Wall clock time and date at job start Wed Apr 1 2020 03:16:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.47342 * 2 1 4 4 N 1.46504 * 109.47073 * 240.00320 * 2 1 3 5 5 C 1.34778 * 120.00151 * 84.99922 * 4 2 1 6 6 O 1.21355 * 119.99853 * 0.02562 * 5 4 2 7 7 C 1.49443 * 119.99997 * 180.02562 * 5 4 2 8 8 O 1.21346 * 120.00089 * 359.97438 * 7 5 4 9 9 N 1.34778 * 119.99997 * 179.97438 * 7 5 4 10 10 C 1.46504 * 120.00151 * 179.97438 * 9 7 5 11 11 C 1.52999 * 109.46796 * 179.97438 * 10 9 7 12 12 C 1.53005 * 109.46778 * 180.02562 * 11 10 9 13 13 C 1.50700 * 109.47115 * 180.02562 * 12 11 10 14 14 H 1.07998 * 119.99847 * 359.97438 * 13 12 11 15 15 C 1.37877 * 119.99901 * 180.02562 * 13 12 11 16 16 N 1.31515 * 119.99891 * 179.97438 * 15 13 12 17 17 Si 1.86797 * 120.00133 * 359.97438 * 15 13 12 18 18 H 1.48497 * 109.47344 * 89.99930 * 17 15 13 19 19 H 1.48505 * 109.47407 * 210.00361 * 17 15 13 20 20 H 1.48504 * 109.47009 * 330.00161 * 17 15 13 21 21 C 1.50696 * 109.47247 * 120.00120 * 2 1 3 22 22 N 1.30810 * 126.24556 * 75.02560 * 21 2 1 23 23 N 1.28684 * 110.28940 * 179.97438 * 22 21 2 24 24 C 1.32303 * 109.48335 * 0.02562 * 23 22 21 25 25 C 1.40823 * 133.46587 * 180.02562 * 24 23 22 26 26 C 1.36019 * 119.22601 * 179.97438 * 25 24 23 27 27 C 1.40548 * 119.74773 * 359.97438 * 26 25 24 28 28 C 1.34952 * 120.36596 * 359.97438 * 27 26 25 29 29 N 1.36061 * 126.25100 * 254.99470 * 21 2 1 30 30 H 1.08993 * 109.47131 * 59.99486 * 1 2 3 31 31 H 1.08991 * 109.46981 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.46810 * 299.99425 * 1 2 3 33 33 H 0.97003 * 120.00029 * 265.00099 * 4 2 1 34 34 H 0.97003 * 119.99819 * 359.97438 * 9 7 5 35 35 H 1.09000 * 109.46829 * 300.00160 * 10 9 7 36 36 H 1.09000 * 109.46523 * 59.99966 * 10 9 7 37 37 H 1.09000 * 109.47598 * 299.99733 * 11 10 9 38 38 H 1.09000 * 109.47576 * 60.00655 * 11 10 9 39 39 H 1.09000 * 109.46738 * 300.00137 * 12 11 10 40 40 H 1.08996 * 109.47081 * 59.99789 * 12 11 10 41 41 H 0.97000 * 119.99835 * 179.97438 * 16 15 13 42 42 H 1.07997 * 120.38847 * 359.97438 * 25 24 23 43 43 H 1.07997 * 120.12778 * 179.97438 * 26 25 24 44 44 H 1.08003 * 119.81734 * 179.97438 * 27 26 25 45 45 H 1.08002 * 119.74253 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1470 -0.0182 -2.3572 6 8 1.8588 1.1594 -2.4115 7 6 2.6446 -0.7228 -3.5776 8 8 2.9332 -1.9001 -3.5231 9 7 2.7728 -0.0505 -4.7386 10 6 3.2612 -0.7411 -5.9349 11 6 3.3114 0.2419 -7.1063 12 6 3.8208 -0.4795 -8.3558 13 6 3.8709 0.4887 -9.5095 14 1 3.5691 1.5157 -9.3660 15 6 4.3009 0.0632 -10.7484 16 7 4.3441 0.9080 -11.7554 17 14 4.8221 -1.7133 -10.9968 18 1 3.6450 -2.5224 -11.4028 19 1 5.8593 -1.7813 -12.0574 20 1 5.3765 -2.2486 -9.7273 21 6 2.0323 -0.7104 1.2304 22 7 2.0332 -2.0030 1.4310 23 7 2.5323 -2.2752 2.5854 24 6 2.8809 -1.1519 3.1913 25 6 3.4619 -0.8657 4.4418 26 6 3.7032 0.4292 4.7813 27 6 3.3717 1.4588 3.8838 28 6 2.8164 1.1693 2.6884 29 7 2.5684 -0.1245 2.3352 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8901 33 1 2.2490 -1.6318 -1.1527 34 1 2.5418 0.8906 -4.7822 35 1 4.2606 -1.1328 -5.7457 36 1 2.5888 -1.5634 -6.1795 37 1 2.3118 0.6333 -7.2954 38 1 3.9835 1.0644 -6.8619 39 1 4.8203 -0.8712 -8.1670 40 1 3.1484 -1.3019 -8.6000 41 1 4.6470 0.6087 -12.6269 42 1 3.7128 -1.6649 5.1234 43 1 4.1478 0.6653 5.7367 44 1 3.5625 2.4873 4.1523 45 1 2.5661 1.9683 2.0062 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001257124645.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:16:40 Heat of formation + Delta-G solvation = 7.527801 kcal Electronic energy + Delta-G solvation = -28372.646250 eV Core-core repulsion = 24197.897035 eV Total energy + Delta-G solvation = -4174.749215 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -44.72545 -41.85158 -39.90675 -39.22284 -37.45563 -36.95959 -35.24020 -34.91408 -33.31575 -32.58183 -31.89958 -29.91681 -29.34167 -26.63444 -25.34072 -25.21316 -24.37077 -23.90480 -22.31310 -21.96136 -21.38530 -19.99190 -19.05812 -18.86959 -18.25949 -17.96475 -17.73149 -17.28958 -16.98644 -16.78049 -16.41113 -16.19443 -16.09085 -15.79782 -15.29743 -15.16273 -14.90396 -14.77766 -14.23629 -13.82351 -13.68185 -13.62683 -13.54232 -13.42216 -13.16814 -12.92281 -12.74875 -12.74173 -12.70018 -12.52223 -12.23850 -11.91459 -11.78624 -11.70874 -11.60695 -11.33334 -10.85767 -10.75320 -10.70834 -10.61004 -10.31334 -9.19072 -8.28450 -6.32567 -0.35621 -0.04894 0.21199 0.89779 1.30983 1.38251 1.39792 1.51330 1.54856 2.01610 2.32192 2.37232 2.49266 2.73700 3.07443 3.20918 3.30851 3.42336 3.54238 3.81438 3.88388 4.01667 4.02302 4.08430 4.17392 4.41058 4.47642 4.59366 4.66080 4.67017 4.80556 4.86264 4.87214 4.93778 5.00458 5.02384 5.10046 5.14888 5.16216 5.38665 5.46568 5.55622 5.64805 5.73861 5.80997 6.20043 6.28173 6.54982 6.75707 6.83049 7.31515 7.32196 8.87967 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.024530 B = 0.001632 C = 0.001614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.193031 B =17155.215799 C =17345.108275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.244 3.756 3 H 0.124 0.876 4 N -0.688 5.688 5 C 0.525 3.475 6 O -0.525 6.525 7 C 0.503 3.497 8 O -0.546 6.546 9 N -0.684 5.684 10 C 0.123 3.877 11 C -0.104 4.104 12 C -0.012 4.012 13 C -0.532 4.532 14 H 0.036 0.964 15 C 0.004 3.996 16 N -0.951 5.951 17 Si 0.948 3.052 18 H -0.268 1.268 19 H -0.286 1.286 20 H -0.245 1.245 21 C 0.119 3.881 22 N -0.267 5.267 23 N -0.340 5.340 24 C 0.188 3.812 25 C -0.109 4.109 26 C -0.058 4.058 27 C -0.119 4.119 28 C 0.040 3.960 29 N -0.384 5.384 30 H 0.079 0.921 31 H 0.063 0.937 32 H 0.089 0.911 33 H 0.419 0.581 34 H 0.421 0.579 35 H 0.071 0.929 36 H 0.073 0.927 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.024 0.976 40 H 0.023 0.977 41 H 0.266 0.734 42 H 0.171 0.829 43 H 0.190 0.810 44 H 0.201 0.799 45 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.113 3.405 40.617 40.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.138 3.862 3 H 0.142 0.858 4 N -0.342 5.342 5 C 0.305 3.695 6 O -0.401 6.401 7 C 0.283 3.717 8 O -0.424 6.424 9 N -0.337 5.337 10 C 0.000 4.000 11 C -0.142 4.142 12 C -0.050 4.050 13 C -0.570 4.570 14 H 0.055 0.945 15 C -0.193 4.193 16 N -0.591 5.591 17 Si 0.772 3.228 18 H -0.193 1.193 19 H -0.212 1.212 20 H -0.169 1.169 21 C -0.145 4.145 22 N -0.107 5.107 23 N -0.186 5.186 24 C -0.060 4.060 25 C -0.130 4.130 26 C -0.082 4.082 27 C -0.139 4.139 28 C -0.082 4.082 29 N -0.063 5.063 30 H 0.098 0.902 31 H 0.082 0.918 32 H 0.108 0.892 33 H 0.257 0.743 34 H 0.258 0.742 35 H 0.089 0.911 36 H 0.091 0.909 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.042 0.958 40 H 0.041 0.959 41 H 0.075 0.925 42 H 0.188 0.812 43 H 0.207 0.793 44 H 0.218 0.782 45 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -4.353 1.834 40.044 40.321 hybrid contribution 0.407 0.439 -0.710 0.928 sum -3.946 2.273 39.334 39.597 Atomic orbital electron populations 1.22163 0.90986 1.03725 1.04392 1.19195 0.95769 0.95210 0.76026 0.85830 1.45762 1.64998 1.15469 1.07969 1.19884 0.78660 0.86583 0.84353 1.90766 1.49198 1.15272 1.84883 1.20163 0.79697 0.86819 0.85020 1.90783 1.50012 1.16328 1.85280 1.45846 1.63755 1.15451 1.08615 1.21569 0.99932 0.95680 0.82812 1.21519 1.01915 0.97823 0.92898 1.19468 0.96789 0.95832 0.92898 1.21476 1.43555 0.97213 0.94775 0.94531 1.25996 0.95215 1.02410 0.95649 1.70064 1.49389 1.37482 1.02200 0.85689 0.78640 0.79652 0.78869 1.19270 1.21168 1.16865 1.24635 1.07033 0.90336 0.92531 1.74048 1.14723 1.11550 1.10402 1.74894 1.19672 1.21854 1.02213 1.22959 1.02824 0.84262 0.95981 1.20702 1.00586 1.00383 0.91356 1.21825 0.94749 0.90236 1.01435 1.21640 0.97539 1.03528 0.91206 1.22533 1.01756 0.83230 1.00655 1.43725 1.39610 1.09212 1.13712 0.90196 0.91836 0.89206 0.74332 0.74184 0.91065 0.90917 0.91591 0.91634 0.95769 0.95855 0.92546 0.81168 0.79298 0.78248 0.78514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 9.47 71.98 0.68 -1.44 16 2 C 0.24 3.94 3.05 44.24 0.13 4.08 16 3 H 0.12 1.57 7.15 -2.39 -0.02 1.55 16 4 N -0.69 -14.27 5.06 -447.43 -2.27 -16.53 16 5 C 0.52 12.34 7.85 87.27 0.69 13.03 16 6 O -0.53 -12.90 16.14 -3.26 -0.05 -12.96 16 7 C 0.50 13.90 7.89 87.27 0.69 14.59 16 8 O -0.55 -17.98 16.48 -3.24 -0.05 -18.03 16 9 N -0.68 -18.25 5.55 -464.41 -2.58 -20.83 16 10 C 0.12 3.73 5.67 86.38 0.49 4.22 16 11 C -0.10 -3.68 5.27 30.60 0.16 -3.52 16 12 C -0.01 -0.53 4.04 29.85 0.12 -0.41 16 13 C -0.53 -30.09 9.66 25.60 0.25 -29.85 16 14 H 0.04 2.26 7.99 -2.91 -0.02 2.23 16 15 C 0.00 0.24 5.47 84.65 0.46 0.70 16 16 N -0.95 -59.41 13.96 21.45 0.30 -59.11 16 17 Si 0.95 44.10 27.47 68.60 1.88 45.98 16 18 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 19 H -0.29 -13.12 7.11 99.48 0.71 -12.42 16 20 H -0.25 -10.56 6.54 99.48 0.65 -9.91 16 21 C 0.12 2.30 6.93 137.71 0.95 3.26 16 22 N -0.27 -6.98 11.89 -49.69 -0.59 -7.57 16 23 N -0.34 -8.97 12.31 -55.40 -0.68 -9.65 16 24 C 0.19 3.49 7.92 134.07 1.06 4.55 16 25 C -0.11 -1.00 10.11 22.39 0.23 -0.77 16 26 C -0.06 -0.08 10.07 22.32 0.22 0.14 16 27 C -0.12 -0.04 9.98 22.08 0.22 0.18 16 28 C 0.04 0.23 10.80 83.23 0.90 1.13 16 29 N -0.38 -5.81 2.95 -342.88 -1.01 -6.82 16 30 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.09 0.88 8.14 -2.38 -0.02 0.86 16 33 H 0.42 9.66 7.83 -92.71 -0.73 8.93 16 34 H 0.42 9.94 7.94 -92.71 -0.74 9.21 16 35 H 0.07 2.19 8.14 -2.39 -0.02 2.18 16 36 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 37 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 38 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 39 H 0.02 1.06 7.20 -2.39 -0.02 1.05 16 40 H 0.02 1.01 7.57 -2.39 -0.02 0.99 16 41 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 42 H 0.17 0.99 8.06 -2.91 -0.02 0.96 16 43 H 0.19 -1.19 8.06 -2.91 -0.02 -1.21 16 44 H 0.20 -1.53 8.06 -2.91 -0.02 -1.55 16 45 H 0.20 -0.03 7.76 -2.91 -0.02 -0.05 16 Total: -1.00 -82.18 389.65 1.74 -80.45 By element: Atomic # 1 Polarization: 15.66 SS G_CDS: -0.47 Total: 15.18 kcal Atomic # 6 Polarization: 2.63 SS G_CDS: 7.26 Total: 9.89 kcal Atomic # 7 Polarization: -113.69 SS G_CDS: -6.83 Total: -120.51 kcal Atomic # 8 Polarization: -30.88 SS G_CDS: -0.11 Total: -30.99 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 1.88 Total: 45.98 kcal Total: -82.18 1.74 -80.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001257124645.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.975 kcal (2) G-P(sol) polarization free energy of solvation -82.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.447 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds