Wall clock time and date at job start Wed Apr 1 2020 04:00:06
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 H 1.08996 * 109.47136 * 2 1
4 4 N 1.46499 * 109.46959 * 239.99824 * 2 1 3
5 5 C 1.36937 * 119.99989 * 84.99802 * 4 2 1
6 6 H 1.07997 * 120.00061 * 0.02562 * 5 4 2
7 7 C 1.38811 * 119.99843 * 179.97438 * 5 4 2
8 8 N 1.31617 * 120.00571 * 0.02562 * 7 5 4
9 9 Si 1.86809 * 119.99937 * 180.02562 * 7 5 4
10 10 H 1.48491 * 109.46868 * 90.00389 * 9 7 5
11 11 H 1.48497 * 109.47150 * 210.00438 * 9 7 5
12 12 H 1.48501 * 109.46971 * 330.00370 * 9 7 5
13 13 C 1.52998 * 109.46801 * 120.00090 * 2 1 3
14 14 H 1.09008 * 109.50720 * 174.90106 * 13 2 1
15 15 C 1.53299 * 109.51184 * 294.99374 * 13 2 1
16 16 N 1.47151 * 108.38222 * 172.22953 * 15 13 2
17 17 C 1.34774 * 120.98123 * 129.44860 * 16 15 13
18 18 O 1.21591 * 120.00090 * 353.38437 * 17 16 15
19 19 C 1.47606 * 120.00357 * 173.38301 * 17 16 15
20 20 C 1.41818 * 119.97744 * 329.13098 * 19 17 16
21 21 C 1.35642 * 119.59658 * 179.71887 * 20 19 17
22 22 C 1.41048 * 119.39988 * 0.54521 * 21 20 19
23 23 N 1.32184 * 133.25314 * 179.69823 * 22 21 20
24 24 N 1.28648 * 109.56559 * 180.02562 * 23 22 21
25 25 C 1.30723 * 110.34517 * 0.02562 * 24 23 22
26 26 N 1.36254 * 107.44679 * 359.97438 * 25 24 23
27 27 C 1.35846 * 133.52667 * 179.97438 * 26 25 24
28 28 C 1.47147 * 118.03710 * 309.46873 * 16 15 13
29 29 C 1.53297 * 108.38725 * 50.53467 * 28 16 15
30 30 O 1.42955 * 109.51882 * 54.74686 * 13 2 1
31 31 H 1.09001 * 109.47204 * 300.00043 * 1 2 3
32 32 H 1.09000 * 109.47319 * 60.00093 * 1 2 3
33 33 H 1.08996 * 109.47136 * 179.97438 * 1 2 3
34 34 H 0.97000 * 119.99877 * 265.00137 * 4 2 1
35 35 H 0.96991 * 120.00634 * 179.97438 * 8 7 5
36 36 H 1.08995 * 109.68599 * 291.95407 * 15 13 2
37 37 H 1.09003 * 109.67979 * 52.50778 * 15 13 2
38 38 H 1.08001 * 120.19787 * 359.97438 * 20 19 17
39 39 H 1.07999 * 120.29641 * 180.26747 * 21 20 19
40 40 H 1.08000 * 126.27593 * 180.02562 * 25 24 23
41 41 H 1.08006 * 119.80971 * 0.02562 * 27 26 25
42 42 H 1.08999 * 109.68299 * 290.81134 * 28 16 15
43 43 H 1.09001 * 109.71566 * 170.27919 * 28 16 15
44 44 H 1.09000 * 109.51461 * 187.77252 * 29 28 16
45 45 H 1.08999 * 109.50620 * 67.62421 * 29 28 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0276 0.0000
4 7 2.0183 -0.6906 -1.1962
5 6 2.1490 -0.0076 -2.3758
6 1 1.8926 1.0404 -2.4242
7 6 2.6122 -0.6619 -3.5090
8 7 2.9253 -1.9389 -3.4499
9 14 2.7912 0.2701 -5.1181
10 1 4.1534 0.8551 -5.2022
11 1 2.5812 -0.6611 -6.2555
12 1 1.7812 1.3573 -5.1754
13 6 2.0399 -0.7213 1.2492
14 1 3.1262 -0.8014 1.2054
15 6 1.6350 0.0698 2.4984
16 7 1.9698 -0.7334 3.6850
17 6 2.6771 -0.2050 4.7033
18 8 3.1513 0.9098 4.6001
19 6 2.8762 -0.9797 5.9439
20 6 1.8864 -1.9016 6.3702
21 6 2.0799 -2.6136 7.5084
22 6 3.2593 -2.4164 8.2564
23 7 3.7184 -2.9420 9.3790
24 7 4.8634 -2.4267 9.6593
25 6 5.2035 -1.5525 8.7488
26 7 4.2017 -1.5127 7.8262
27 6 4.0098 -0.8037 6.6835
28 6 1.5099 -2.1305 3.7269
29 6 1.9209 -2.8143 2.4179
30 8 1.4659 -2.0289 1.3135
31 1 -0.3634 0.5138 0.8900
32 1 -0.3634 0.5138 -0.8900
33 1 -0.3633 -1.0276 -0.0005
34 1 2.2490 -1.6318 -1.1526
35 1 3.2485 -2.3962 -4.2419
36 1 2.1798 1.0133 2.5280
37 1 0.5627 0.2649 2.4777
38 1 0.9860 -2.0389 5.7898
39 1 1.3356 -3.3218 7.8411
40 1 6.1124 -0.9694 8.7308
41 1 4.7589 -0.0969 6.3580
42 1 0.4251 -2.1570 3.8299
43 1 1.9712 -2.6444 4.5702
44 1 1.4720 -3.8064 2.3688
45 1 3.0066 -2.9029 2.3789
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001276800835.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:00:06
Heat of formation + Delta-G solvation = 73.478059 kcal
Electronic energy + Delta-G solvation = -30060.529225 eV
Core-core repulsion = 25888.639828 eV
Total energy + Delta-G solvation = -4171.889397 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 345.159 amu
Computer time = 0.17 seconds
Orbital eigenvalues (eV)
-44.07948 -40.97168 -39.01344 -38.00499 -35.82255 -34.96795 -34.39519 -32.67676
-31.94526 -30.42168 -29.98408 -28.63705 -27.56344 -25.60319 -24.59635 -24.36549
-23.47306 -23.01068 -22.49185 -20.25044 -19.73735 -19.06195 -18.03673 -17.36661
-17.13428 -16.98605 -16.72594 -16.16041 -15.73462 -15.54141 -15.49606 -15.33755
-14.69166 -14.61070 -14.35421 -13.81190 -13.60872 -13.38197 -13.03324 -12.98941
-12.74914 -12.50015 -12.39634 -12.16328 -12.11339 -11.66814 -11.43144 -11.22848
-11.10432 -10.91182 -10.77873 -10.69789 -10.49816 -10.28989 -10.12046 -9.99398
-9.93663 -9.70838 -8.94259 -8.77706 -8.67351 -6.98439 -5.77825 -3.06936
-0.12703 0.32221 1.60876 1.95733 2.39305 2.49418 2.85426 3.41970
3.47258 3.47574 3.48934 3.72815 3.83268 3.92860 4.01180 4.15702
4.32463 4.49479 4.55848 4.63071 4.70835 4.91294 5.00091 5.03482
5.14930 5.20703 5.28066 5.34512 5.41051 5.52189 5.54909 5.57684
5.64170 5.67550 5.84050 5.90763 6.03491 6.18707 6.21503 6.38454
6.57286 6.75225 6.91418 7.09825 7.35328 7.63387 7.67796 7.98641
8.40206 9.52270 10.09017 10.45318 11.44501
Molecular weight = 345.16amu
Principal moments of inertia in cm(-1)
A = 0.024265 B = 0.002162 C = 0.002144
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1153.657656 B =12947.933964 C =13055.653391
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.163 4.163
2 C 0.185 3.815
3 H 0.060 0.940
4 N -0.719 5.719
5 C -0.240 4.240
6 H 0.071 0.929
7 C -0.013 4.013
8 N -0.930 5.930
9 Si 0.906 3.094
10 H -0.290 1.290
11 H -0.292 1.292
12 H -0.282 1.282
13 C 0.076 3.924
14 H 0.065 0.935
15 C 0.082 3.918
16 N -0.601 5.601
17 C 0.571 3.429
18 O -0.529 6.529
19 C -0.148 4.148
20 C -0.077 4.077
21 C -0.079 4.079
22 C 0.200 3.800
23 N -0.287 5.287
24 N -0.251 5.251
25 C 0.129 3.871
26 N -0.398 5.398
27 C 0.139 3.861
28 C 0.056 3.944
29 C 0.045 3.955
30 O -0.356 6.356
31 H 0.034 0.966
32 H 0.053 0.947
33 H 0.057 0.943
34 H 0.389 0.611
35 H 0.255 0.745
36 H 0.103 0.897
37 H 0.086 0.914
38 H 0.162 0.838
39 H 0.166 0.834
40 H 0.232 0.768
41 H 0.185 0.815
42 H 0.086 0.914
43 H 0.101 0.899
44 H 0.107 0.893
45 H 0.054 0.946
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.750 -0.585 22.989 23.063
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.223 4.223
2 C 0.074 3.926
3 H 0.078 0.922
4 N -0.360 5.360
5 C -0.371 4.371
6 H 0.089 0.911
7 C -0.209 4.209
8 N -0.579 5.579
9 Si 0.737 3.263
10 H -0.218 1.218
11 H -0.218 1.218
12 H -0.207 1.207
13 C 0.016 3.984
14 H 0.083 0.917
15 C -0.040 4.040
16 N -0.334 5.334
17 C 0.358 3.642
18 O -0.406 6.406
19 C -0.155 4.155
20 C -0.101 4.101
21 C -0.100 4.100
22 C -0.049 4.049
23 N -0.132 5.132
24 N -0.088 5.088
25 C -0.153 4.153
26 N -0.078 5.078
27 C 0.014 3.986
28 C -0.067 4.067
29 C -0.033 4.033
30 O -0.274 6.274
31 H 0.053 0.947
32 H 0.072 0.928
33 H 0.076 0.924
34 H 0.223 0.777
35 H 0.065 0.935
36 H 0.122 0.878
37 H 0.105 0.895
38 H 0.180 0.820
39 H 0.183 0.817
40 H 0.248 0.752
41 H 0.202 0.798
42 H 0.104 0.896
43 H 0.119 0.881
44 H 0.125 0.875
45 H 0.072 0.928
Dipole moment (debyes) X Y Z Total
from point charges -1.404 -0.841 24.063 24.119
hybrid contribution 0.385 0.976 -1.839 2.117
sum -1.019 0.135 22.224 22.248
Atomic orbital electron populations
1.22425 0.98615 1.01663 0.99595 1.20195 0.92863 0.94618 0.84911
0.92238 1.42347 1.77874 1.10949 1.04873 1.19236 1.36705 0.93860
0.87333 0.91144 1.24743 1.02124 0.95956 0.98049 1.69668 1.50685
1.08632 1.28873 0.86207 0.77774 0.78603 0.83697 1.21760 1.21799
1.20750 1.23000 0.97741 0.83019 0.94623 0.91712 1.22620 1.02284
0.95820 0.83236 1.47986 1.53858 1.12937 1.18587 1.17659 0.78583
0.85723 0.82259 1.90847 1.48835 1.19598 1.81294 1.19480 0.95989
1.01980 0.98062 1.21583 0.99506 0.93371 0.95635 1.20223 0.94277
1.02017 0.93532 1.22608 0.93661 0.92923 0.95729 1.74963 1.05044
1.22596 1.10577 1.74213 1.06691 1.06836 1.21062 1.26723 0.96302
1.04389 0.87907 1.43890 1.17103 1.28696 1.18160 1.21685 0.98942
0.94230 0.83786 1.23110 1.00980 0.81744 1.00835 1.22933 0.99706
0.95332 0.85311 1.88124 1.67391 1.25833 1.46030 0.94686 0.92828
0.92392 0.77679 0.93532 0.87832 0.89549 0.82041 0.81702 0.75226
0.79800 0.89633 0.88112 0.87543 0.92757
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -2.79 9.06 37.16 0.34 -2.45 16
2 C 0.18 3.46 2.77 -67.93 -0.19 3.27 16
3 H 0.06 1.11 8.08 -51.93 -0.42 0.69 16
4 N -0.72 -17.52 5.10 -53.43 -0.27 -17.79 16
5 C -0.24 -6.51 9.93 -15.06 -0.15 -6.66 16
6 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16
7 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16
8 N -0.93 -27.78 13.06 55.49 0.72 -27.05 16
9 Si 0.91 22.07 29.55 -169.99 -5.02 17.05 16
10 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16
11 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16
12 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16
13 C 0.08 1.16 2.60 -26.58 -0.07 1.09 16
14 H 0.06 1.10 8.14 -51.92 -0.42 0.68 16
15 C 0.08 1.02 5.84 -3.53 -0.02 1.00 16
16 N -0.60 -6.19 3.02 -173.48 -0.52 -6.72 16
17 C 0.57 6.10 7.43 -12.44 -0.09 6.01 16
18 O -0.53 -7.36 16.13 5.29 0.09 -7.28 16
19 C -0.15 -1.18 5.36 -105.34 -0.56 -1.74 16
20 C -0.08 -0.45 7.40 -39.14 -0.29 -0.74 16
21 C -0.08 -0.51 10.09 -39.45 -0.40 -0.91 16
22 C 0.20 1.90 7.92 -155.95 -1.23 0.67 16
23 N -0.29 -3.45 12.29 31.19 0.38 -3.06 16
24 N -0.25 -2.84 12.18 29.87 0.36 -2.48 16
25 C 0.13 1.01 12.97 -89.07 -1.16 -0.15 16
26 N -0.40 -3.29 2.94 -63.63 -0.19 -3.48 16
27 C 0.14 1.03 10.52 -16.40 -0.17 0.85 16
28 C 0.06 0.43 4.86 -3.54 -0.02 0.41 16
29 C 0.05 0.47 6.99 37.31 0.26 0.73 16
30 O -0.36 -5.37 9.24 -35.23 -0.33 -5.70 16
31 H 0.03 0.48 6.42 -51.93 -0.33 0.15 16
32 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16
33 H 0.06 1.05 7.56 -51.93 -0.39 0.65 16
34 H 0.39 10.27 7.59 -40.82 -0.31 9.96 16
35 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16
36 H 0.10 1.36 7.06 -51.93 -0.37 1.00 16
37 H 0.09 1.00 6.27 -51.93 -0.33 0.67 16
38 H 0.16 0.61 5.59 -52.49 -0.29 0.32 16
39 H 0.17 0.65 8.06 -52.49 -0.42 0.23 16
40 H 0.23 0.71 8.06 -52.49 -0.42 0.29 16
41 H 0.18 1.06 7.86 -52.48 -0.41 0.64 16
42 H 0.09 0.53 7.89 -51.93 -0.41 0.12 16
43 H 0.10 0.55 4.54 -51.93 -0.24 0.32 16
44 H 0.11 0.89 8.14 -51.93 -0.42 0.46 16
45 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16
LS Contribution 367.75 15.07 5.54 5.54
Total: -1.00 -35.67 367.75 -8.67 -44.33
By element:
Atomic # 1 Polarization: 11.26 SS G_CDS: -5.58 Total: 5.68 kcal
Atomic # 6 Polarization: 4.79 SS G_CDS: -3.85 Total: 0.94 kcal
Atomic # 7 Polarization: -61.06 SS G_CDS: 0.49 Total: -60.57 kcal
Atomic # 8 Polarization: -12.74 SS G_CDS: -0.24 Total: -12.98 kcal
Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal
Total LS contribution 5.54 Total: 5.54 kcal
Total: -35.67 -8.67 -44.33 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001276800835.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 117.811 kcal
(2) G-P(sol) polarization free energy of solvation -35.667 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.143 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.665 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.333 kcal
(6) G-S(sol) free energy of system = (1) + (5) 73.478 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.17 seconds