Wall clock time and date at job start Wed Apr 1 2020 04:42:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.46824 * 2 1 4 4 C 1.52995 * 109.46913 * 120.00027 * 2 1 3 5 5 N 1.46901 * 109.47271 * 175.00040 * 4 2 1 6 6 C 1.46902 * 111.00496 * 180.02562 * 5 4 2 7 7 C 1.50691 * 109.47385 * 179.97438 * 6 5 4 8 8 O 1.21296 * 120.00049 * 359.97438 * 7 6 5 9 9 N 1.34770 * 120.00328 * 179.97438 * 7 6 5 10 10 C 1.37101 * 120.00472 * 179.97438 * 9 7 6 11 11 H 1.08003 * 119.99971 * 0.02562 * 10 9 7 12 12 C 1.38951 * 120.00252 * 180.02562 * 10 9 7 13 13 N 1.31412 * 119.99724 * 0.02562 * 12 10 9 14 14 Si 1.86796 * 119.99952 * 180.02562 * 12 10 9 15 15 H 1.48494 * 109.47352 * 59.99800 * 14 12 10 16 16 H 1.48505 * 109.47095 * 180.02562 * 14 12 10 17 17 H 1.48498 * 109.47025 * 299.99315 * 14 12 10 18 18 N 1.46502 * 109.46802 * 239.99917 * 2 1 3 19 19 C 1.34767 * 120.00131 * 85.00248 * 18 2 1 20 20 O 1.21642 * 119.99948 * 359.97438 * 19 18 2 21 21 C 1.47169 * 120.00271 * 179.97438 * 19 18 2 22 22 C 1.38595 * 120.72323 * 359.97438 * 21 19 18 23 23 C 1.38923 * 121.36255 * 179.72802 * 22 21 19 24 24 C 1.35823 * 122.59802 * 359.97438 * 23 22 21 25 25 C 1.40842 * 120.55807 * 0.02562 * 24 23 22 26 26 C 1.38423 * 134.90199 * 179.97438 * 25 24 23 27 27 N 1.33884 * 107.84880 * 180.02562 * 26 25 24 28 28 H 0.97000 * 125.02184 * 180.02562 * 27 26 25 29 29 N 1.39986 * 109.96055 * 359.97438 * 27 26 25 30 30 C 1.31474 * 109.01699 * 0.02562 * 29 27 26 31 31 H 1.09004 * 109.47393 * 299.99903 * 1 2 3 32 32 H 1.08999 * 109.46959 * 60.00068 * 1 2 3 33 33 H 1.09004 * 109.47367 * 180.02562 * 1 2 3 34 34 H 1.09004 * 109.47324 * 294.99612 * 4 2 1 35 35 H 1.09002 * 109.47704 * 55.00166 * 4 2 1 36 36 H 1.00902 * 110.99539 * 303.95043 * 5 4 2 37 37 H 1.09000 * 109.46475 * 300.00010 * 6 5 4 38 38 H 1.09005 * 109.47212 * 59.99394 * 6 5 4 39 39 H 0.97006 * 119.99886 * 0.02562 * 9 7 6 40 40 H 0.97004 * 119.99731 * 180.02562 * 13 12 10 41 41 H 0.97001 * 119.99464 * 264.99432 * 18 2 1 42 42 H 1.08003 * 119.31751 * 359.74743 * 22 21 19 43 43 H 1.08000 * 118.70135 * 179.97438 * 23 22 21 44 44 H 1.08001 * 119.72450 * 179.97438 * 24 23 22 45 45 H 1.08005 * 126.07331 * 0.06121 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2492 5 7 3.5040 -0.8267 1.1905 6 6 4.0303 -1.5159 2.3762 7 6 5.5314 -1.6055 2.2802 8 8 6.1065 -1.1413 1.3184 9 7 6.2352 -2.2014 3.2630 10 6 7.6010 -2.2834 3.1755 11 1 8.1130 -1.8700 2.3191 12 6 8.3265 -2.8982 4.1886 13 7 7.7035 -3.4016 5.2304 14 14 10.1873 -3.0092 4.0695 15 1 10.7612 -1.6416 3.9966 16 1 10.7193 -3.7066 5.2679 17 1 10.5609 -3.7686 2.8493 18 7 2.0183 -0.6906 -1.1962 19 6 2.1470 -0.0184 -2.3571 20 8 1.8573 1.1618 -2.4118 21 6 2.6380 -0.7120 -3.5586 22 6 2.9729 -2.0561 -3.5131 23 6 3.4323 -2.7254 -4.6405 24 6 3.5808 -2.1143 -5.8444 25 6 3.2682 -0.7497 -5.9982 26 6 3.3046 0.1485 -7.0508 27 7 2.8832 1.3341 -6.5934 28 1 2.8101 2.1420 -7.1253 29 7 2.5624 1.2354 -5.2343 30 6 2.7776 0.0024 -4.8318 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0277 0.0005 34 1 1.7516 -0.1583 2.1370 35 1 1.6054 -1.7198 1.2952 36 1 3.7995 -1.2885 0.3434 37 1 3.7556 -0.9588 3.2719 38 1 3.6094 -2.5200 2.4295 39 1 5.7754 -2.5730 4.0321 40 1 8.2100 -3.8305 5.9378 41 1 2.2490 -1.6318 -1.1525 42 1 2.8743 -2.5945 -2.5820 43 1 3.6814 -3.7729 -4.5563 44 1 3.9423 -2.6794 -6.6908 45 1 3.6169 -0.0687 -8.0616 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268697517.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:42:57 Heat of formation + Delta-G solvation = 29.682830 kcal Electronic energy + Delta-G solvation = -28936.886074 eV Core-core repulsion = 24763.097573 eV Total energy + Delta-G solvation = -4173.788501 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.47730 -39.74172 -38.27319 -37.15718 -36.50271 -34.20725 -33.59358 -32.43134 -31.55959 -31.18016 -30.39631 -28.95071 -27.55266 -25.11352 -24.87584 -23.32948 -22.65740 -22.08448 -20.69144 -20.17162 -19.22267 -18.43241 -17.89106 -17.63257 -16.97488 -16.23248 -16.10376 -15.39790 -15.33465 -15.22230 -14.80871 -14.49305 -14.38743 -14.22191 -14.08412 -13.80440 -13.47161 -13.45516 -13.01056 -12.58878 -12.43356 -12.32802 -12.01775 -11.97441 -11.86666 -11.65155 -11.57540 -11.43309 -11.02232 -10.90302 -10.73768 -10.48775 -10.42717 -10.19471 -9.71197 -9.48084 -9.14978 -9.02873 -8.43619 -8.04546 -7.93918 -7.88983 -6.39935 -3.80590 0.08428 1.53807 2.00201 2.39723 2.96943 3.13619 3.21659 3.27046 3.31793 3.77028 3.92893 3.96919 4.08317 4.21169 4.32580 4.64828 4.73814 4.88944 4.92876 5.03277 5.07208 5.12072 5.23811 5.26309 5.32093 5.34488 5.49608 5.63738 5.65509 5.69303 5.80320 5.97590 5.99345 6.04342 6.11039 6.17302 6.25141 6.28964 6.50488 6.56074 6.75973 7.19915 7.36062 7.54281 7.56922 7.64939 8.08158 8.34382 8.63465 9.19885 9.56273 10.08130 10.77782 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.011339 B = 0.002333 C = 0.002055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2468.712332 B =11998.438422 C =13624.618481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.146 3.854 3 H 0.098 0.902 4 C 0.051 3.949 5 N -0.667 5.667 6 C 0.050 3.950 7 C 0.440 3.560 8 O -0.581 6.581 9 N -0.564 5.564 10 C -0.299 4.299 11 H 0.102 0.898 12 C 0.022 3.978 13 N -0.903 5.903 14 Si 0.931 3.069 15 H -0.273 1.273 16 H -0.285 1.285 17 H -0.274 1.274 18 N -0.722 5.722 19 C 0.563 3.437 20 O -0.522 6.522 21 C -0.118 4.118 22 C -0.026 4.026 23 C -0.169 4.169 24 C -0.011 4.011 25 C -0.221 4.221 26 C 0.090 3.910 27 N -0.431 5.431 28 H 0.444 0.556 29 N -0.270 5.270 30 C 0.138 3.862 31 H 0.067 0.933 32 H 0.062 0.938 33 H 0.055 0.945 34 H 0.087 0.913 35 H 0.032 0.968 36 H 0.348 0.652 37 H 0.087 0.913 38 H 0.043 0.957 39 H 0.392 0.608 40 H 0.272 0.728 41 H 0.394 0.606 42 H 0.132 0.868 43 H 0.130 0.870 44 H 0.127 0.873 45 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.056 -0.005 -21.202 26.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.042 3.958 3 H 0.116 0.884 4 C -0.079 4.079 5 N -0.300 5.300 6 C -0.083 4.083 7 C 0.225 3.775 8 O -0.465 6.465 9 N -0.201 5.201 10 C -0.428 4.428 11 H 0.120 0.880 12 C -0.179 4.179 13 N -0.544 5.544 14 Si 0.758 3.242 15 H -0.199 1.199 16 H -0.210 1.210 17 H -0.199 1.199 18 N -0.375 5.375 19 C 0.351 3.649 20 O -0.398 6.398 21 C -0.124 4.124 22 C -0.048 4.048 23 C -0.188 4.188 24 C -0.032 4.032 25 C -0.231 4.231 26 C -0.067 4.067 27 N -0.130 5.130 28 H 0.289 0.711 29 N -0.095 5.095 30 C -0.020 4.020 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.074 0.926 34 H 0.106 0.894 35 H 0.050 0.950 36 H 0.168 0.832 37 H 0.105 0.895 38 H 0.061 0.939 39 H 0.225 0.775 40 H 0.081 0.919 41 H 0.229 0.771 42 H 0.150 0.850 43 H 0.148 0.852 44 H 0.145 0.855 45 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -15.098 2.936 -21.060 26.079 hybrid contribution 0.849 -2.146 -0.161 2.313 sum -14.248 0.790 -21.222 25.573 Atomic orbital electron populations 1.22150 0.95097 1.02002 1.02728 1.21017 0.93347 0.98565 0.82894 0.88350 1.22311 0.88789 0.98958 0.97876 1.60011 1.07536 1.57531 1.04929 1.21694 0.95121 0.96925 0.94527 1.19815 0.88103 0.84248 0.85315 1.90540 1.71104 1.51377 1.33475 1.41854 1.07390 1.50944 1.19891 1.19656 0.81564 1.35068 1.06559 0.87997 1.25255 1.00658 0.96813 0.95221 1.69606 1.36760 1.38641 1.09392 0.85920 0.82182 0.78613 0.77525 1.19887 1.20998 1.19923 1.45890 1.68158 1.13716 1.09701 1.17843 0.77812 0.86577 0.82651 1.90827 1.49247 1.15016 1.84736 1.19857 1.08795 0.93208 0.90535 1.21264 0.92554 0.92283 0.98747 1.20357 1.05099 1.00854 0.92522 1.20301 0.94077 0.91192 0.97596 1.19604 1.14205 0.96263 0.93004 1.22770 0.98593 0.85981 0.99396 1.46581 1.46486 1.10563 1.09409 0.71127 1.77873 1.25629 1.17670 0.88353 1.21483 0.96781 0.90458 0.93302 0.91441 0.91870 0.92588 0.89442 0.94994 0.83244 0.89467 0.93866 0.77471 0.91851 0.77089 0.85046 0.85228 0.85502 0.79304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.64 9.48 37.16 0.35 -1.29 16 2 C 0.15 1.80 2.88 -67.93 -0.20 1.61 16 3 H 0.10 1.49 7.58 -51.93 -0.39 1.10 16 4 C 0.05 0.61 5.30 -3.83 -0.02 0.59 16 5 N -0.67 -10.86 6.12 -115.06 -0.70 -11.56 16 6 C 0.05 0.87 6.17 -4.98 -0.03 0.84 16 7 C 0.44 10.45 7.82 -10.99 -0.09 10.37 16 8 O -0.58 -16.03 15.78 5.54 0.09 -15.95 16 9 N -0.56 -14.34 5.29 -10.97 -0.06 -14.40 16 10 C -0.30 -8.39 9.68 -14.93 -0.14 -8.54 16 11 H 0.10 3.01 7.16 -52.48 -0.38 2.63 16 12 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 13 N -0.90 -24.59 13.05 55.50 0.72 -23.87 16 14 Si 0.93 21.19 29.55 -169.99 -5.02 16.16 16 15 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 16 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 17 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 18 N -0.72 -8.90 4.31 -54.96 -0.24 -9.14 16 19 C 0.56 8.60 7.73 -12.64 -0.10 8.50 16 20 O -0.52 -9.91 15.99 5.24 0.08 -9.82 16 21 C -0.12 -1.60 6.05 -102.74 -0.62 -2.22 16 22 C -0.03 -0.26 9.50 -39.20 -0.37 -0.64 16 23 C -0.17 -1.46 9.83 -40.19 -0.39 -1.85 16 24 C -0.01 -0.09 10.02 -39.46 -0.40 -0.49 16 25 C -0.22 -2.24 6.34 -105.21 -0.67 -2.91 16 26 C 0.09 0.62 12.08 -16.59 -0.20 0.41 16 27 N -0.43 -3.66 7.18 30.86 0.22 -3.44 16 28 H 0.44 2.01 8.96 -182.68 -1.64 0.37 16 29 N -0.27 -3.88 12.24 34.35 0.42 -3.46 16 30 C 0.14 1.94 7.27 -80.98 -0.59 1.35 16 31 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.35 5.79 7.28 -39.29 -0.29 5.50 16 37 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 38 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.39 9.48 7.90 -40.82 -0.32 9.16 16 40 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 41 H 0.39 3.91 6.20 -40.82 -0.25 3.66 16 42 H 0.13 1.02 6.38 -52.48 -0.33 0.69 16 43 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 44 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 45 H 0.19 0.32 8.06 -52.48 -0.42 -0.10 16 LS Contribution 387.40 15.07 5.84 5.84 Total: -1.00 -39.20 387.40 -9.17 -48.37 By element: Atomic # 1 Polarization: 22.00 SS G_CDS: -6.97 Total: 15.03 kcal Atomic # 6 Polarization: 9.80 SS G_CDS: -3.56 Total: 6.24 kcal Atomic # 7 Polarization: -66.24 SS G_CDS: 0.37 Total: -65.87 kcal Atomic # 8 Polarization: -25.94 SS G_CDS: 0.17 Total: -25.77 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -39.20 -9.17 -48.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268697517.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.049 kcal (2) G-P(sol) polarization free energy of solvation -39.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.367 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds