Wall clock time and date at job start Wed Apr 1 2020 03:07:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 N 1.46506 * 109.47289 * 119.99984 * 2 1 3 5 5 C 1.34775 * 119.99693 * 275.00198 * 4 2 1 6 6 O 1.21607 * 120.00077 * 359.97438 * 5 4 2 7 7 C 1.47376 * 119.99680 * 179.97438 * 5 4 2 8 8 C 1.38130 * 126.46846 * 359.68432 * 7 5 4 9 9 N 1.34438 * 108.38794 * 179.86323 * 8 7 5 10 10 H 0.96999 * 125.38705 * 180.16976 * 9 8 7 11 11 C 1.37707 * 109.21665 * 0.40832 * 9 8 7 12 12 C 1.43205 * 125.84068 * 179.71121 * 11 9 8 13 13 N 8.52039 * 105.95832 * 96.24740 * 2 1 3 14 14 C 1.36356 * 108.31673 * 359.74518 * 11 9 8 15 15 C 1.52999 * 109.47317 * 239.99669 * 2 1 3 16 16 C 1.53930 * 113.73563 * 156.72766 * 15 2 1 17 17 N 1.47961 * 86.18339 * 221.92310 * 16 15 2 18 18 C 1.46897 * 111.00105 * 137.57957 * 17 16 15 19 19 C 1.50708 * 109.47061 * 90.64502 * 18 17 16 20 20 O 1.21292 * 119.99471 * 359.97438 * 19 18 17 21 21 N 1.34774 * 120.00027 * 179.97438 * 19 18 17 22 22 C 1.37100 * 119.99683 * 179.97438 * 21 19 18 23 23 H 1.07992 * 120.00386 * 0.02562 * 22 21 19 24 24 C 1.38954 * 119.99657 * 180.02562 * 22 21 19 25 25 N 1.31409 * 120.00011 * 0.02562 * 24 22 21 26 26 Si 1.86795 * 119.99837 * 180.02562 * 24 22 21 27 27 H 1.48506 * 109.47290 * 90.00199 * 26 24 22 28 28 H 1.48498 * 109.47299 * 210.00182 * 26 24 22 29 29 H 1.48499 * 109.47392 * 330.00126 * 26 24 22 30 30 C 1.47963 * 90.76057 * 24.68905 * 17 16 15 31 31 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 32 32 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 33 33 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 34 34 H 0.97000 * 120.00117 * 94.99845 * 4 2 1 35 35 H 1.08002 * 125.80553 * 359.97438 * 8 7 5 36 36 H 1.08003 * 126.49120 * 179.97438 * 14 11 9 37 37 H 1.08997 * 112.94014 * 288.43706 * 15 2 1 38 38 H 1.08999 * 113.76042 * 336.24067 * 16 15 2 39 39 H 1.09003 * 113.75951 * 107.61073 * 16 15 2 40 40 H 1.08998 * 109.47423 * 210.63947 * 18 17 16 41 41 H 1.08999 * 109.47386 * 330.64456 * 18 17 16 42 42 H 0.97004 * 120.00086 * 0.02562 * 21 19 18 43 43 H 0.96999 * 120.00309 * 179.97438 * 25 24 22 44 44 H 1.09002 * 113.76056 * 220.99334 * 30 17 16 45 45 H 1.09007 * 113.75691 * 89.62863 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1470 -0.0182 2.3571 6 8 1.8582 1.1618 2.4116 7 6 2.6378 -0.7131 3.5606 8 6 2.9965 -2.0439 3.6513 9 7 3.3929 -2.2913 4.9119 10 1 3.6996 -3.1486 5.2462 11 6 3.2894 -1.1362 5.6545 12 6 3.6138 -0.9999 7.0426 13 7 3.8726 -0.8915 8.1434 14 6 2.8245 -0.1447 4.8421 15 6 2.0400 -0.7213 -1.2492 16 6 3.4670 -0.3155 -1.6597 17 7 2.9605 -0.3148 -3.0500 18 6 3.4682 0.8452 -3.7946 19 6 4.7627 0.4788 -4.4739 20 8 5.2176 -0.6387 -4.3494 21 7 5.4147 1.3927 -5.2196 22 6 6.5925 1.0594 -5.8371 23 1 6.9977 0.0645 -5.7263 24 6 7.2650 2.0018 -6.6055 25 7 6.7723 3.2126 -6.7399 26 14 8.8694 1.5475 -7.4474 27 1 8.5830 1.0119 -8.8025 28 1 9.7267 2.7545 -7.5632 29 1 9.5740 0.5150 -6.6458 30 6 1.5822 -0.0740 -2.5687 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 0.5139 0.8900 33 1 -0.3634 -1.0277 0.0005 34 1 2.2491 -1.6318 1.1527 35 1 2.9657 -2.7629 2.8460 36 1 2.6345 0.8804 5.1240 37 1 1.8823 -1.7992 -1.2115 38 1 3.7640 0.6696 -1.3001 39 1 4.2152 -1.0840 -1.4654 40 1 2.7363 1.1441 -4.5449 41 1 3.6408 1.6721 -3.1057 42 1 5.0510 2.2864 -5.3188 43 1 7.2419 3.8706 -7.2760 44 1 0.8245 -0.6494 -3.1005 45 1 1.3280 0.9819 -2.4748 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001276367578.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:44 Heat of formation + Delta-G solvation = 42.500115 kcal Electronic energy + Delta-G solvation = -28355.128246 eV Core-core repulsion = 24181.895545 eV Total energy + Delta-G solvation = -4173.232702 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 5.99 seconds Orbital eigenvalues (eV) -42.04367 -40.41735 -39.16600 -37.72615 -36.95623 -35.37998 -33.85105 -32.36779 -31.53575 -31.17123 -30.11368 -29.26023 -26.29709 -25.54274 -24.48564 -23.51341 -23.09249 -21.42453 -20.60398 -20.42807 -19.34446 -19.03523 -17.84274 -16.92814 -16.76029 -16.21698 -16.03867 -15.68664 -15.23613 -15.00394 -14.91048 -14.68735 -14.60742 -14.28602 -14.00808 -13.71200 -13.57761 -13.52913 -13.32088 -13.14991 -13.02186 -12.78531 -12.66333 -12.53772 -12.30103 -11.85099 -11.59809 -11.35927 -11.06195 -10.93268 -10.67588 -10.63818 -10.37642 -10.19341 -10.12420 -9.73359 -9.46954 -9.29939 -8.94526 -8.67993 -8.13667 -7.92641 -6.38530 -3.79194 0.80551 1.35446 1.72641 2.58906 2.86324 2.90086 3.19605 3.24726 3.27878 3.33599 3.49788 3.91760 3.97007 4.22809 4.29112 4.32113 4.41139 4.56691 4.68264 4.97388 5.03845 5.10449 5.22764 5.23728 5.26256 5.37063 5.41260 5.46461 5.55263 5.67188 5.71848 5.77793 5.79486 5.90582 5.94443 6.03003 6.04679 6.16087 6.31347 6.35929 6.52458 6.61609 6.90731 7.20205 7.32721 7.57902 8.07942 8.09494 8.65819 9.21757 9.58603 10.11082 10.79390 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.013389 B = 0.001847 C = 0.001707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2090.759877 B =15158.126604 C =16397.982010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.152 3.848 3 H 0.090 0.910 4 N -0.720 5.720 5 C 0.589 3.411 6 O -0.539 6.539 7 C -0.223 4.223 8 C 0.085 3.915 9 N -0.519 5.519 10 H 0.427 0.573 11 C 0.044 3.956 12 C 0.278 3.722 13 N -0.403 5.403 14 C -0.047 4.047 15 C -0.125 4.125 16 C 0.018 3.982 17 N -0.450 5.450 18 C 0.010 3.990 19 C 0.447 3.553 20 O -0.577 6.577 21 N -0.568 5.568 22 C -0.298 4.298 23 H 0.102 0.898 24 C 0.021 3.979 25 N -0.903 5.903 26 Si 0.929 3.071 27 H -0.278 1.278 28 H -0.284 1.284 29 H -0.270 1.270 30 C 0.010 3.990 31 H 0.068 0.932 32 H 0.060 0.940 33 H 0.057 0.943 34 H 0.397 0.603 35 H 0.188 0.812 36 H 0.161 0.839 37 H 0.103 0.897 38 H 0.068 0.932 39 H 0.090 0.910 40 H 0.087 0.913 41 H 0.058 0.942 42 H 0.391 0.609 43 H 0.271 0.729 44 H 0.090 0.910 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.619 -9.958 20.088 26.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.047 3.953 3 H 0.108 0.892 4 N -0.371 5.371 5 C 0.377 3.623 6 O -0.416 6.416 7 C -0.233 4.233 8 C -0.057 4.057 9 N -0.113 5.113 10 H 0.266 0.734 11 C -0.068 4.068 12 C -0.038 4.038 13 N -0.079 5.079 14 C -0.075 4.075 15 C -0.144 4.144 16 C -0.111 4.111 17 N -0.172 5.172 18 C -0.122 4.122 19 C 0.232 3.768 20 O -0.460 6.460 21 N -0.205 5.205 22 C -0.428 4.428 23 H 0.120 0.880 24 C -0.180 4.180 25 N -0.544 5.544 26 Si 0.757 3.243 27 H -0.204 1.204 28 H -0.210 1.210 29 H -0.195 1.195 30 C -0.120 4.120 31 H 0.086 0.914 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.232 0.768 35 H 0.205 0.795 36 H 0.179 0.821 37 H 0.122 0.878 38 H 0.087 0.913 39 H 0.108 0.892 40 H 0.105 0.895 41 H 0.076 0.924 42 H 0.224 0.776 43 H 0.081 0.919 44 H 0.109 0.891 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -12.821 -10.190 21.435 26.975 hybrid contribution 0.686 0.273 -0.502 0.893 sum -12.135 -9.916 20.933 26.149 Atomic orbital electron populations 1.22146 0.94953 1.02209 1.02673 1.21055 0.94159 0.97315 0.82777 0.89163 1.45869 1.67906 1.13861 1.09492 1.17304 0.76955 0.86065 0.81981 1.90805 1.50500 1.15445 1.84875 1.19653 1.14644 0.93616 0.95376 1.22543 0.99146 0.97264 0.86740 1.41579 1.49839 1.10951 1.08883 0.73402 1.15165 1.17241 0.88470 0.85897 1.24277 0.93402 0.95149 0.90927 1.81348 1.09793 1.05579 1.11215 1.21121 0.97191 0.98705 0.90498 1.23315 0.96992 1.01100 0.93005 1.23989 0.96172 1.01603 0.89365 1.68376 1.01916 1.36052 1.10852 1.22481 0.98006 0.92752 0.98997 1.19703 0.86566 0.86356 0.84181 1.90510 1.68802 1.21484 1.65211 1.41882 1.21730 1.12999 1.43869 1.19687 0.98082 0.99409 1.25575 0.87997 1.25248 0.99845 0.95003 0.97917 1.69610 1.40246 1.03795 1.40777 0.85868 0.81135 0.77854 0.79476 1.20434 1.20971 1.19481 1.23964 0.94202 0.99982 0.93857 0.91355 0.92077 0.92379 0.76838 0.79463 0.82118 0.87834 0.91338 0.89182 0.89453 0.92407 0.77553 0.91930 0.89133 0.91138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.22 9.29 37.16 0.35 -0.88 16 2 C 0.15 1.29 2.42 -67.93 -0.16 1.13 16 3 H 0.09 0.98 7.37 -51.93 -0.38 0.60 16 4 N -0.72 -5.12 5.07 -54.90 -0.28 -5.40 16 5 C 0.59 5.55 7.78 -12.54 -0.10 5.45 16 6 O -0.54 -7.37 16.58 5.27 0.09 -7.28 16 7 C -0.22 -1.51 6.13 -105.00 -0.64 -2.16 16 8 C 0.09 0.26 11.43 -16.45 -0.19 0.07 16 9 N -0.52 -1.43 6.02 -10.28 -0.06 -1.49 16 10 H 0.43 -0.09 8.96 -40.82 -0.37 -0.46 16 11 C 0.04 0.25 6.90 -83.98 -0.58 -0.33 16 12 C 0.28 2.10 15.88 -22.47 -0.36 1.74 16 13 N -0.40 -4.03 18.54 41.84 0.78 -3.25 16 14 C -0.05 -0.33 10.59 -39.05 -0.41 -0.75 16 15 C -0.12 -1.15 3.49 -89.69 -0.31 -1.46 16 16 C 0.02 0.23 7.51 -2.77 -0.02 0.21 16 17 N -0.45 -7.03 5.65 -239.72 -1.35 -8.38 16 18 C 0.01 0.17 5.28 -4.97 -0.03 0.14 16 19 C 0.45 10.63 7.83 -10.98 -0.09 10.55 16 20 O -0.58 -15.81 16.01 5.55 0.09 -15.72 16 21 N -0.57 -14.50 5.29 -10.96 -0.06 -14.56 16 22 C -0.30 -8.37 9.68 -14.93 -0.14 -8.51 16 23 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 24 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 25 N -0.90 -24.70 13.05 55.50 0.72 -23.98 16 26 Si 0.93 21.15 29.55 -169.99 -5.02 16.13 16 27 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 28 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 29 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 30 C 0.01 0.10 6.57 -2.76 -0.02 0.08 16 31 H 0.07 0.48 7.43 -51.93 -0.39 0.10 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.40 1.61 7.51 -40.82 -0.31 1.31 16 35 H 0.19 -0.14 7.44 -52.49 -0.39 -0.53 16 36 H 0.16 1.15 8.06 -52.48 -0.42 0.73 16 37 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.07 0.92 7.29 -51.93 -0.38 0.54 16 39 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 40 H 0.09 1.39 8.08 -51.93 -0.42 0.97 16 41 H 0.06 0.92 7.38 -51.93 -0.38 0.54 16 42 H 0.39 9.55 7.90 -40.82 -0.32 9.23 16 43 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 44 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 45 H 0.07 0.69 7.85 -51.93 -0.41 0.29 16 LS Contribution 394.78 15.07 5.95 5.95 Total: -1.00 -37.57 394.78 -7.74 -45.31 By element: Atomic # 1 Polarization: 12.69 SS G_CDS: -5.79 Total: 6.90 kcal Atomic # 6 Polarization: 8.57 SS G_CDS: -2.80 Total: 5.76 kcal Atomic # 7 Polarization: -56.80 SS G_CDS: -0.25 Total: -57.06 kcal Atomic # 8 Polarization: -23.18 SS G_CDS: 0.18 Total: -23.00 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -37.57 -7.74 -45.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276367578.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.811 kcal (2) G-P(sol) polarization free energy of solvation -37.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.311 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.99 seconds