Wall clock time and date at job start Wed Apr 1 2020 05:04:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.47193 * 2 1 4 4 C 1.53001 * 109.47169 * 120.00185 * 2 1 3 5 5 N 1.46503 * 109.47146 * 175.00148 * 4 2 1 6 6 C 1.34777 * 119.99854 * 180.02562 * 5 4 2 7 7 O 1.21648 * 120.00069 * 354.90876 * 6 5 4 8 8 C 1.47054 * 119.99880 * 174.91778 * 6 5 4 9 9 C 1.37604 * 119.93268 * 5.29916 * 8 6 5 10 10 C 1.39936 * 120.01409 * 179.73421 * 9 8 6 11 11 C 1.36220 * 119.91875 * 0.57029 * 10 9 8 12 12 C 1.40917 * 119.79963 * 359.70315 * 11 10 9 13 13 N 1.32575 * 132.18847 * 180.02562 * 12 11 10 14 14 C 1.33238 * 109.13806 * 179.97438 * 13 12 11 15 15 C 1.35448 * 108.57973 * 359.97438 * 14 13 12 16 16 N 1.36251 * 107.17884 * 0.02562 * 15 14 13 17 17 N 1.46899 * 109.47180 * 240.00095 * 2 1 3 18 18 C 1.46902 * 111.00026 * 85.00251 * 17 2 1 19 19 C 1.50700 * 109.47216 * 180.02562 * 18 17 2 20 20 O 1.21292 * 119.99915 * 359.97438 * 19 18 17 21 21 N 1.34775 * 119.99635 * 179.97438 * 19 18 17 22 22 C 1.37097 * 119.99725 * 180.02562 * 21 19 18 23 23 H 1.07998 * 120.00025 * 359.97438 * 22 21 19 24 24 C 1.38954 * 120.00123 * 180.02562 * 22 21 19 25 25 N 1.31414 * 119.99965 * 180.02562 * 24 22 21 26 26 Si 1.86799 * 119.99882 * 359.97438 * 24 22 21 27 27 H 1.48499 * 109.47184 * 90.00307 * 26 24 22 28 28 H 1.48502 * 109.47058 * 210.00424 * 26 24 22 29 29 H 1.48498 * 109.47144 * 330.00184 * 26 24 22 30 30 H 1.08998 * 109.47102 * 59.99928 * 1 2 3 31 31 H 1.08995 * 109.47076 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.46838 * 299.99427 * 1 2 3 33 33 H 1.09000 * 109.47144 * 294.99939 * 4 2 1 34 34 H 1.09002 * 109.47196 * 54.99901 * 4 2 1 35 35 H 0.96997 * 120.00284 * 359.97438 * 5 4 2 36 36 H 1.08001 * 119.98652 * 0.02915 * 9 8 6 37 37 H 1.08001 * 120.04088 * 180.27424 * 10 9 8 38 38 H 1.07995 * 120.10029 * 179.69128 * 11 10 9 39 39 H 1.08002 * 125.70661 * 179.97438 * 14 13 12 40 40 H 1.07999 * 126.41101 * 180.02562 * 15 14 13 41 41 H 1.00904 * 111.00003 * 208.95001 * 17 2 1 42 42 H 1.09006 * 109.46479 * 300.00129 * 18 17 2 43 43 H 1.09000 * 109.47344 * 59.99725 * 18 17 2 44 44 H 0.96996 * 120.00250 * 0.02562 * 21 19 18 45 45 H 0.97002 * 119.99229 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5001 -0.8264 1.1906 6 6 4.1730 -1.4292 2.1907 7 8 3.5793 -1.8033 3.1843 8 6 5.6250 -1.6345 2.0808 9 6 6.3127 -1.1149 1.0081 10 6 7.6953 -1.3045 0.9047 11 6 8.3572 -2.0138 1.8609 12 6 7.6465 -2.5483 2.9540 13 7 8.0313 -3.2617 4.0032 14 6 6.9703 -3.5268 4.7641 15 6 5.8774 -2.9695 4.1899 16 7 6.2932 -2.3512 3.0492 17 7 2.0197 -0.6925 -1.1994 18 6 2.0825 0.2227 -2.3469 19 6 2.5874 -0.5217 -3.5560 20 8 2.8678 -1.6987 -3.4702 21 7 2.7274 0.1204 -4.7327 22 6 3.1862 -0.5569 -5.8328 23 1 3.4358 -1.6048 -5.7565 24 6 3.3310 0.1052 -7.0459 25 7 3.7703 -0.5441 -8.1005 26 14 2.8999 1.9180 -7.1778 27 1 4.1008 2.7360 -6.8715 28 1 2.4354 2.2173 -8.5562 29 1 1.8206 2.2418 -6.2105 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5137 0.8900 33 1 1.7517 -0.1584 2.1370 34 1 1.6054 -1.7199 1.2951 35 1 3.9824 -0.4628 0.4316 36 1 5.7859 -0.5566 0.2484 37 1 8.2361 -0.8931 0.0652 38 1 9.4234 -2.1661 1.7814 39 1 6.9800 -4.0914 5.6847 40 1 4.8657 -3.0081 4.5659 41 1 2.9174 -1.1204 -1.0287 42 1 1.0871 0.6164 -2.5524 43 1 2.7589 1.0463 -2.1182 44 1 2.5035 1.0617 -4.8012 45 1 3.8717 -0.0817 -8.9472 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266956879.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:04:24 Heat of formation + Delta-G solvation = 37.816324 kcal Electronic energy + Delta-G solvation = -29254.962838 eV Core-core repulsion = 25081.527032 eV Total energy + Delta-G solvation = -4173.435806 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -43.12045 -40.28440 -38.73396 -37.53818 -37.23062 -34.50790 -33.98241 -33.84794 -31.82162 -31.42885 -30.49991 -29.18776 -27.09467 -26.47643 -24.77794 -23.86704 -22.93875 -22.42916 -21.12924 -20.81052 -19.53984 -18.65875 -18.19862 -17.87212 -17.00968 -16.57061 -16.46060 -16.22671 -15.86476 -15.58895 -15.51796 -15.04224 -14.76810 -14.49664 -14.26645 -14.00823 -13.80886 -13.30003 -13.11856 -12.91126 -12.80122 -12.72423 -12.67752 -12.30118 -12.14744 -12.06404 -12.00095 -11.71188 -11.37245 -11.29548 -11.09945 -10.67794 -10.54613 -10.41033 -10.06029 -9.66826 -9.62846 -9.16677 -8.73024 -8.38593 -8.27138 -8.17438 -6.39502 -3.91562 -0.11175 0.95295 1.95767 2.15207 2.71197 2.78027 2.94896 2.98605 3.08408 3.22151 3.61311 3.79540 3.90339 3.99316 4.02162 4.18090 4.33731 4.43245 4.62354 4.64758 4.89830 5.00566 5.05934 5.11800 5.13174 5.22423 5.28842 5.40512 5.43064 5.49745 5.54021 5.60556 5.68532 5.69899 5.76206 5.79381 5.83806 6.04981 6.14209 6.34694 6.61287 6.85734 6.88214 7.30396 7.48452 7.55015 7.57671 8.04868 8.49822 8.85799 9.32770 9.71563 10.73374 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.012391 B = 0.002469 C = 0.002148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2259.143908 B =11338.535513 C =13030.102107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.071 3.929 3 H 0.051 0.949 4 C 0.119 3.881 5 N -0.717 5.717 6 C 0.568 3.432 7 O -0.526 6.526 8 C 0.028 3.972 9 C -0.077 4.077 10 C -0.119 4.119 11 C -0.042 4.042 12 C 0.201 3.799 13 N -0.483 5.483 14 C 0.023 3.977 15 C -0.067 4.067 16 N -0.335 5.335 17 N -0.664 5.664 18 C 0.046 3.954 19 C 0.446 3.554 20 O -0.564 6.564 21 N -0.588 5.588 22 C -0.307 4.307 23 H 0.120 0.880 24 C 0.042 3.958 25 N -0.879 5.879 26 Si 0.880 3.120 27 H -0.271 1.271 28 H -0.276 1.276 29 H -0.269 1.269 30 H 0.063 0.937 31 H 0.068 0.932 32 H 0.058 0.942 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.401 0.599 36 H 0.154 0.846 37 H 0.154 0.846 38 H 0.157 0.843 39 H 0.184 0.816 40 H 0.193 0.807 41 H 0.347 0.653 42 H 0.091 0.909 43 H 0.046 0.954 44 H 0.370 0.630 45 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.069 5.473 21.270 22.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.039 4.039 3 H 0.069 0.931 4 C -0.004 4.004 5 N -0.370 5.370 6 C 0.353 3.647 7 O -0.403 6.403 8 C -0.078 4.078 9 C -0.099 4.099 10 C -0.142 4.142 11 C -0.062 4.062 12 C -0.040 4.040 13 N -0.203 5.203 14 C -0.129 4.129 15 C -0.200 4.200 16 N -0.007 5.007 17 N -0.299 5.299 18 C -0.087 4.087 19 C 0.232 3.768 20 O -0.446 6.446 21 N -0.227 5.227 22 C -0.436 4.436 23 H 0.138 0.862 24 C -0.161 4.161 25 N -0.518 5.518 26 Si 0.706 3.294 27 H -0.196 1.196 28 H -0.201 1.201 29 H -0.195 1.195 30 H 0.082 0.918 31 H 0.087 0.913 32 H 0.077 0.923 33 H 0.099 0.901 34 H 0.103 0.897 35 H 0.238 0.762 36 H 0.171 0.829 37 H 0.172 0.828 38 H 0.175 0.825 39 H 0.201 0.799 40 H 0.210 0.790 41 H 0.168 0.832 42 H 0.109 0.891 43 H 0.063 0.937 44 H 0.203 0.797 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 1.996 3.876 21.818 22.249 hybrid contribution -0.223 2.410 -0.741 2.532 sum 1.773 6.286 21.077 22.065 Atomic orbital electron populations 1.21740 0.92993 1.03223 1.01737 1.21841 0.97453 0.95924 0.88696 0.93073 1.21736 0.77774 1.02672 0.98207 1.45819 1.08686 1.59322 1.23197 1.17404 0.85231 0.78563 0.83457 1.90816 1.69429 1.50304 1.29725 1.20001 0.92981 1.02445 0.92398 1.21388 0.95381 0.98045 0.95105 1.21018 0.93496 0.99740 0.99971 1.20512 1.00995 0.94848 0.89837 1.21035 0.80493 1.03553 0.98942 1.70659 1.29740 1.16462 1.03405 1.22628 0.87520 1.02006 1.00763 1.23125 1.02684 1.04998 0.89221 1.42530 1.09269 1.32929 1.15976 1.60105 1.34821 1.32276 1.02715 1.21813 1.01721 0.93834 0.91327 1.19659 0.84871 0.88240 0.84045 1.90583 1.53885 1.15760 1.84371 1.42207 1.59872 1.11092 1.09551 1.19426 1.40292 0.98021 0.85822 0.86248 1.25054 0.97388 0.98451 0.95221 1.69622 1.44800 1.36556 1.00841 0.86674 0.78965 0.85045 0.78702 1.19631 1.20105 1.19488 0.91843 0.91310 0.92303 0.90110 0.89716 0.76211 0.82871 0.82801 0.82521 0.79903 0.79024 0.83176 0.89134 0.93653 0.79689 0.91519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.21 9.42 37.16 0.35 -0.86 16 2 C 0.07 0.66 2.81 -67.71 -0.19 0.47 16 3 H 0.05 0.41 7.80 -51.93 -0.40 0.00 16 4 C 0.12 1.09 5.32 -4.04 -0.02 1.07 16 5 N -0.72 -6.59 4.93 -61.50 -0.30 -6.90 16 6 C 0.57 6.50 7.74 -12.69 -0.10 6.40 16 7 O -0.53 -7.32 14.64 5.23 0.08 -7.24 16 8 C 0.03 0.31 6.78 -81.86 -0.56 -0.25 16 9 C -0.08 -0.65 9.53 -39.18 -0.37 -1.02 16 10 C -0.12 -0.91 10.04 -39.67 -0.40 -1.30 16 11 C -0.04 -0.38 10.09 -39.29 -0.40 -0.78 16 12 C 0.20 2.48 7.80 -156.02 -1.22 1.26 16 13 N -0.48 -6.37 11.31 -12.76 -0.14 -6.52 16 14 C 0.02 0.26 11.83 -17.94 -0.21 0.05 16 15 C -0.07 -0.79 10.80 -16.58 -0.18 -0.97 16 16 N -0.34 -4.16 2.97 -58.75 -0.17 -4.33 16 17 N -0.66 -8.61 5.93 -107.99 -0.64 -9.25 16 18 C 0.05 0.65 5.96 -4.97 -0.03 0.62 16 19 C 0.45 9.27 7.82 -10.99 -0.09 9.19 16 20 O -0.56 -14.18 15.78 5.55 0.09 -14.09 16 21 N -0.59 -13.05 5.09 -10.96 -0.06 -13.11 16 22 C -0.31 -8.29 10.16 -14.93 -0.15 -8.44 16 23 H 0.12 3.72 7.39 -52.49 -0.39 3.34 16 24 C 0.04 1.11 5.50 -17.47 -0.10 1.02 16 25 N -0.88 -24.86 13.96 55.50 0.77 -24.09 16 26 Si 0.88 18.42 27.74 -169.99 -4.71 13.70 16 27 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 28 H -0.28 -5.86 7.11 56.52 0.40 -5.45 16 29 H -0.27 -5.10 6.52 56.52 0.37 -4.73 16 30 H 0.06 0.58 7.45 -51.93 -0.39 0.19 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.40 3.05 5.37 -40.82 -0.22 2.83 16 36 H 0.15 0.89 6.34 -52.49 -0.33 0.56 16 37 H 0.15 0.74 8.06 -52.49 -0.42 0.32 16 38 H 0.16 1.05 8.06 -52.49 -0.42 0.63 16 39 H 0.18 1.41 8.06 -52.49 -0.42 0.98 16 40 H 0.19 2.16 6.68 -52.49 -0.35 1.81 16 41 H 0.35 4.61 6.41 -39.29 -0.25 4.36 16 42 H 0.09 1.17 7.44 -51.93 -0.39 0.78 16 43 H 0.05 0.52 8.06 -51.93 -0.42 0.10 16 44 H 0.37 7.15 5.76 -40.82 -0.24 6.91 16 45 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 378.39 15.07 5.70 5.70 Total: -1.00 -35.86 378.39 -8.55 -44.41 By element: Atomic # 1 Polarization: 20.77 SS G_CDS: -5.50 Total: 15.27 kcal Atomic # 6 Polarization: 10.09 SS G_CDS: -3.65 Total: 6.44 kcal Atomic # 7 Polarization: -63.65 SS G_CDS: -0.54 Total: -64.19 kcal Atomic # 8 Polarization: -21.50 SS G_CDS: 0.16 Total: -21.33 kcal Atomic # 14 Polarization: 18.42 SS G_CDS: -4.71 Total: 13.70 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -35.86 -8.55 -44.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266956879.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.227 kcal (2) G-P(sol) polarization free energy of solvation -35.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.410 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds