Wall clock time and date at job start Wed Apr 1 2020 05:04:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.47193 * 2 1 4 4 C 1.53001 * 109.47169 * 120.00185 * 2 1 3 5 5 N 1.46503 * 109.47146 * 175.00148 * 4 2 1 6 6 C 1.34777 * 119.99854 * 180.02562 * 5 4 2 7 7 O 1.21648 * 120.00069 * 354.90876 * 6 5 4 8 8 C 1.47054 * 119.99880 * 174.91778 * 6 5 4 9 9 C 1.37604 * 119.93268 * 5.29916 * 8 6 5 10 10 C 1.39936 * 120.01409 * 179.73421 * 9 8 6 11 11 C 1.36220 * 119.91875 * 0.57029 * 10 9 8 12 12 C 1.40917 * 119.79963 * 359.70315 * 11 10 9 13 13 N 1.32575 * 132.18847 * 180.02562 * 12 11 10 14 14 C 1.33238 * 109.13806 * 179.97438 * 13 12 11 15 15 C 1.35448 * 108.57973 * 359.97438 * 14 13 12 16 16 N 1.36251 * 107.17884 * 0.02562 * 15 14 13 17 17 N 1.46899 * 109.47180 * 240.00095 * 2 1 3 18 18 C 1.46902 * 111.00026 * 85.00251 * 17 2 1 19 19 C 1.50700 * 109.47216 * 180.02562 * 18 17 2 20 20 O 1.21292 * 119.99915 * 359.97438 * 19 18 17 21 21 N 1.34775 * 119.99635 * 179.97438 * 19 18 17 22 22 C 1.37097 * 119.99725 * 180.02562 * 21 19 18 23 23 H 1.07998 * 120.00025 * 359.97438 * 22 21 19 24 24 C 1.38954 * 120.00123 * 180.02562 * 22 21 19 25 25 N 1.31414 * 119.99965 * 180.02562 * 24 22 21 26 26 Si 1.86799 * 119.99882 * 359.97438 * 24 22 21 27 27 H 1.48499 * 109.47184 * 90.00307 * 26 24 22 28 28 H 1.48502 * 109.47058 * 210.00424 * 26 24 22 29 29 H 1.48498 * 109.47144 * 330.00184 * 26 24 22 30 30 H 1.08998 * 109.47102 * 59.99928 * 1 2 3 31 31 H 1.08995 * 109.47076 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.46838 * 299.99427 * 1 2 3 33 33 H 1.09000 * 109.47144 * 294.99939 * 4 2 1 34 34 H 1.09002 * 109.47196 * 54.99901 * 4 2 1 35 35 H 0.96997 * 120.00284 * 359.97438 * 5 4 2 36 36 H 1.08001 * 119.98652 * 0.02915 * 9 8 6 37 37 H 1.08001 * 120.04088 * 180.27424 * 10 9 8 38 38 H 1.07995 * 120.10029 * 179.69128 * 11 10 9 39 39 H 1.08002 * 125.70661 * 179.97438 * 14 13 12 40 40 H 1.07999 * 126.41101 * 180.02562 * 15 14 13 41 41 H 1.00904 * 111.00003 * 208.95001 * 17 2 1 42 42 H 1.09006 * 109.46479 * 300.00129 * 18 17 2 43 43 H 1.09000 * 109.47344 * 59.99725 * 18 17 2 44 44 H 0.96996 * 120.00250 * 0.02562 * 21 19 18 45 45 H 0.97002 * 119.99229 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5001 -0.8264 1.1906 6 6 4.1730 -1.4292 2.1907 7 8 3.5793 -1.8033 3.1843 8 6 5.6250 -1.6345 2.0808 9 6 6.3127 -1.1149 1.0081 10 6 7.6953 -1.3045 0.9047 11 6 8.3572 -2.0138 1.8609 12 6 7.6465 -2.5483 2.9540 13 7 8.0313 -3.2617 4.0032 14 6 6.9703 -3.5268 4.7641 15 6 5.8774 -2.9695 4.1899 16 7 6.2932 -2.3512 3.0492 17 7 2.0197 -0.6925 -1.1994 18 6 2.0825 0.2227 -2.3469 19 6 2.5874 -0.5217 -3.5560 20 8 2.8678 -1.6987 -3.4702 21 7 2.7274 0.1204 -4.7327 22 6 3.1862 -0.5569 -5.8328 23 1 3.4358 -1.6048 -5.7565 24 6 3.3310 0.1052 -7.0459 25 7 3.7703 -0.5441 -8.1005 26 14 2.8999 1.9180 -7.1778 27 1 4.1008 2.7360 -6.8715 28 1 2.4354 2.2173 -8.5562 29 1 1.8206 2.2418 -6.2105 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5137 0.8900 33 1 1.7517 -0.1584 2.1370 34 1 1.6054 -1.7199 1.2951 35 1 3.9824 -0.4628 0.4316 36 1 5.7859 -0.5566 0.2484 37 1 8.2361 -0.8931 0.0652 38 1 9.4234 -2.1661 1.7814 39 1 6.9800 -4.0914 5.6847 40 1 4.8657 -3.0081 4.5659 41 1 2.9174 -1.1204 -1.0287 42 1 1.0871 0.6164 -2.5524 43 1 2.7589 1.0463 -2.1182 44 1 2.5035 1.0617 -4.8012 45 1 3.8717 -0.0817 -8.9472 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266956879.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:04:23 Heat of formation + Delta-G solvation = 9.728776 kcal Electronic energy + Delta-G solvation = -29256.180805 eV Core-core repulsion = 25081.527032 eV Total energy + Delta-G solvation = -4174.653774 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.68 seconds Orbital eigenvalues (eV) -43.93384 -41.13993 -40.28487 -38.40676 -38.15371 -36.01470 -35.25902 -34.63568 -33.72552 -32.41552 -31.29702 -29.98583 -28.27364 -27.50837 -25.73318 -25.27005 -23.71804 -23.25264 -21.96884 -21.59084 -21.26809 -20.31054 -19.18887 -18.67437 -17.80182 -17.71098 -17.36273 -17.08175 -16.96520 -16.78526 -16.46880 -16.36530 -15.83971 -15.56040 -15.32740 -15.08529 -14.89790 -14.58338 -14.43767 -14.21827 -13.71669 -13.69594 -13.40583 -13.36528 -13.30283 -12.96621 -12.85625 -12.81300 -12.56788 -12.38499 -12.13981 -11.96757 -11.89308 -11.47908 -11.43555 -11.28735 -10.44060 -10.40070 -10.22243 -9.96986 -9.36735 -8.98526 -8.38597 -5.99573 -0.85743 0.19387 1.17347 1.32959 1.33904 1.38046 1.47424 1.91580 1.94797 1.99229 2.25670 2.44129 2.69053 3.12887 3.18499 3.25050 3.37496 3.44876 3.62925 3.75279 3.99131 4.11240 4.18540 4.32335 4.36531 4.39801 4.39857 4.45079 4.58930 4.59709 4.76015 4.82566 4.88412 4.94641 5.01269 5.05191 5.08767 5.34162 5.46104 5.54636 5.55388 5.81830 5.91776 6.04269 6.12004 6.33295 6.62212 6.71192 6.76849 6.91529 7.43231 7.99961 8.78953 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.012391 B = 0.002469 C = 0.002148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2259.143908 B =11338.535513 C =13030.102107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.080 3.920 3 H 0.080 0.920 4 C 0.122 3.878 5 N -0.704 5.704 6 C 0.566 3.434 7 O -0.559 6.559 8 C -0.004 4.004 9 C -0.062 4.062 10 C -0.108 4.108 11 C -0.051 4.051 12 C 0.182 3.818 13 N -0.515 5.515 14 C 0.021 3.979 15 C -0.089 4.089 16 N -0.343 5.343 17 N -0.686 5.686 18 C 0.060 3.940 19 C 0.448 3.552 20 O -0.615 6.615 21 N -0.590 5.590 22 C -0.326 4.326 23 H 0.054 0.946 24 C -0.017 4.017 25 N -0.936 5.936 26 Si 0.964 3.036 27 H -0.254 1.254 28 H -0.281 1.281 29 H -0.229 1.229 30 H 0.063 0.937 31 H 0.050 0.950 32 H 0.081 0.919 33 H 0.093 0.907 34 H 0.065 0.935 35 H 0.410 0.590 36 H 0.183 0.817 37 H 0.191 0.809 38 H 0.179 0.821 39 H 0.210 0.790 40 H 0.190 0.810 41 H 0.343 0.657 42 H 0.114 0.886 43 H 0.090 0.910 44 H 0.390 0.610 45 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.523 9.543 21.641 23.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.029 4.029 3 H 0.098 0.902 4 C -0.001 4.001 5 N -0.357 5.357 6 C 0.352 3.648 7 O -0.439 6.439 8 C -0.110 4.110 9 C -0.084 4.084 10 C -0.131 4.131 11 C -0.071 4.071 12 C -0.059 4.059 13 N -0.236 5.236 14 C -0.131 4.131 15 C -0.222 4.222 16 N -0.015 5.015 17 N -0.322 5.322 18 C -0.072 4.072 19 C 0.236 3.764 20 O -0.499 6.499 21 N -0.232 5.232 22 C -0.456 4.456 23 H 0.073 0.927 24 C -0.215 4.215 25 N -0.577 5.577 26 Si 0.784 3.216 27 H -0.179 1.179 28 H -0.206 1.206 29 H -0.152 1.152 30 H 0.082 0.918 31 H 0.070 0.930 32 H 0.100 0.900 33 H 0.111 0.889 34 H 0.084 0.916 35 H 0.249 0.751 36 H 0.200 0.800 37 H 0.208 0.792 38 H 0.196 0.804 39 H 0.227 0.773 40 H 0.207 0.793 41 H 0.163 0.837 42 H 0.132 0.868 43 H 0.107 0.893 44 H 0.226 0.774 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 1.425 7.974 22.204 23.636 hybrid contribution -0.029 1.016 -0.864 1.334 sum 1.396 8.990 21.340 23.198 Atomic orbital electron populations 1.21765 0.92547 1.02518 1.02907 1.21876 0.97606 0.96772 0.86668 0.90191 1.21723 0.77507 1.01946 0.98899 1.45716 1.08753 1.58483 1.22796 1.17559 0.85534 0.78286 0.83379 1.90793 1.70105 1.51895 1.31130 1.20233 0.93057 1.04190 0.93486 1.21874 0.95966 0.96330 0.94236 1.21481 0.93187 0.98279 1.00155 1.20934 1.02157 0.94795 0.89203 1.21622 0.80870 1.03758 0.99649 1.70639 1.30635 1.17840 1.04439 1.23095 0.86931 1.01734 1.01384 1.23227 1.02893 1.06170 0.89942 1.42666 1.09514 1.33097 1.16248 1.60080 1.34934 1.33267 1.03920 1.21747 1.03480 0.93802 0.88204 1.21013 0.82257 0.87907 0.85244 1.90568 1.55317 1.18577 1.85435 1.42027 1.60519 1.11852 1.08782 1.18982 1.42130 0.96028 0.88415 0.92739 1.26131 0.96473 1.05002 0.93895 1.69815 1.46462 1.39574 1.01819 0.85372 0.80305 0.76573 0.79301 1.17869 1.20608 1.15235 0.91766 0.93039 0.90017 0.88887 0.91619 0.75098 0.80033 0.79219 0.80366 0.77343 0.79266 0.83651 0.86832 0.89270 0.77421 0.91247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 9.42 71.98 0.68 -1.30 16 2 C 0.08 1.19 2.81 44.92 0.13 1.31 16 3 H 0.08 0.81 7.80 -2.38 -0.02 0.79 16 4 C 0.12 1.98 5.32 86.38 0.46 2.44 16 5 N -0.70 -11.65 4.93 -466.72 -2.30 -13.95 16 6 C 0.57 12.70 7.74 86.56 0.67 13.37 16 7 O -0.56 -15.92 14.64 -4.18 -0.06 -15.98 16 8 C 0.00 -0.08 6.78 40.37 0.27 0.19 16 9 C -0.06 -0.90 9.53 22.53 0.21 -0.69 16 10 C -0.11 -1.35 10.04 22.21 0.22 -1.12 16 11 C -0.05 -0.85 10.09 22.46 0.23 -0.63 16 12 C 0.18 4.50 7.80 134.09 1.05 5.55 16 13 N -0.51 -13.90 11.31 -194.28 -2.20 -16.09 16 14 C 0.02 0.48 11.83 83.83 0.99 1.47 16 15 C -0.09 -2.24 10.80 83.36 0.90 -1.34 16 16 N -0.34 -8.67 2.97 -339.78 -1.01 -9.68 16 17 N -0.69 -15.85 5.93 -495.56 -2.94 -18.78 16 18 C 0.06 1.44 5.96 85.56 0.51 1.95 16 19 C 0.45 17.94 7.82 87.66 0.69 18.62 16 20 O -0.61 -31.39 15.78 -3.07 -0.05 -31.44 16 21 N -0.59 -25.28 5.09 -306.98 -1.56 -26.85 16 22 C -0.33 -18.08 10.16 84.04 0.85 -17.22 16 23 H 0.05 3.65 7.39 -2.91 -0.02 3.63 16 24 C -0.02 -0.88 5.50 84.93 0.47 -0.41 16 25 N -0.94 -54.68 13.96 21.66 0.30 -54.38 16 26 Si 0.96 36.27 27.74 68.60 1.90 38.17 16 27 H -0.25 -8.91 7.11 99.48 0.71 -8.20 16 28 H -0.28 -10.75 7.11 99.48 0.71 -10.05 16 29 H -0.23 -7.06 6.52 99.48 0.65 -6.41 16 30 H 0.06 0.92 7.45 -2.39 -0.02 0.90 16 31 H 0.05 0.91 8.14 -2.39 -0.02 0.90 16 32 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.41 5.05 5.37 -92.71 -0.50 4.55 16 36 H 0.18 1.45 6.34 -2.91 -0.02 1.43 16 37 H 0.19 0.99 8.06 -2.91 -0.02 0.97 16 38 H 0.18 2.06 8.06 -2.91 -0.02 2.04 16 39 H 0.21 3.30 8.06 -2.91 -0.02 3.27 16 40 H 0.19 4.65 6.68 -2.91 -0.02 4.63 16 41 H 0.34 8.35 6.41 -89.69 -0.58 7.78 16 42 H 0.11 2.32 7.44 -2.38 -0.02 2.30 16 43 H 0.09 1.46 8.06 -2.39 -0.02 1.44 16 44 H 0.39 13.49 5.76 -92.71 -0.53 12.96 16 45 H 0.28 14.87 8.31 -92.71 -0.77 14.10 16 Total: -1.00 -86.15 378.39 -0.18 -86.33 By element: Atomic # 1 Polarization: 41.04 SS G_CDS: -0.60 Total: 40.44 kcal Atomic # 6 Polarization: 13.88 SS G_CDS: 8.33 Total: 22.20 kcal Atomic # 7 Polarization: -130.03 SS G_CDS: -9.70 Total: -139.73 kcal Atomic # 8 Polarization: -47.31 SS G_CDS: -0.11 Total: -47.42 kcal Atomic # 14 Polarization: 36.27 SS G_CDS: 1.90 Total: 38.17 kcal Total: -86.15 -0.18 -86.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266956879.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.060 kcal (2) G-P(sol) polarization free energy of solvation -86.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.331 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.68 seconds