Wall clock time and date at job start Wed Apr 1 2020 03:07:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 N 1.46506 * 109.47289 * 119.99984 * 2 1 3 5 5 C 1.34775 * 119.99693 * 275.00198 * 4 2 1 6 6 O 1.21607 * 120.00077 * 359.97438 * 5 4 2 7 7 C 1.47376 * 119.99680 * 179.97438 * 5 4 2 8 8 C 1.38130 * 126.46846 * 359.68432 * 7 5 4 9 9 N 1.34438 * 108.38794 * 179.86323 * 8 7 5 10 10 H 0.96999 * 125.38705 * 180.16976 * 9 8 7 11 11 C 1.37707 * 109.21665 * 0.40832 * 9 8 7 12 12 C 1.43205 * 125.84068 * 179.71121 * 11 9 8 13 13 N 8.52039 * 105.95832 * 96.24740 * 2 1 3 14 14 C 1.36356 * 108.31673 * 359.74518 * 11 9 8 15 15 C 1.52999 * 109.47317 * 239.99669 * 2 1 3 16 16 C 1.53930 * 113.73563 * 156.72766 * 15 2 1 17 17 N 1.47961 * 86.18339 * 221.92310 * 16 15 2 18 18 C 1.46897 * 111.00105 * 137.57957 * 17 16 15 19 19 C 1.50708 * 109.47061 * 90.64502 * 18 17 16 20 20 O 1.21292 * 119.99471 * 359.97438 * 19 18 17 21 21 N 1.34774 * 120.00027 * 179.97438 * 19 18 17 22 22 C 1.37100 * 119.99683 * 179.97438 * 21 19 18 23 23 H 1.07992 * 120.00386 * 0.02562 * 22 21 19 24 24 C 1.38954 * 119.99657 * 180.02562 * 22 21 19 25 25 N 1.31409 * 120.00011 * 0.02562 * 24 22 21 26 26 Si 1.86795 * 119.99837 * 180.02562 * 24 22 21 27 27 H 1.48506 * 109.47290 * 90.00199 * 26 24 22 28 28 H 1.48498 * 109.47299 * 210.00182 * 26 24 22 29 29 H 1.48499 * 109.47392 * 330.00126 * 26 24 22 30 30 C 1.47963 * 90.76057 * 24.68905 * 17 16 15 31 31 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 32 32 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 33 33 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 34 34 H 0.97000 * 120.00117 * 94.99845 * 4 2 1 35 35 H 1.08002 * 125.80553 * 359.97438 * 8 7 5 36 36 H 1.08003 * 126.49120 * 179.97438 * 14 11 9 37 37 H 1.08997 * 112.94014 * 288.43706 * 15 2 1 38 38 H 1.08999 * 113.76042 * 336.24067 * 16 15 2 39 39 H 1.09003 * 113.75951 * 107.61073 * 16 15 2 40 40 H 1.08998 * 109.47423 * 210.63947 * 18 17 16 41 41 H 1.08999 * 109.47386 * 330.64456 * 18 17 16 42 42 H 0.97004 * 120.00086 * 0.02562 * 21 19 18 43 43 H 0.96999 * 120.00309 * 179.97438 * 25 24 22 44 44 H 1.09002 * 113.76056 * 220.99334 * 30 17 16 45 45 H 1.09007 * 113.75691 * 89.62863 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1470 -0.0182 2.3571 6 8 1.8582 1.1618 2.4116 7 6 2.6378 -0.7131 3.5606 8 6 2.9965 -2.0439 3.6513 9 7 3.3929 -2.2913 4.9119 10 1 3.6996 -3.1486 5.2462 11 6 3.2894 -1.1362 5.6545 12 6 3.6138 -0.9999 7.0426 13 7 3.8726 -0.8915 8.1434 14 6 2.8245 -0.1447 4.8421 15 6 2.0400 -0.7213 -1.2492 16 6 3.4670 -0.3155 -1.6597 17 7 2.9605 -0.3148 -3.0500 18 6 3.4682 0.8452 -3.7946 19 6 4.7627 0.4788 -4.4739 20 8 5.2176 -0.6387 -4.3494 21 7 5.4147 1.3927 -5.2196 22 6 6.5925 1.0594 -5.8371 23 1 6.9977 0.0645 -5.7263 24 6 7.2650 2.0018 -6.6055 25 7 6.7723 3.2126 -6.7399 26 14 8.8694 1.5475 -7.4474 27 1 8.5830 1.0119 -8.8025 28 1 9.7267 2.7545 -7.5632 29 1 9.5740 0.5150 -6.6458 30 6 1.5822 -0.0740 -2.5687 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 0.5139 0.8900 33 1 -0.3634 -1.0277 0.0005 34 1 2.2491 -1.6318 1.1527 35 1 2.9657 -2.7629 2.8460 36 1 2.6345 0.8804 5.1240 37 1 1.8823 -1.7992 -1.2115 38 1 3.7640 0.6696 -1.3001 39 1 4.2152 -1.0840 -1.4654 40 1 2.7363 1.1441 -4.5449 41 1 3.6408 1.6721 -3.1057 42 1 5.0510 2.2864 -5.3188 43 1 7.2419 3.8706 -7.2760 44 1 0.8245 -0.6494 -3.1005 45 1 1.3280 0.9819 -2.4748 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001276367578.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:39 Heat of formation + Delta-G solvation = 11.712356 kcal Electronic energy + Delta-G solvation = -28356.463304 eV Core-core repulsion = 24181.895545 eV Total energy + Delta-G solvation = -4174.567759 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 3.80 seconds Orbital eigenvalues (eV) -42.47178 -41.39203 -40.11744 -39.42136 -37.61720 -36.25459 -35.84257 -33.30329 -32.97190 -32.10822 -30.92103 -30.09680 -27.53085 -26.85532 -25.65347 -24.48316 -23.53798 -22.31996 -21.16046 -21.01104 -20.93048 -20.01600 -19.80564 -17.77232 -17.56959 -17.44251 -16.76309 -16.55299 -16.42145 -16.23198 -16.12004 -15.72608 -15.46752 -15.31103 -15.19796 -14.88200 -14.63136 -14.22609 -14.13379 -14.02318 -13.91340 -13.69464 -13.60501 -13.49719 -13.27165 -13.23267 -12.95447 -12.61253 -12.59275 -12.40560 -12.12331 -11.75153 -11.69350 -11.54688 -11.47223 -10.91895 -10.33516 -10.24631 -9.98973 -9.96951 -9.54470 -9.36518 -8.44792 -5.93536 0.36616 0.82635 1.22681 1.38941 1.42060 1.54956 2.08739 2.11344 2.27554 2.29368 2.31055 2.63800 2.85160 3.05763 3.21656 3.39105 3.54676 3.75168 3.88160 4.13795 4.19527 4.25489 4.28183 4.31476 4.41254 4.52731 4.56419 4.58145 4.61369 4.70523 4.86031 4.91418 4.93534 4.96212 5.13399 5.32013 5.41297 5.41752 5.44166 5.52313 5.57571 5.68820 5.94520 6.13921 6.24978 6.41008 6.62939 6.77757 7.15106 7.45677 7.59307 8.15565 8.72704 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.013389 B = 0.001847 C = 0.001707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2090.759877 B =15158.126604 C =16397.982010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.157 3.843 3 H 0.064 0.936 4 N -0.707 5.707 5 C 0.588 3.412 6 O -0.593 6.593 7 C -0.258 4.258 8 C 0.130 3.870 9 N -0.500 5.500 10 H 0.445 0.555 11 C 0.036 3.964 12 C 0.302 3.698 13 N -0.451 5.451 14 C -0.060 4.060 15 C -0.094 4.094 16 C 0.009 3.991 17 N -0.482 5.482 18 C 0.023 3.977 19 C 0.442 3.558 20 O -0.617 6.617 21 N -0.578 5.578 22 C -0.333 4.333 23 H 0.078 0.922 24 C -0.015 4.015 25 N -0.922 5.922 26 Si 0.993 3.007 27 H -0.270 1.270 28 H -0.271 1.271 29 H -0.273 1.273 30 C 0.013 3.987 31 H 0.074 0.926 32 H 0.043 0.957 33 H 0.077 0.923 34 H 0.416 0.584 35 H 0.236 0.764 36 H 0.147 0.853 37 H 0.127 0.873 38 H 0.061 0.939 39 H 0.075 0.925 40 H 0.106 0.894 41 H 0.074 0.926 42 H 0.395 0.605 43 H 0.277 0.723 44 H 0.108 0.892 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.429 -11.921 19.660 27.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.052 3.948 3 H 0.082 0.918 4 N -0.358 5.358 5 C 0.377 3.623 6 O -0.475 6.475 7 C -0.267 4.267 8 C -0.014 4.014 9 N -0.095 5.095 10 H 0.288 0.712 11 C -0.075 4.075 12 C -0.013 4.013 13 N -0.129 5.129 14 C -0.089 4.089 15 C -0.113 4.113 16 C -0.120 4.120 17 N -0.205 5.205 18 C -0.109 4.109 19 C 0.230 3.770 20 O -0.503 6.503 21 N -0.216 5.216 22 C -0.462 4.462 23 H 0.096 0.904 24 C -0.214 4.214 25 N -0.563 5.563 26 Si 0.817 3.183 27 H -0.196 1.196 28 H -0.196 1.196 29 H -0.197 1.197 30 C -0.115 4.115 31 H 0.093 0.907 32 H 0.062 0.938 33 H 0.096 0.904 34 H 0.253 0.747 35 H 0.252 0.748 36 H 0.165 0.835 37 H 0.145 0.855 38 H 0.079 0.921 39 H 0.094 0.906 40 H 0.124 0.876 41 H 0.091 0.909 42 H 0.229 0.771 43 H 0.086 0.914 44 H 0.126 0.874 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -13.642 -12.192 21.027 27.873 hybrid contribution 0.905 0.845 -0.398 1.300 sum -12.737 -11.347 20.629 26.769 Atomic orbital electron populations 1.22086 0.93713 1.03335 1.02211 1.20875 0.94941 0.96033 0.82949 0.91820 1.45699 1.67103 1.14595 1.08444 1.17659 0.76137 0.85521 0.82962 1.90777 1.53074 1.17856 1.85751 1.19489 1.17547 0.95430 0.94223 1.23147 0.94847 0.96211 0.87238 1.41589 1.48632 1.10855 1.08446 0.71204 1.14892 1.18133 0.89433 0.85053 1.24425 0.92093 0.93728 0.91004 1.81364 1.11713 1.07160 1.12641 1.21140 0.97628 0.98713 0.91391 1.23123 0.93446 1.02209 0.92509 1.24014 0.98270 1.00960 0.88731 1.68347 1.04767 1.35441 1.11951 1.22351 0.94853 0.94092 0.99596 1.20839 0.87912 0.85339 0.82927 1.90469 1.70336 1.23156 1.66313 1.41979 1.21568 1.13534 1.44493 1.19660 0.99879 0.99026 1.27668 0.90359 1.26044 1.02750 0.94754 0.97868 1.69674 1.41371 1.04331 1.40905 0.84927 0.77160 0.77848 0.78396 1.19583 1.19629 1.19749 1.24092 0.91958 1.01264 0.94214 0.90683 0.93753 0.90379 0.74691 0.74785 0.83500 0.85549 0.92128 0.90635 0.87554 0.90855 0.77142 0.91373 0.87404 0.90023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.98 9.29 71.98 0.67 -1.31 16 2 C 0.16 2.39 2.42 44.99 0.11 2.50 16 3 H 0.06 1.36 7.37 -2.39 -0.02 1.35 16 4 N -0.71 -8.51 5.07 -445.85 -2.26 -10.77 16 5 C 0.59 10.64 7.78 86.65 0.67 11.31 16 6 O -0.59 -16.82 16.58 -4.05 -0.07 -16.89 16 7 C -0.26 -3.11 6.13 -20.11 -0.12 -3.23 16 8 C 0.13 0.28 11.43 84.27 0.96 1.24 16 9 N -0.50 -1.17 6.02 -186.45 -1.12 -2.30 16 10 H 0.45 -1.88 8.96 -92.71 -0.83 -2.71 16 11 C 0.04 0.38 6.90 39.03 0.27 0.64 16 12 C 0.30 4.51 15.88 88.33 1.40 5.91 16 13 N -0.45 -9.22 18.54 19.00 0.35 -8.87 16 14 C -0.06 -0.85 10.59 22.62 0.24 -0.61 16 15 C -0.09 -1.47 3.49 -10.15 -0.04 -1.51 16 16 C 0.01 0.23 7.51 86.40 0.65 0.88 16 17 N -0.48 -14.38 5.65 -912.34 -5.15 -19.53 16 18 C 0.02 0.78 5.28 85.56 0.45 1.23 16 19 C 0.44 21.35 7.83 87.66 0.69 22.03 16 20 O -0.62 -34.58 16.01 -3.07 -0.05 -34.63 16 21 N -0.58 -30.12 5.29 -306.98 -1.62 -31.74 16 22 C -0.33 -19.12 9.68 84.04 0.81 -18.31 16 23 H 0.08 4.78 7.16 -2.91 -0.02 4.76 16 24 C -0.01 -0.79 5.50 84.93 0.47 -0.33 16 25 N -0.92 -50.27 13.05 21.66 0.28 -49.98 16 26 Si 0.99 43.23 29.55 68.60 2.03 45.26 16 27 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 28 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 29 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 30 C 0.01 0.25 6.57 86.41 0.57 0.82 16 31 H 0.07 0.86 7.43 -2.39 -0.02 0.85 16 32 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.08 0.70 8.14 -2.38 -0.02 0.68 16 34 H 0.42 1.77 7.51 -92.71 -0.70 1.07 16 35 H 0.24 -1.79 7.44 -2.91 -0.02 -1.81 16 36 H 0.15 2.36 8.06 -2.91 -0.02 2.34 16 37 H 0.13 1.48 8.14 -2.39 -0.02 1.47 16 38 H 0.06 1.62 7.29 -2.39 -0.02 1.61 16 39 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 40 H 0.11 3.21 8.08 -2.39 -0.02 3.19 16 41 H 0.07 2.27 7.38 -2.39 -0.02 2.26 16 42 H 0.39 19.59 7.90 -92.70 -0.73 18.85 16 43 H 0.28 14.13 8.31 -92.71 -0.77 13.36 16 44 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 45 H 0.08 1.39 7.85 -2.38 -0.02 1.37 16 Total: -1.00 -86.42 394.78 -0.99 -87.41 By element: Atomic # 1 Polarization: 21.95 SS G_CDS: -1.18 Total: 20.77 kcal Atomic # 6 Polarization: 13.47 SS G_CDS: 7.80 Total: 21.27 kcal Atomic # 7 Polarization: -113.66 SS G_CDS: -9.52 Total: -123.19 kcal Atomic # 8 Polarization: -51.40 SS G_CDS: -0.12 Total: -51.52 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Total: -86.42 -0.99 -87.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276367578.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.122 kcal (2) G-P(sol) polarization free energy of solvation -86.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.410 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.80 seconds