Wall clock time and date at job start Wed Apr 1 2020 04:42:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.46824 * 2 1 4 4 C 1.52995 * 109.46913 * 120.00027 * 2 1 3 5 5 N 1.46901 * 109.47271 * 175.00040 * 4 2 1 6 6 C 1.46902 * 111.00496 * 180.02562 * 5 4 2 7 7 C 1.50691 * 109.47385 * 179.97438 * 6 5 4 8 8 O 1.21296 * 120.00049 * 359.97438 * 7 6 5 9 9 N 1.34770 * 120.00328 * 179.97438 * 7 6 5 10 10 C 1.37101 * 120.00472 * 179.97438 * 9 7 6 11 11 H 1.08003 * 119.99971 * 0.02562 * 10 9 7 12 12 C 1.38951 * 120.00252 * 180.02562 * 10 9 7 13 13 N 1.31412 * 119.99724 * 0.02562 * 12 10 9 14 14 Si 1.86796 * 119.99952 * 180.02562 * 12 10 9 15 15 H 1.48494 * 109.47352 * 59.99800 * 14 12 10 16 16 H 1.48505 * 109.47095 * 180.02562 * 14 12 10 17 17 H 1.48498 * 109.47025 * 299.99315 * 14 12 10 18 18 N 1.46502 * 109.46802 * 239.99917 * 2 1 3 19 19 C 1.34767 * 120.00131 * 85.00248 * 18 2 1 20 20 O 1.21642 * 119.99948 * 359.97438 * 19 18 2 21 21 C 1.47169 * 120.00271 * 179.97438 * 19 18 2 22 22 C 1.38595 * 120.72323 * 359.97438 * 21 19 18 23 23 C 1.38923 * 121.36255 * 179.72802 * 22 21 19 24 24 C 1.35823 * 122.59802 * 359.97438 * 23 22 21 25 25 C 1.40842 * 120.55807 * 0.02562 * 24 23 22 26 26 C 1.38423 * 134.90199 * 179.97438 * 25 24 23 27 27 N 1.33884 * 107.84880 * 180.02562 * 26 25 24 28 28 H 0.97000 * 125.02184 * 180.02562 * 27 26 25 29 29 N 1.39986 * 109.96055 * 359.97438 * 27 26 25 30 30 C 1.31474 * 109.01699 * 0.02562 * 29 27 26 31 31 H 1.09004 * 109.47393 * 299.99903 * 1 2 3 32 32 H 1.08999 * 109.46959 * 60.00068 * 1 2 3 33 33 H 1.09004 * 109.47367 * 180.02562 * 1 2 3 34 34 H 1.09004 * 109.47324 * 294.99612 * 4 2 1 35 35 H 1.09002 * 109.47704 * 55.00166 * 4 2 1 36 36 H 1.00902 * 110.99539 * 303.95043 * 5 4 2 37 37 H 1.09000 * 109.46475 * 300.00010 * 6 5 4 38 38 H 1.09005 * 109.47212 * 59.99394 * 6 5 4 39 39 H 0.97006 * 119.99886 * 0.02562 * 9 7 6 40 40 H 0.97004 * 119.99731 * 180.02562 * 13 12 10 41 41 H 0.97001 * 119.99464 * 264.99432 * 18 2 1 42 42 H 1.08003 * 119.31751 * 359.74743 * 22 21 19 43 43 H 1.08000 * 118.70135 * 179.97438 * 23 22 21 44 44 H 1.08001 * 119.72450 * 179.97438 * 24 23 22 45 45 H 1.08005 * 126.07331 * 0.06121 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2492 5 7 3.5040 -0.8267 1.1905 6 6 4.0303 -1.5159 2.3762 7 6 5.5314 -1.6055 2.2802 8 8 6.1065 -1.1413 1.3184 9 7 6.2352 -2.2014 3.2630 10 6 7.6010 -2.2834 3.1755 11 1 8.1130 -1.8700 2.3191 12 6 8.3265 -2.8982 4.1886 13 7 7.7035 -3.4016 5.2304 14 14 10.1873 -3.0092 4.0695 15 1 10.7612 -1.6416 3.9966 16 1 10.7193 -3.7066 5.2679 17 1 10.5609 -3.7686 2.8493 18 7 2.0183 -0.6906 -1.1962 19 6 2.1470 -0.0184 -2.3571 20 8 1.8573 1.1618 -2.4118 21 6 2.6380 -0.7120 -3.5586 22 6 2.9729 -2.0561 -3.5131 23 6 3.4323 -2.7254 -4.6405 24 6 3.5808 -2.1143 -5.8444 25 6 3.2682 -0.7497 -5.9982 26 6 3.3046 0.1485 -7.0508 27 7 2.8832 1.3341 -6.5934 28 1 2.8101 2.1420 -7.1253 29 7 2.5624 1.2354 -5.2343 30 6 2.7776 0.0024 -4.8318 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0277 0.0005 34 1 1.7516 -0.1583 2.1370 35 1 1.6054 -1.7198 1.2952 36 1 3.7995 -1.2885 0.3434 37 1 3.7556 -0.9588 3.2719 38 1 3.6094 -2.5200 2.4295 39 1 5.7754 -2.5730 4.0321 40 1 8.2100 -3.8305 5.9378 41 1 2.2490 -1.6318 -1.1525 42 1 2.8743 -2.5945 -2.5820 43 1 3.6814 -3.7729 -4.5563 44 1 3.9423 -2.6794 -6.6908 45 1 3.6169 -0.0687 -8.0616 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268697517.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:42:54 Heat of formation + Delta-G solvation = -3.023919 kcal Electronic energy + Delta-G solvation = -28938.304345 eV Core-core repulsion = 24763.097573 eV Total energy + Delta-G solvation = -4175.206772 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.20276 -40.79867 -40.09551 -37.99628 -37.62639 -36.01419 -35.06514 -33.30923 -33.19395 -32.39459 -31.22464 -29.70949 -28.96204 -26.70534 -25.74449 -24.68718 -23.60871 -22.79701 -21.67944 -21.17957 -20.91818 -19.89650 -19.14123 -18.52997 -17.93215 -17.54972 -17.23230 -16.85984 -16.37847 -16.24654 -16.02498 -15.97147 -15.60613 -15.37329 -15.19024 -15.01700 -14.94325 -14.35395 -14.09936 -14.02748 -13.54159 -13.34499 -13.08734 -13.03988 -13.02285 -12.79051 -12.74482 -12.64266 -12.61108 -12.42024 -12.11762 -11.93465 -11.54209 -11.49456 -11.27456 -10.76860 -10.35780 -10.11536 -10.00345 -9.84714 -9.30271 -8.63827 -8.45536 -5.94071 -0.62168 0.85325 1.18143 1.40352 1.42274 1.53077 1.82533 2.06429 2.07180 2.19986 2.30161 2.90050 2.93438 3.21849 3.29042 3.50340 3.59919 3.85227 3.96642 4.13695 4.21526 4.24302 4.28940 4.38278 4.44735 4.50531 4.51911 4.60920 4.66890 4.68260 4.76481 4.79627 4.94073 5.10707 5.26722 5.29056 5.41360 5.41781 5.55121 5.56250 5.88675 5.89680 6.10827 6.27565 6.38266 6.54849 6.61886 6.64763 7.14061 7.30883 7.57818 8.13889 8.71549 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.011339 B = 0.002333 C = 0.002055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2468.712332 B =11998.438422 C =13624.618481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.147 3.853 3 H 0.060 0.940 4 C 0.059 3.941 5 N -0.690 5.690 6 C 0.065 3.935 7 C 0.435 3.565 8 O -0.625 6.625 9 N -0.572 5.572 10 C -0.334 4.334 11 H 0.076 0.924 12 C -0.012 4.012 13 N -0.919 5.919 14 Si 0.991 3.009 15 H -0.275 1.275 16 H -0.269 1.269 17 H -0.270 1.270 18 N -0.711 5.711 19 C 0.557 3.443 20 O -0.578 6.578 21 C -0.178 4.178 22 C -0.005 4.005 23 C -0.195 4.195 24 C 0.014 3.986 25 C -0.254 4.254 26 C 0.134 3.866 27 N -0.424 5.424 28 H 0.459 0.541 29 N -0.345 5.345 30 C 0.110 3.890 31 H 0.084 0.916 32 H 0.039 0.961 33 H 0.077 0.923 34 H 0.100 0.900 35 H 0.064 0.936 36 H 0.343 0.657 37 H 0.106 0.894 38 H 0.076 0.924 39 H 0.397 0.603 40 H 0.278 0.722 41 H 0.406 0.594 42 H 0.149 0.851 43 H 0.159 0.841 44 H 0.171 0.829 45 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.947 -2.539 -22.578 27.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.042 3.958 3 H 0.079 0.921 4 C -0.070 4.070 5 N -0.323 5.323 6 C -0.067 4.067 7 C 0.223 3.777 8 O -0.512 6.512 9 N -0.209 5.209 10 C -0.464 4.464 11 H 0.094 0.906 12 C -0.212 4.212 13 N -0.560 5.560 14 Si 0.815 3.185 15 H -0.201 1.201 16 H -0.194 1.194 17 H -0.195 1.195 18 N -0.364 5.364 19 C 0.347 3.653 20 O -0.458 6.458 21 C -0.185 4.185 22 C -0.027 4.027 23 C -0.215 4.215 24 C -0.006 4.006 25 C -0.264 4.264 26 C -0.025 4.025 27 N -0.125 5.125 28 H 0.306 0.694 29 N -0.172 5.172 30 C -0.048 4.048 31 H 0.103 0.897 32 H 0.058 0.942 33 H 0.096 0.904 34 H 0.118 0.882 35 H 0.082 0.918 36 H 0.162 0.838 37 H 0.124 0.876 38 H 0.094 0.906 39 H 0.231 0.769 40 H 0.087 0.913 41 H 0.243 0.757 42 H 0.167 0.833 43 H 0.177 0.823 44 H 0.188 0.812 45 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges -15.026 0.377 -22.395 26.972 hybrid contribution 0.833 -1.370 0.075 1.605 sum -14.193 -0.993 -22.319 26.469 Atomic orbital electron populations 1.22051 0.93139 1.03262 1.02436 1.20983 0.94778 0.96774 0.83254 0.92145 1.22351 0.86168 1.00701 0.97818 1.59972 1.10323 1.57773 1.04264 1.21557 0.90155 0.99263 0.95691 1.20950 0.90773 0.82155 0.83822 1.90511 1.72881 1.52756 1.35043 1.41912 1.06811 1.51602 1.20609 1.19606 0.83166 1.36904 1.06721 0.90557 1.26013 1.04810 0.95830 0.94520 1.69662 1.38303 1.38406 1.09614 0.85017 0.76923 0.78503 0.78071 1.20053 1.19363 1.19513 1.45802 1.67434 1.14128 1.09034 1.18307 0.77020 0.86149 0.83802 1.90769 1.52086 1.17298 1.85682 1.19893 1.13474 0.94800 0.90289 1.21604 0.89837 0.90995 1.00289 1.20736 1.06159 1.02297 0.92261 1.20844 0.90732 0.90375 0.98671 1.20143 1.15931 0.97637 0.92701 1.23765 0.94007 0.84011 1.00761 1.46614 1.45711 1.12048 1.08101 0.69397 1.77757 1.29157 1.18993 0.91307 1.21890 0.97010 0.91147 0.94728 0.89739 0.94155 0.90428 0.88157 0.91796 0.83815 0.87636 0.90615 0.76861 0.91274 0.75676 0.83310 0.82321 0.81190 0.73209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.04 9.48 71.98 0.68 -2.35 16 2 C 0.15 3.72 2.88 44.99 0.13 3.85 16 3 H 0.06 2.00 7.58 -2.39 -0.02 1.98 16 4 C 0.06 1.31 5.30 86.30 0.46 1.77 16 5 N -0.69 -22.07 6.12 -517.94 -3.17 -25.24 16 6 C 0.07 2.19 6.17 85.55 0.53 2.72 16 7 C 0.44 20.86 7.82 87.66 0.69 21.54 16 8 O -0.63 -35.53 15.78 -3.08 -0.05 -35.58 16 9 N -0.57 -29.37 5.29 -306.99 -1.62 -31.00 16 10 C -0.33 -19.13 9.68 84.04 0.81 -18.32 16 11 H 0.08 4.68 7.16 -2.91 -0.02 4.66 16 12 C -0.01 -0.64 5.50 84.93 0.47 -0.17 16 13 N -0.92 -49.46 13.05 21.66 0.28 -49.17 16 14 Si 0.99 43.12 29.55 68.60 2.03 45.15 16 15 H -0.28 -11.98 7.11 99.48 0.71 -11.28 16 16 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 17 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 18 N -0.71 -18.46 4.31 -446.06 -1.92 -20.38 16 19 C 0.56 18.68 7.73 86.59 0.67 19.35 16 20 O -0.58 -24.54 15.99 -4.16 -0.07 -24.60 16 21 C -0.18 -5.20 6.05 -18.65 -0.11 -5.31 16 22 C 0.00 -0.10 9.50 22.52 0.21 0.11 16 23 C -0.20 -2.98 9.83 21.87 0.21 -2.76 16 24 C 0.01 0.19 10.02 22.35 0.22 0.41 16 25 C -0.25 -4.76 6.34 -20.24 -0.13 -4.89 16 26 C 0.13 1.43 12.08 84.42 1.02 2.45 16 27 N -0.42 -7.02 7.18 -56.29 -0.40 -7.42 16 28 H 0.46 3.86 8.96 -213.39 -1.91 1.95 16 29 N -0.35 -10.69 12.24 -45.22 -0.55 -11.24 16 30 C 0.11 3.25 7.27 43.75 0.32 3.57 16 31 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 35 H 0.06 1.08 8.14 -2.39 -0.02 1.07 16 36 H 0.34 11.45 7.28 -89.69 -0.65 10.79 16 37 H 0.11 3.18 8.14 -2.39 -0.02 3.16 16 38 H 0.08 2.08 8.14 -2.38 -0.02 2.06 16 39 H 0.40 19.18 7.90 -92.70 -0.73 18.45 16 40 H 0.28 14.01 8.31 -92.71 -0.77 13.24 16 41 H 0.41 8.14 6.20 -92.71 -0.57 7.56 16 42 H 0.15 2.24 6.38 -2.91 -0.02 2.22 16 43 H 0.16 1.43 8.06 -2.91 -0.02 1.40 16 44 H 0.17 0.75 8.06 -2.91 -0.02 0.72 16 45 H 0.25 -0.68 8.06 -2.91 -0.02 -0.70 16 Total: -1.00 -93.61 387.40 -2.08 -95.69 By element: Atomic # 1 Polarization: 44.61 SS G_CDS: -2.79 Total: 41.82 kcal Atomic # 6 Polarization: 15.79 SS G_CDS: 6.18 Total: 21.97 kcal Atomic # 7 Polarization: -137.07 SS G_CDS: -7.39 Total: -144.45 kcal Atomic # 8 Polarization: -60.07 SS G_CDS: -0.12 Total: -60.18 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.15 kcal Total: -93.61 -2.08 -95.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268697517.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.668 kcal (2) G-P(sol) polarization free energy of solvation -93.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds