Wall clock time and date at job start Wed Apr 1 2020 04:08:22
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 H 1.09001 * 109.46859 * 2 1
4 4 C 1.47200 * 109.46865 * 119.99515 * 2 1 3
5 5 N 2.60795 * 109.46957 * 119.99795 * 2 1 3
6 6 C 1.52997 * 109.47183 * 239.99990 * 2 1 3
7 7 N 1.46496 * 109.47252 * 65.00020 * 6 2 1
8 8 C 1.34778 * 119.99995 * 81.34591 * 7 6 2
9 9 O 1.21359 * 120.00044 * 182.63324 * 8 7 6
10 10 C 1.49347 * 120.00035 * 2.63078 * 8 7 6
11 11 O 1.21384 * 119.99501 * 352.44457 * 10 8 7
12 12 N 1.34771 * 119.99703 * 172.44042 * 10 8 7
13 13 C 1.39935 * 119.99469 * 180.02562 * 12 10 8
14 14 C 1.40461 * 125.98318 * 0.02562 * 13 12 10
15 15 C 1.35215 * 107.86723 * 180.02562 * 14 13 12
16 16 N 1.34991 * 107.87860 * 0.21816 * 15 14 13
17 17 C 1.46496 * 125.97639 * 179.77874 * 16 15 14
18 18 C 1.50697 * 109.47515 * 125.00001 * 17 16 15
19 19 H 1.07995 * 119.99822 * 0.02562 * 18 17 16
20 20 C 1.37875 * 119.99798 * 179.97438 * 18 17 16
21 21 N 1.31517 * 119.99490 * 180.02562 * 20 18 17
22 22 Si 1.86796 * 120.00347 * 0.02562 * 20 18 17
23 23 H 1.48505 * 109.47173 * 89.99787 * 22 20 18
24 24 H 1.48498 * 109.46982 * 209.99834 * 22 20 18
25 25 H 1.48502 * 109.47271 * 329.99760 * 22 20 18
26 26 N 1.31279 * 125.97743 * 179.97438 * 13 12 10
27 27 C 1.46500 * 119.99862 * 261.34409 * 7 6 2
28 28 C 1.53007 * 117.49851 * 196.95435 * 27 7 6
29 29 C 1.52998 * 59.99910 * 252.51147 * 28 27 7
30 30 H 1.08992 * 109.47403 * 179.97438 * 1 2 3
31 31 H 1.09001 * 109.47416 * 300.00253 * 1 2 3
32 32 H 1.09002 * 109.46981 * 60.00037 * 1 2 3
33 33 H 1.09004 * 109.47012 * 305.00153 * 6 2 1
34 34 H 1.09003 * 109.47046 * 185.00346 * 6 2 1
35 35 H 0.96996 * 120.00187 * 359.97438 * 12 10 8
36 36 H 1.07993 * 126.06618 * 359.97046 * 14 13 12
37 37 H 1.07999 * 126.06348 * 179.97438 * 15 14 13
38 38 H 1.09002 * 109.46826 * 245.00561 * 17 16 15
39 39 H 1.09003 * 109.46438 * 5.00020 * 17 16 15
40 40 H 0.97005 * 119.99965 * 180.02562 * 21 20 18
41 41 H 1.08999 * 115.55217 * 342.65693 * 27 7 6
42 42 H 1.09008 * 117.49472 * 0.02562 * 28 27 7
43 43 H 1.08995 * 117.49904 * 145.01744 * 28 27 7
44 44 H 1.08997 * 117.49859 * 252.50975 * 29 28 27
45 45 H 1.09001 * 117.52093 * 107.48127 * 29 28 27
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0206 -0.6938 1.2020
5 7 2.3992 -1.2293 2.1295
6 6 2.0400 -0.7212 -1.2492
7 7 1.6525 0.0353 -2.4423
8 6 2.3817 1.0999 -2.8316
9 8 2.0338 1.7553 -3.7919
10 6 3.6178 1.4730 -2.0811
11 8 3.8922 0.9059 -1.0435
12 7 4.4286 2.4391 -2.5560
13 6 5.5871 2.7883 -1.8530
14 6 6.0242 2.2167 -0.6467
15 6 7.1789 2.8254 -0.2937
16 7 7.4639 3.7509 -1.2342
17 6 8.6262 4.6426 -1.2398
18 6 9.3741 4.4849 -2.5385
19 1 9.0189 3.7903 -3.2853
20 6 10.5112 5.2283 -2.7737
21 7 11.1636 5.0910 -3.9074
22 14 11.1252 6.4302 -1.4824
23 1 12.0680 5.7362 -0.5686
24 1 11.8225 7.5593 -2.1488
25 1 9.9732 6.9507 -0.7030
26 7 6.4561 3.7067 -2.2062
27 6 0.4723 -0.3653 -3.2124
28 6 0.3363 0.1844 -4.6338
29 6 -0.5698 0.7120 -3.5196
30 1 -0.3634 -1.0276 -0.0005
31 1 -0.3634 0.5139 0.8900
32 1 -0.3633 0.5138 -0.8900
33 1 1.6053 -1.7198 -1.2951
34 1 3.1263 -0.7995 -1.2055
35 1 4.2095 2.8918 -3.3854
36 1 5.5260 1.4313 -0.0980
37 1 7.7668 2.6119 0.5868
38 1 8.2925 5.6750 -1.1356
39 1 9.2836 4.3875 -0.4086
40 1 11.9639 5.6137 -4.0728
41 1 0.1110 -1.3768 -3.0269
42 1 1.1251 0.8437 -4.9961
43 1 -0.1145 -0.4656 -5.3837
44 1 -1.6167 0.4091 -3.5365
45 1 -0.3776 1.7186 -3.1484
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001255525881.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:08:22
Heat of formation + Delta-G solvation = 83.230167 kcal
Electronic energy + Delta-G solvation = -29804.780608 eV
Core-core repulsion = 25633.314094 eV
Total energy + Delta-G solvation = -4171.466514 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 345.159 amu
Computer time = 2.63 seconds
Orbital eigenvalues (eV)
-42.62611 -41.88766 -40.07186 -38.71951 -37.49973 -36.50810 -35.75637 -35.18786
-33.23888 -33.13700 -31.04912 -29.25626 -27.66747 -26.88870 -24.79536 -24.12374
-23.48833 -23.15131 -22.30841 -21.37013 -20.50749 -19.12493 -18.95506 -18.55180
-18.22072 -17.55826 -17.21635 -17.06075 -16.72038 -16.28573 -16.17599 -15.66917
-15.59984 -15.14169 -15.09938 -14.87194 -14.63496 -14.39944 -14.31027 -13.97088
-13.89401 -13.74560 -13.66035 -13.34249 -13.04986 -12.78615 -12.70311 -12.55144
-12.43792 -12.40205 -11.99213 -11.85472 -11.80707 -11.68116 -11.58417 -11.44246
-11.16975 -10.87490 -10.34801 -9.83893 -9.59804 -9.18342 -8.38013 -6.48516
0.04471 0.82067 1.11912 1.36231 1.38957 1.48503 1.60505 1.73166
1.85031 1.87130 2.25170 2.28577 2.34219 2.93602 2.95134 3.07872
3.17643 3.78987 3.87056 3.90008 4.00288 4.15660 4.16750 4.23314
4.29757 4.47076 4.55179 4.64771 4.71553 4.78603 4.83609 4.84978
4.94798 4.98502 5.01594 5.15205 5.16050 5.23548 5.35358 5.42392
5.65838 5.77913 5.82221 5.97739 6.01282 6.37562 6.51009 6.57799
6.62274 6.78727 6.94915 7.14502 8.79114
Molecular weight = 345.16amu
Principal moments of inertia in cm(-1)
A = 0.016120 B = 0.002463 C = 0.002203
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1736.604912 B =11363.872831 C =12709.702703
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.144 4.144
2 C -0.002 4.002
3 H 0.108 0.892
4 C 0.246 3.754
5 N -0.486 5.486
6 C 0.110 3.890
7 N -0.538 5.538
8 C 0.520 3.480
9 O -0.518 6.518
10 C 0.512 3.488
11 O -0.496 6.496
12 N -0.601 5.601
13 C 0.262 3.738
14 C -0.284 4.284
15 C 0.060 3.940
16 N -0.341 5.341
17 C 0.238 3.762
18 C -0.548 4.548
19 H 0.027 0.973
20 C 0.014 3.986
21 N -0.942 5.942
22 Si 0.955 3.045
23 H -0.253 1.253
24 H -0.282 1.282
25 H -0.238 1.238
26 N -0.344 5.344
27 C 0.071 3.929
28 C -0.208 4.208
29 C -0.177 4.177
30 H 0.083 0.917
31 H 0.064 0.936
32 H 0.086 0.914
33 H 0.127 0.873
34 H 0.102 0.898
35 H 0.426 0.574
36 H 0.178 0.822
37 H 0.211 0.789
38 H 0.046 0.954
39 H 0.083 0.917
40 H 0.272 0.728
41 H 0.177 0.823
42 H 0.108 0.892
43 H 0.110 0.890
44 H 0.125 0.875
45 H 0.079 0.921
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -26.474 -12.297 6.372 29.878
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.202 4.202
2 C -0.024 4.024
3 H 0.126 0.874
4 C -0.071 4.071
5 N -0.163 5.163
6 C -0.013 4.013
7 N -0.268 5.268
8 C 0.302 3.698
9 O -0.394 6.394
10 C 0.294 3.706
11 O -0.369 6.369
12 N -0.251 5.251
13 C 0.008 3.992
14 C -0.314 4.314
15 C -0.088 4.088
16 N -0.123 5.123
17 C 0.119 3.881
18 C -0.586 4.586
19 H 0.045 0.955
20 C -0.185 4.185
21 N -0.581 5.581
22 Si 0.776 3.224
23 H -0.177 1.177
24 H -0.207 1.207
25 H -0.162 1.162
26 N -0.174 5.174
27 C -0.031 4.031
28 C -0.245 4.245
29 C -0.215 4.215
30 H 0.102 0.898
31 H 0.083 0.917
32 H 0.105 0.895
33 H 0.145 0.855
34 H 0.120 0.880
35 H 0.264 0.736
36 H 0.195 0.805
37 H 0.228 0.772
38 H 0.064 0.936
39 H 0.101 0.899
40 H 0.081 0.919
41 H 0.194 0.806
42 H 0.126 0.874
43 H 0.129 0.871
44 H 0.143 0.857
45 H 0.098 0.902
Dipole moment (debyes) X Y Z Total
from point charges -25.363 -12.188 7.039 29.006
hybrid contribution 0.616 0.688 -0.368 0.994
sum -24.747 -11.500 6.670 28.092
Atomic orbital electron populations
1.21911 0.89697 1.04568 1.04021 1.19322 0.98461 0.99246 0.85411
0.87433 1.29151 0.91644 0.92342 0.94012 1.81255 1.10549 1.11396
1.13088 1.22092 1.03359 0.95527 0.80297 1.47049 1.26160 1.27010
1.26571 1.19598 0.83763 0.82270 0.84214 1.90692 1.70279 1.51482
1.26996 1.20467 0.84585 0.79673 0.85898 1.90661 1.73029 1.50275
1.22963 1.42163 1.19479 1.37055 1.26367 1.19342 0.89128 0.96880
0.93896 1.21763 1.00267 1.09936 0.99479 1.23307 0.97949 0.91145
0.96376 1.48553 1.18548 1.29528 1.15644 1.19912 0.80603 0.89405
0.98211 1.21233 1.10296 1.25077 1.01964 0.95491 1.25924 0.95855
0.98491 0.98191 1.70054 1.19101 1.42499 1.26461 0.85624 0.79912
0.78188 0.78706 1.17711 1.20742 1.16154 1.77384 1.00918 1.24005
1.15134 1.22327 0.86697 0.99531 0.94574 1.23835 1.03931 1.04639
0.92076 1.23321 0.97140 0.98507 1.02574 0.89836 0.91668 0.89542
0.85525 0.88025 0.73602 0.80500 0.77229 0.93594 0.89891 0.91886
0.80631 0.87433 0.87143 0.85680 0.90192
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -0.85 8.84 71.98 0.64 -0.22 16
2 C 0.00 -0.02 2.27 -12.60 -0.03 -0.05 16
3 H 0.11 1.53 6.71 -2.39 -0.02 1.52 16
4 C 0.25 4.39 14.65 89.44 1.31 5.70 16
5 N -0.49 -11.94 18.54 20.01 0.37 -11.57 16
6 C 0.11 1.11 4.42 86.38 0.38 1.49 16
7 N -0.54 -6.49 2.53 -799.51 -2.02 -8.51 16
8 C 0.52 10.00 7.41 87.24 0.65 10.65 16
9 O -0.52 -11.87 12.25 -3.28 -0.04 -11.91 16
10 C 0.51 12.28 7.51 87.24 0.66 12.94 16
11 O -0.50 -12.01 8.77 -3.35 -0.03 -12.04 16
12 N -0.60 -17.84 5.43 -308.89 -1.68 -19.52 16
13 C 0.26 9.80 8.10 133.40 1.08 10.88 16
14 C -0.28 -9.68 9.60 22.11 0.21 -9.47 16
15 C 0.06 2.08 11.43 83.51 0.95 3.03 16
16 N -0.34 -14.76 3.67 -351.85 -1.29 -16.05 16
17 C 0.24 10.81 5.33 85.63 0.46 11.27 16
18 C -0.55 -31.35 9.79 25.60 0.25 -31.10 16
19 H 0.03 1.81 8.06 -2.91 -0.02 1.78 16
20 C 0.01 0.80 5.47 84.65 0.46 1.26 16
21 N -0.94 -58.01 13.96 21.45 0.30 -57.71 16
22 Si 0.95 40.40 27.47 68.60 1.88 42.28 16
23 H -0.25 -9.93 7.11 99.48 0.71 -9.22 16
24 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16
25 H -0.24 -9.05 6.54 99.48 0.65 -8.40 16
26 N -0.34 -15.58 12.42 -54.53 -0.68 -16.25 16
27 C 0.07 0.55 5.59 44.99 0.25 0.81 16
28 C -0.21 -2.53 9.63 30.60 0.29 -2.23 16
29 C -0.18 -1.62 9.01 30.59 0.28 -1.34 16
30 H 0.08 0.23 8.14 -2.39 -0.02 0.21 16
31 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16
32 H 0.09 0.44 6.09 -2.39 -0.01 0.43 16
33 H 0.13 0.44 7.92 -2.38 -0.02 0.42 16
34 H 0.10 1.50 5.68 -2.39 -0.01 1.49 16
35 H 0.43 12.05 8.32 -92.71 -0.77 11.27 16
36 H 0.18 5.44 5.91 -2.91 -0.02 5.43 16
37 H 0.21 5.24 8.06 -2.91 -0.02 5.22 16
38 H 0.05 2.05 7.20 -2.39 -0.02 2.03 16
39 H 0.08 3.21 7.50 -2.39 -0.02 3.19 16
40 H 0.27 15.43 8.31 -92.70 -0.77 14.66 16
41 H 0.18 0.10 8.02 -2.39 -0.02 0.08 16
42 H 0.11 2.09 5.14 -10.25 -0.05 2.04 16
43 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16
44 H 0.13 0.54 8.14 -2.39 -0.02 0.52 16
45 H 0.08 1.09 7.65 -2.39 -0.02 1.07 16
Total: -1.00 -78.66 377.96 4.85 -73.81
By element:
Atomic # 1 Polarization: 23.65 SS G_CDS: 0.19 Total: 23.84 kcal
Atomic # 6 Polarization: 5.79 SS G_CDS: 7.84 Total: 13.63 kcal
Atomic # 7 Polarization: -124.62 SS G_CDS: -5.00 Total: -129.62 kcal
Atomic # 8 Polarization: -23.88 SS G_CDS: -0.07 Total: -23.95 kcal
Atomic # 14 Polarization: 40.40 SS G_CDS: 1.88 Total: 42.28 kcal
Total: -78.66 4.85 -73.81 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001255525881.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 157.042 kcal
(2) G-P(sol) polarization free energy of solvation -78.664 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.379 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.852 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.812 kcal
(6) G-S(sol) free energy of system = (1) + (5) 83.230 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 2.63 seconds