Wall clock time and date at job start Wed Apr 1 2020 03:16:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.47342 * 2 1 4 4 N 1.46504 * 109.47073 * 240.00320 * 2 1 3 5 5 C 1.34778 * 120.00151 * 84.99922 * 4 2 1 6 6 O 1.21355 * 119.99853 * 0.02562 * 5 4 2 7 7 C 1.49443 * 119.99997 * 180.02562 * 5 4 2 8 8 O 1.21346 * 120.00089 * 359.97438 * 7 5 4 9 9 N 1.34778 * 119.99997 * 179.97438 * 7 5 4 10 10 C 1.46504 * 120.00151 * 179.97438 * 9 7 5 11 11 C 1.52999 * 109.46796 * 179.97438 * 10 9 7 12 12 C 1.53005 * 109.46778 * 180.02562 * 11 10 9 13 13 C 1.50700 * 109.47115 * 180.02562 * 12 11 10 14 14 H 1.07998 * 119.99847 * 359.97438 * 13 12 11 15 15 C 1.37877 * 119.99901 * 180.02562 * 13 12 11 16 16 N 1.31515 * 119.99891 * 179.97438 * 15 13 12 17 17 Si 1.86797 * 120.00133 * 359.97438 * 15 13 12 18 18 H 1.48497 * 109.47344 * 89.99930 * 17 15 13 19 19 H 1.48505 * 109.47407 * 210.00361 * 17 15 13 20 20 H 1.48504 * 109.47009 * 330.00161 * 17 15 13 21 21 C 1.50696 * 109.47247 * 120.00120 * 2 1 3 22 22 N 1.30810 * 126.24556 * 75.02560 * 21 2 1 23 23 N 1.28684 * 110.28940 * 179.97438 * 22 21 2 24 24 C 1.32303 * 109.48335 * 0.02562 * 23 22 21 25 25 C 1.40823 * 133.46587 * 180.02562 * 24 23 22 26 26 C 1.36019 * 119.22601 * 179.97438 * 25 24 23 27 27 C 1.40548 * 119.74773 * 359.97438 * 26 25 24 28 28 C 1.34952 * 120.36596 * 359.97438 * 27 26 25 29 29 N 1.36061 * 126.25100 * 254.99470 * 21 2 1 30 30 H 1.08993 * 109.47131 * 59.99486 * 1 2 3 31 31 H 1.08991 * 109.46981 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.46810 * 299.99425 * 1 2 3 33 33 H 0.97003 * 120.00029 * 265.00099 * 4 2 1 34 34 H 0.97003 * 119.99819 * 359.97438 * 9 7 5 35 35 H 1.09000 * 109.46829 * 300.00160 * 10 9 7 36 36 H 1.09000 * 109.46523 * 59.99966 * 10 9 7 37 37 H 1.09000 * 109.47598 * 299.99733 * 11 10 9 38 38 H 1.09000 * 109.47576 * 60.00655 * 11 10 9 39 39 H 1.09000 * 109.46738 * 300.00137 * 12 11 10 40 40 H 1.08996 * 109.47081 * 59.99789 * 12 11 10 41 41 H 0.97000 * 119.99835 * 179.97438 * 16 15 13 42 42 H 1.07997 * 120.38847 * 359.97438 * 25 24 23 43 43 H 1.07997 * 120.12778 * 179.97438 * 26 25 24 44 44 H 1.08003 * 119.81734 * 179.97438 * 27 26 25 45 45 H 1.08002 * 119.74253 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1470 -0.0182 -2.3572 6 8 1.8588 1.1594 -2.4115 7 6 2.6446 -0.7228 -3.5776 8 8 2.9332 -1.9001 -3.5231 9 7 2.7728 -0.0505 -4.7386 10 6 3.2612 -0.7411 -5.9349 11 6 3.3114 0.2419 -7.1063 12 6 3.8208 -0.4795 -8.3558 13 6 3.8709 0.4887 -9.5095 14 1 3.5691 1.5157 -9.3660 15 6 4.3009 0.0632 -10.7484 16 7 4.3441 0.9080 -11.7554 17 14 4.8221 -1.7133 -10.9968 18 1 3.6450 -2.5224 -11.4028 19 1 5.8593 -1.7813 -12.0574 20 1 5.3765 -2.2486 -9.7273 21 6 2.0323 -0.7104 1.2304 22 7 2.0332 -2.0030 1.4310 23 7 2.5323 -2.2752 2.5854 24 6 2.8809 -1.1519 3.1913 25 6 3.4619 -0.8657 4.4418 26 6 3.7032 0.4292 4.7813 27 6 3.3717 1.4588 3.8838 28 6 2.8164 1.1693 2.6884 29 7 2.5684 -0.1245 2.3352 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8901 33 1 2.2490 -1.6318 -1.1527 34 1 2.5418 0.8906 -4.7822 35 1 4.2606 -1.1328 -5.7457 36 1 2.5888 -1.5634 -6.1795 37 1 2.3118 0.6333 -7.2954 38 1 3.9835 1.0644 -6.8619 39 1 4.8203 -0.8712 -8.1670 40 1 3.1484 -1.3019 -8.6000 41 1 4.6470 0.6087 -12.6269 42 1 3.7128 -1.6649 5.1234 43 1 4.1478 0.6653 5.7367 44 1 3.5625 2.4873 4.1523 45 1 2.5661 1.9683 2.0062 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001257124645.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:16:43 Heat of formation + Delta-G solvation = 33.408695 kcal Electronic energy + Delta-G solvation = -28371.523970 eV Core-core repulsion = 24197.897035 eV Total energy + Delta-G solvation = -4173.626935 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 2.88 seconds Orbital eigenvalues (eV) -44.15707 -40.81884 -38.93470 -38.68778 -36.52905 -35.69041 -34.46154 -33.35894 -31.95870 -31.49758 -31.36553 -29.36298 -27.70613 -25.59535 -24.88566 -24.26424 -23.84492 -22.56256 -21.29944 -20.75841 -20.30257 -19.02345 -18.37172 -17.72426 -17.22796 -17.01728 -16.75833 -16.52622 -16.17710 -15.86320 -15.51623 -15.36489 -14.97650 -14.59108 -14.20706 -14.03943 -13.76822 -13.41337 -13.28427 -13.09517 -12.91158 -12.73311 -12.62013 -12.15534 -12.10590 -12.04755 -11.98001 -11.82527 -11.80399 -11.12789 -11.06847 -10.92602 -10.23164 -10.18233 -10.00218 -9.80643 -9.79925 -9.59224 -9.24928 -9.09814 -8.71514 -8.56778 -6.07348 -4.06384 -0.03106 0.42079 1.25586 1.52305 1.99439 2.32026 2.70843 3.07073 3.28945 3.30506 3.38230 3.41846 3.49617 3.63208 3.80144 4.07528 4.11752 4.26079 4.33545 4.43231 4.50731 4.51986 4.85678 4.95572 5.11935 5.21733 5.26492 5.28839 5.37559 5.41286 5.42147 5.55638 5.63130 5.68932 5.77341 5.91972 6.13026 6.18512 6.37557 6.51054 6.72363 6.75233 7.19169 7.25778 7.32643 7.54676 7.73994 7.93034 7.96101 8.48862 8.96551 9.54563 11.05813 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.024530 B = 0.001632 C = 0.001614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.193031 B =17155.215799 C =17345.108275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.242 3.758 3 H 0.108 0.892 4 N -0.694 5.694 5 C 0.515 3.485 6 O -0.518 6.518 7 C 0.502 3.498 8 O -0.520 6.520 9 N -0.690 5.690 10 C 0.111 3.889 11 C -0.115 4.115 12 C -0.011 4.011 13 C -0.523 4.523 14 H 0.072 0.928 15 C 0.067 3.933 16 N -0.902 5.902 17 Si 0.880 3.120 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.264 1.264 21 C 0.127 3.873 22 N -0.230 5.230 23 N -0.283 5.283 24 C 0.196 3.804 25 C -0.078 4.078 26 C -0.086 4.086 27 C -0.132 4.132 28 C 0.062 3.938 29 N -0.382 5.382 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.423 0.577 34 H 0.413 0.587 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.019 0.981 40 H 0.015 0.985 41 H 0.263 0.737 42 H 0.160 0.840 43 H 0.150 0.850 44 H 0.159 0.841 45 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.639 2.487 37.771 38.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.134 3.866 3 H 0.125 0.875 4 N -0.350 5.350 5 C 0.297 3.703 6 O -0.393 6.393 7 C 0.281 3.719 8 O -0.396 6.396 9 N -0.342 5.342 10 C -0.011 4.011 11 C -0.153 4.153 12 C -0.049 4.049 13 C -0.561 4.561 14 H 0.091 0.909 15 C -0.134 4.134 16 N -0.541 5.541 17 Si 0.707 3.293 18 H -0.202 1.202 19 H -0.214 1.214 20 H -0.189 1.189 21 C -0.136 4.136 22 N -0.070 5.070 23 N -0.129 5.129 24 C -0.053 4.053 25 C -0.099 4.099 26 C -0.111 4.111 27 C -0.154 4.154 28 C -0.060 4.060 29 N -0.062 5.062 30 H 0.100 0.900 31 H 0.093 0.907 32 H 0.089 0.911 33 H 0.261 0.739 34 H 0.249 0.751 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.038 0.962 40 H 0.034 0.966 41 H 0.073 0.927 42 H 0.177 0.823 43 H 0.168 0.832 44 H 0.177 0.823 45 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -4.863 0.900 37.153 37.480 hybrid contribution 0.539 0.507 0.012 0.740 sum -4.324 1.407 37.165 37.442 Atomic orbital electron populations 1.22208 0.91873 1.04208 1.03593 1.19006 0.95185 0.95032 0.77345 0.87454 1.45723 1.65896 1.15662 1.07744 1.20380 0.78478 0.86898 0.84594 1.90766 1.48450 1.15226 1.84838 1.19845 0.80362 0.87135 0.84519 1.90792 1.48868 1.15145 1.84812 1.46002 1.64023 1.15113 1.09093 1.21871 0.99729 0.96477 0.83026 1.21744 1.02039 0.97732 0.93782 1.19507 0.96128 0.96454 0.92779 1.21087 1.44491 0.97675 0.92871 0.90941 1.25026 0.94985 0.97505 0.95931 1.69912 1.47694 1.34988 1.01490 0.86778 0.78770 0.85538 0.78214 1.20230 1.21355 1.18902 1.24641 1.06449 0.90721 0.91755 1.74206 1.13391 1.09759 1.09678 1.75042 1.16781 1.19702 1.01358 1.22436 1.03361 0.84573 0.94890 1.20354 0.98908 0.98441 0.92193 1.21260 0.97886 0.91537 1.00374 1.21025 1.00098 1.01658 0.92580 1.21780 1.01045 0.84191 0.98974 1.43614 1.39993 1.08120 1.14486 0.90029 0.90682 0.91121 0.73868 0.75139 0.91053 0.90988 0.91779 0.91801 0.96232 0.96632 0.92678 0.82280 0.83188 0.82319 0.81034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.16 9.47 37.16 0.35 -0.81 16 2 C 0.24 2.04 3.05 -69.08 -0.21 1.83 16 3 H 0.11 0.78 7.15 -51.93 -0.37 0.41 16 4 N -0.69 -7.28 5.06 -55.36 -0.28 -7.57 16 5 C 0.52 6.28 7.85 -11.59 -0.09 6.19 16 6 O -0.52 -6.75 16.14 5.49 0.09 -6.66 16 7 C 0.50 7.14 7.89 -11.59 -0.09 7.05 16 8 O -0.52 -8.65 16.48 5.50 0.09 -8.56 16 9 N -0.69 -9.63 5.55 -60.73 -0.34 -9.97 16 10 C 0.11 1.77 5.67 -4.04 -0.02 1.74 16 11 C -0.11 -2.10 5.27 -26.73 -0.14 -2.24 16 12 C -0.01 -0.25 4.04 -27.88 -0.11 -0.36 16 13 C -0.52 -14.64 9.66 -34.44 -0.33 -14.97 16 14 H 0.07 2.17 7.99 -52.49 -0.42 1.75 16 15 C 0.07 1.93 5.47 -17.82 -0.10 1.84 16 16 N -0.90 -27.61 13.96 55.43 0.77 -26.84 16 17 Si 0.88 21.59 27.47 -169.99 -4.67 16.92 16 18 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 19 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 20 H -0.26 -6.23 6.54 56.52 0.37 -5.86 16 21 C 0.13 1.22 6.93 -154.22 -1.07 0.16 16 22 N -0.23 -2.82 11.89 32.94 0.39 -2.43 16 23 N -0.28 -3.48 12.31 31.14 0.38 -3.10 16 24 C 0.20 1.80 7.92 -156.06 -1.24 0.57 16 25 C -0.08 -0.41 10.11 -39.40 -0.40 -0.81 16 26 C -0.09 -0.23 10.07 -39.51 -0.40 -0.63 16 27 C -0.13 -0.31 9.98 -39.88 -0.40 -0.71 16 28 C 0.06 0.27 10.80 -16.69 -0.18 0.09 16 29 N -0.38 -3.06 2.95 -59.73 -0.18 -3.24 16 30 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.42 4.74 7.83 -40.82 -0.32 4.42 16 34 H 0.41 5.17 7.94 -40.82 -0.32 4.84 16 35 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 37 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 38 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 39 H 0.02 0.45 7.20 -51.93 -0.37 0.07 16 40 H 0.02 0.35 7.57 -51.93 -0.39 -0.04 16 41 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 42 H 0.16 0.52 8.06 -52.49 -0.42 0.10 16 43 H 0.15 -0.05 8.06 -52.49 -0.42 -0.48 16 44 H 0.16 -0.11 8.06 -52.48 -0.42 -0.53 16 45 H 0.17 0.29 7.76 -52.49 -0.41 -0.12 16 LS Contribution 389.65 15.07 5.87 5.87 Total: -1.00 -36.18 389.65 -8.29 -44.47 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -6.00 Total: 2.16 kcal Atomic # 6 Polarization: 3.36 SS G_CDS: -4.43 Total: -1.07 kcal Atomic # 7 Polarization: -53.89 SS G_CDS: 0.76 Total: -53.14 kcal Atomic # 8 Polarization: -15.40 SS G_CDS: 0.18 Total: -15.22 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.67 Total: 16.92 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -36.18 -8.29 -44.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001257124645.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.881 kcal (2) G-P(sol) polarization free energy of solvation -36.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.473 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.88 seconds