1.09008 * 117.49472 * 0.02562 * 28 27 7
43 43 H 1.08995 * 117.49904 * 145.01744 * 28 27 7
44 44 H 1.08997 * 117.49859 * 252.50975 * 29 28 27
45 45 H 1.09001 * 117.52093 * 107.48127 * 29 28 27
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0206 -0.6938 1.2020
5 7 2.3992 -1.2293 2.1295
6 6 2.0400 -0.7212 -1.2492
7 7 1.6525 0.0353 -2.4423
8 6 2.3817 1.0999 -2.8316
9 8 2.0338 1.7553 -3.7919
10 6 3.6178 1.4730 -2.0811
11 8 3.8922 0.9059 -1.0435
12 7 4.4286 2.4391 -2.5560
13 6 5.5871 2.7883 -1.8530
14 6 6.0242 2.2167 -0.6467
15 6 7.1789 2.8254 -0.2937
16 7 7.4639 3.7509 -1.2342
17 6 8.6262 4.6426 -1.2398
18 6 9.3741 4.4849 -2.5385
19 1 9.0189 3.7903 -3.2853
20 6 10.5112 5.2283 -2.7737
21 7 11.1636 5.0910 -3.9074
22 14 11.1252 6.4302 -1.4824
23 1 12.0680 5.7362 -0.5686
24 1 11.8225 7.5593 -2.1488
25 1 9.9732 6.9507 -0.7030
26 7 6.4561 3.7067 -2.2062
27 6 0.4723 -0.3653 -3.2124
28 6 0.3363 0.1844 -4.6338
29 6 -0.5698 0.7120 -3.5196
30 1 -0.3634 -1.0276 -0.0005
31 1 -0.3634 0.5139 0.8900
32 1 -0.3633 0.5138 -0.8900
33 1 1.6053 -1.7198 -1.2951
34 1 3.1263 -0.7995 -1.2055
35 1 4.2095 2.8918 -3.3854
36 1 5.5260 1.4313 -0.0980
37 1 7.7668 2.6119 0.5868
38 1 8.2925 5.6750 -1.1356
39 1 9.2836 4.3875 -0.4086
40 1 11.9639 5.6137 -4.0728
41 1 0.1110 -1.3768 -3.0269
42 1 1.1251 0.8437 -4.9961
43 1 -0.1145 -0.4656 -5.3837
44 1 -1.6167 0.4091 -3.5365
45 1 -0.3776 1.7186 -3.1484
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001255525881.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:08:23
Heat of formation + Delta-G solvation = 105.222209 kcal
Electronic energy + Delta-G solvation = -29803.826961 eV
Core-core repulsion = 25633.314094 eV
Total energy + Delta-G solvation = -4170.512868 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 345.159 amu
Computer time = 0.96 seconds
Orbital eigenvalues (eV)
-41.64593 -40.64044 -39.07315 -37.97724 -36.76195 -35.51818 -34.79923 -33.34912
-32.61440 -31.38603 -29.57198 -27.63357 -27.06108 -25.91775 -23.78236 -23.08100
-22.66247 -22.31594 -21.04899 -20.03061 -19.48439 -18.23301 -17.75888 -17.20666
-16.84425 -16.62823 -16.36922 -16.04497 -15.56835 -15.37384 -14.89560 -14.60448
-14.54183 -14.37046 -13.98077 -13.67078 -13.62740 -13.28367 -13.10800 -13.03346
-12.72440 -12.62396 -12.44194 -12.26097 -12.22988 -12.12092 -11.86849 -11.44181
-11.31912 -11.22681 -10.97120 -10.78589 -10.75378 -10.66133 -10.12756 -10.08256
-9.60749 -9.46357 -8.95969 -8.80466 -8.35717 -7.71011 -6.27199 -4.30250
0.99241 1.75524 2.43599 2.53445 2.62017 2.82657 2.84180 3.12787
3.19443 3.21353 3.43427 3.50223 3.58822 3.79034 4.10724 4.19486
4.31820 4.42413 4.49567 4.60351 4.71811 4.77455 4.95701 4.99794
5.14003 5.25448 5.30089 5.38790 5.41590 5.51539 5.57738 5.65047
5.71034 5.90650 5.96239 6.18724 6.25047 6.27559 6.35462 6.57422
6.59192 7.06660 7.12455 7.24468 7.37421 7.47245 7.68370 7.80041
8.26729 8.40226 8.81851 9.27165 10.85395
Molecular weight = 345.16amu
Principal moments of inertia in cm(-1)
A = 0.016120 B = 0.002463 C = 0.002203
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1736.604912 B =11363.872831 C =12709.702703
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.149 4.149
2 C -0.006 4.006
3 H 0.119 0.881
4 C 0.221 3.779
5 N -0.432 5.432
6 C 0.112 3.888
7 N -0.552 5.552
8 C 0.516 3.484
9 O -0.502 6.502
10 C 0.510 3.490
11 O -0.496 6.496
12 N -0.594 5.594
13 C 0.252 3.748
14 C -0.280 4.280
15 C 0.053 3.947
16 N -0.314 5.314
17 C 0.231 3.769
18 C -0.537 4.537
19 H 0.086 0.914
20 C 0.077 3.923
21 N -0.886 5.886
22 Si 0.873 3.127
23 H -0.271 1.271
24 H -0.279 1.279
25 H -0.264 1.264
26 N -0.285 5.285
27 C 0.065 3.935
28 C -0.190 4.190
29 C -0.185 4.185
30 H 0.064 0.936
31 H 0.065 0.935
32 H 0.079 0.921
33 H 0.090 0.910
34 H 0.121 0.879
35 H 0.424 0.576
36 H 0.163 0.837
37 H 0.171 0.829
38 H 0.044 0.956
39 H 0.050 0.950
40 H 0.269 0.731
41 H 0.137 0.863
42 H 0.139 0.861
43 H 0.093 0.907
44 H 0.100 0.900
45 H 0.099 0.901
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -24.397 -11.305 4.163 27.210
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.208 4.208
2 C -0.029 4.029
3 H 0.137 0.863
4 C -0.098 4.098
5 N -0.108 5.108
6 C -0.012 4.012
7 N -0.283 5.283
8 C 0.299 3.701
9 O -0.377 6.377
10 C 0.290 3.710
11 O -0.370 6.370
12 N -0.242 5.242
13 C -0.001 4.001
14 C -0.311 4.311
15 C -0.096 4.096
16 N -0.095 5.095
17 C 0.112 3.888
18 C -0.575 4.575
19 H 0.104 0.896
20 C -0.127 4.127
21 N -0.523 5.523
22 Si 0.699 3.301
23 H -0.197 1.197
24 H -0.205 1.205
25 H -0.188 1.188
26 N -0.116 5.116
27 C -0.039 4.039
28 C -0.228 4.228
29 C -0.223 4.223
30 H 0.083 0.917
31 H 0.084 0.916
32 H 0.098 0.902
33 H 0.108 0.892
34 H 0.138 0.862
35 H 0.262 0.738
36 H 0.180 0.820
37 H 0.188 0.812
38 H 0.062 0.938
39 H 0.068 0.932
40 H 0.079 0.921
41 H 0.155 0.845
42 H 0.157 0.843
43 H 0.112 0.888
44 H 0.118 0.882
45 H 0.118 0.882
Dipole moment (debyes) X Y Z Total
from point charges -23.227 -11.145 4.809 26.207
hybrid contribution 0.120 0.526 0.422 0.685
sum -23.107 -10.618 5.231 25.962
Atomic orbital electron populations
1.21910 0.91976 1.03200 1.03666 1.19212 0.96769 1.00340 0.86533
0.86325 1.28709 0.93158 0.93585 0.94313 1.81228 1.08661 1.09528
1.11333 1.22030 1.04090 0.94082 0.81001 1.47010 1.26318 1.28410
1.26602 1.19993 0.84251 0.81316 0.84529 1.90652 1.70041 1.50612
1.26400 1.19933 0.84354 0.80729 0.85937 1.90669 1.72817 1.50654
1.22837 1.41988 1.19982 1.36075 1.26176 1.19000 0.89038 0.98292
0.93759 1.21516 1.00145 1.09694 0.99776 1.22590 0.97811 0.92954
0.96263 1.48710 1.18400 1.28045 1.14381 1.20105 0.80054 0.88597
1.00048 1.21086 1.09472 1.26111 1.00837 0.89582 1.24829 0.95955
0.96357 0.95552 1.69871 1.18167 1.40728 1.23529 0.86912 0.79758
0.81520 0.81941 1.19686 1.20480 1.18848 1.77477 0.99396 1.21409
1.13321 1.21909 0.87960 0.97930 0.96069 1.23918 1.03902 1.04058
0.90873 1.23307 0.95913 0.99362 1.03723 0.91708 0.91637 0.90238
0.89152 0.86166 0.73836 0.81957 0.81193 0.93842 0.93183 0.92111
0.84522 0.84332 0.88817 0.88213 0.88233
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -0.69 8.84 37.16 0.33 -0.36 16
2 C -0.01 -0.04 2.27 -93.41 -0.21 -0.25 16
3 H 0.12 0.94 6.71 -51.93 -0.35 0.59 16
4 C 0.22 2.16 14.65 -20.76 -0.30 1.85 16
5 N -0.43 -5.51 18.54 42.15 0.78 -4.73 16
6 C 0.11 0.72 4.42 -4.05 -0.02 0.70 16
7 N -0.55 -3.97 2.53 -166.65 -0.42 -4.39 16
8 C 0.52 5.15 7.41 -11.63 -0.09 5.06 16
9 O -0.50 -5.71 12.25 5.49 0.07 -5.64 16
10 C 0.51 6.17 7.51 -11.64 -0.09 6.08 16
11 O -0.50 -6.20 8.77 5.47 0.05 -6.15 16
12 N -0.59 -8.56 5.43 -11.58 -0.06 -8.63 16
13 C 0.25 4.62 8.10 -154.54 -1.25 3.37 16
14 C -0.28 -4.87 9.60 -39.82 -0.38 -5.25 16
15 C 0.05 0.95 11.43 -17.24 -0.20 0.75 16
16 N -0.31 -6.75 3.67 -62.56 -0.23 -6.98 16
17 C 0.23 5.28 5.33 -5.20 -0.03 5.25 16
18 C -0.54 -14.82 9.79 -34.44 -0.34 -15.16 16
19 H 0.09 2.70 8.06 -52.49 -0.42 2.27 16
20 C 0.08 2.13 5.47 -17.82 -0.10 2.03 16
21 N -0.89 -26.23 13.96 55.43 0.77 -25.45 16
22 Si 0.87 19.77 27.47 -169.99 -4.67 15.10 16
23 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16
24 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16
25 H -0.26 -5.64 6.54 56.52 0.37 -5.27 16
26 N -0.29 -6.22 12.42 31.41 0.39 -5.83 16
27 C 0.06 0.36 5.59 -67.93 -0.38 -0.02 16
28 C -0.19 -1.33 9.63 -26.73 -0.26 -1.59 16
29 C -0.18 -1.09 9.01 -26.73 -0.24 -1.33 16
30 H 0.06 0.24 8.14 -51.93 -0.42 -0.19 16
31 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16
32 H 0.08 0.35 6.09 -51.93 -0.32 0.03 16
33 H 0.09 0.36 7.92 -51.93 -0.41 -0.05 16
34 H 0.12 1.00 5.68 -51.93 -0.30 0.71 16
35 H 0.42 5.65 8.32 -40.82 -0.34 5.31 16
36 H 0.16 2.61 5.91 -52.49 -0.31 2.30 16
37 H 0.17 2.39 8.06 -52.49 -0.42 1.97 16
38 H 0.04 0.99 7.20 -51.93 -0.37 0.62 16
39 H 0.05 1.03 7.50 -51.93 -0.39 0.64 16
40 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16
41 H 0.14 0.42 8.02 -51.93 -0.42 0.01 16
42 H 0.14 1.35 5.14 -52.42 -0.27 1.08 16
43 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16
44 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16
45 H 0.10 0.75 7.65 -51.93 -0.40 0.36 16
LS Contribution 377.96 15.07 5.70 5.70
Total: -1.00 -33.26 377.96 -6.75 -40.00
By element:
Atomic # 1 Polarization: 11.44 SS G_CDS: -5.57 Total: 5.87 kcal
Atomic # 6 Polarization: 4.69 SS G_CDS: -3.55 Total: 1.14 kcal
Atomic # 7 Polarization: -57.24 SS G_CDS: 1.23 Total: -56.01 kcal
Atomic # 8 Polarization: -11.91 SS G_CDS: 0.12 Total: -11.80 kcal
Atomic # 14 Polarization: 19.77 SS G_CDS: -4.67 Total: 15.10 kcal
Total LS contribution 5.70 Total: 5.70 kcal
Total: -33.26 -6.75 -40.00 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001255525881.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 145.227 kcal
(2) G-P(sol) polarization free energy of solvation -33.257 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.970 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.748 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.004 kcal
(6) G-S(sol) free energy of system = (1) + (5) 105.222 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.96 seconds