Wall clock time and date at job start Wed Apr 1 2020 03:54:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.46930 * 2 1 4 4 N 1.46494 * 109.46720 * 119.99969 * 2 1 3 5 5 C 1.36935 * 120.00199 * 274.99485 * 4 2 1 6 6 H 1.08006 * 119.99698 * 0.02562 * 5 4 2 7 7 C 1.38810 * 120.00541 * 180.02562 * 5 4 2 8 8 N 1.31616 * 120.00254 * 180.02562 * 7 5 4 9 9 Si 1.86803 * 119.99777 * 359.97438 * 7 5 4 10 10 H 1.48507 * 109.46659 * 90.00392 * 9 7 5 11 11 H 1.48493 * 109.47231 * 210.00126 * 9 7 5 12 12 H 1.48498 * 109.47136 * 330.00456 * 9 7 5 13 13 C 1.52999 * 109.47047 * 239.99975 * 2 1 3 14 14 H 1.09008 * 110.91331 * 302.44918 * 13 2 1 15 15 C 1.55154 * 111.00682 * 66.34999 * 13 2 1 16 16 C 1.54325 * 102.94303 * 153.57509 * 15 13 2 17 17 N 1.47290 * 107.30599 * 337.81911 * 16 15 13 18 18 C 1.34774 * 125.79121 * 178.92556 * 17 16 15 19 19 O 1.21563 * 119.99992 * 180.02562 * 18 17 16 20 20 C 1.47854 * 120.00331 * 359.97438 * 18 17 16 21 21 C 1.39716 * 119.43972 * 180.02562 * 20 18 17 22 22 C 1.36996 * 119.59227 * 179.97438 * 21 20 18 23 23 C 1.39887 * 118.37324 * 0.02562 * 22 21 20 24 24 N 1.35422 * 133.69159 * 179.97438 * 23 22 21 25 25 C 1.30935 * 109.57041 * 180.02562 * 24 23 22 26 26 O 1.35182 * 124.99855 * 179.97438 * 25 24 23 27 27 N 1.36385 * 110.00565 * 0.02562 * 25 24 23 28 28 H 0.96999 * 126.31986 * 180.02562 * 27 25 24 29 29 C 1.38256 * 107.35949 * 359.97438 * 27 25 24 30 30 N 1.31770 * 133.70667 * 180.27277 * 29 27 25 31 31 C 1.47425 * 108.55742 * 358.92448 * 17 16 15 32 32 H 1.08998 * 109.47284 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.46746 * 300.00508 * 1 2 3 34 34 H 1.09007 * 109.47126 * 60.00016 * 1 2 3 35 35 H 0.96996 * 120.00464 * 95.00256 * 4 2 1 36 36 H 0.97006 * 120.00223 * 179.97438 * 8 7 5 37 37 H 1.09002 * 110.72290 * 271.94195 * 15 13 2 38 38 H 1.08997 * 110.72022 * 35.20967 * 15 13 2 39 39 H 1.09004 * 109.88239 * 97.22707 * 16 15 13 40 40 H 1.08995 * 109.88239 * 218.23629 * 16 15 13 41 41 H 1.08001 * 120.20588 * 359.95359 * 21 20 18 42 42 H 1.08007 * 120.81417 * 180.02562 * 22 21 20 43 43 H 0.96702 * 114.00215 * 90.02387 * 26 25 24 44 44 H 1.09002 * 110.36696 * 265.26054 * 31 17 16 45 45 H 1.08995 * 110.36608 * 143.04891 * 31 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1491 -0.0075 2.3757 6 1 1.8920 1.0404 2.4243 7 6 2.6122 -0.6616 3.5090 8 7 2.7375 -0.0051 4.6429 9 14 3.0563 -2.4742 3.4253 10 1 4.4889 -2.6164 3.0609 11 1 2.8172 -3.1041 4.7485 12 1 2.2160 -3.1428 2.3996 13 6 2.0400 -0.7213 -1.2492 14 1 1.6546 -1.7399 -1.2950 15 6 1.6776 0.0687 -2.5345 16 6 2.7767 -0.3640 -3.5277 17 7 3.9189 -0.8479 -2.7336 18 6 5.0736 -1.3350 -3.2295 19 8 5.9504 -1.7071 -2.4741 20 6 5.2736 -1.4178 -4.6921 21 6 6.4750 -1.9251 -5.1933 22 6 6.6634 -2.0038 -6.5479 23 6 5.6340 -1.5675 -7.3887 24 7 5.4880 -1.5042 -8.7335 25 6 4.3125 -1.0062 -9.0241 26 8 3.8433 -0.8056 -10.2759 27 7 3.6314 -0.7185 -7.8780 28 1 2.7397 -0.3413 -7.8190 29 6 4.4460 -1.0648 -6.8160 30 7 4.3069 -1.0120 -5.5068 31 6 3.5881 -0.7103 -1.3036 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3633 0.5139 0.8899 34 1 -0.3634 0.5139 -0.8900 35 1 2.2490 -1.6317 1.1527 36 1 3.0608 -0.4624 5.4350 37 1 0.6921 -0.2202 -2.8998 38 1 1.7231 1.1425 -2.3528 39 1 2.4043 -1.1647 -4.1668 40 1 3.0804 0.4863 -4.1381 41 1 7.2506 -2.2530 -4.5170 42 1 7.5842 -2.3931 -6.9568 43 1 3.3621 -1.5606 -10.6413 44 1 3.9748 0.2312 -0.9136 45 1 3.9935 -1.5493 -0.7381 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001279018465.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:54:43 Heat of formation + Delta-G solvation = 46.590820 kcal Electronic energy + Delta-G solvation = -29697.317847 eV Core-core repulsion = 25524.262531 eV Total energy + Delta-G solvation = -4173.055315 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.91491 -40.41857 -39.09099 -37.97544 -37.19126 -35.39024 -34.31707 -32.54131 -31.81488 -30.86527 -30.01208 -28.90033 -28.30393 -25.21832 -24.04017 -23.61935 -23.00273 -22.28929 -21.34147 -20.24034 -19.87242 -19.75919 -18.38560 -17.97518 -17.76939 -17.27951 -16.63843 -16.15737 -15.49457 -15.46159 -15.25209 -14.78088 -14.30655 -14.12278 -13.80643 -13.76854 -13.55434 -13.07080 -12.94626 -12.73382 -12.57988 -12.49053 -12.35504 -12.14892 -11.83832 -11.80337 -11.70436 -11.39195 -10.98625 -10.82393 -10.62033 -10.58185 -10.36777 -10.18605 -9.93211 -9.60579 -9.55501 -9.47213 -8.96670 -8.91729 -8.55155 -7.26045 -5.74614 -3.10372 -0.09038 0.73609 1.47788 1.85147 2.63993 2.81277 3.00370 3.41378 3.44871 3.49893 3.50680 3.66796 3.99046 4.30881 4.37395 4.57391 4.62260 4.69496 4.78466 4.97250 5.10309 5.19455 5.34147 5.47254 5.50882 5.52975 5.58924 5.62679 5.76919 5.83803 5.86313 5.92188 6.01413 6.06268 6.07696 6.18431 6.26301 6.30898 6.40226 6.49798 6.77375 6.80083 6.98587 6.99180 7.17789 7.48089 8.00670 8.04985 8.44190 9.22457 9.95266 10.14331 11.43646 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.020005 B = 0.002407 C = 0.002202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.282503 B =11628.502165 C =12712.130892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.190 3.810 3 H 0.058 0.942 4 N -0.749 5.749 5 C -0.241 4.241 6 H 0.090 0.910 7 C 0.006 3.994 8 N -0.934 5.934 9 Si 0.881 3.119 10 H -0.282 1.282 11 H -0.292 1.292 12 H -0.278 1.278 13 C -0.106 4.106 14 H 0.080 0.920 15 C -0.129 4.129 16 C 0.120 3.880 17 N -0.597 5.597 18 C 0.580 3.420 19 O -0.527 6.527 20 C 0.130 3.870 21 C -0.118 4.118 22 C -0.026 4.026 23 C 0.034 3.966 24 N -0.479 5.479 25 C 0.475 3.525 26 O -0.437 6.437 27 N -0.586 5.586 28 H 0.430 0.570 29 C 0.245 3.755 30 N -0.444 5.444 31 C 0.116 3.884 32 H 0.044 0.956 33 H 0.058 0.942 34 H 0.040 0.960 35 H 0.361 0.639 36 H 0.259 0.741 37 H 0.080 0.920 38 H 0.078 0.922 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.162 0.838 42 H 0.153 0.847 43 H 0.416 0.584 44 H 0.080 0.920 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.179 -3.019 -31.477 31.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.080 3.920 3 H 0.076 0.924 4 N -0.392 5.392 5 C -0.371 4.371 6 H 0.108 0.892 7 C -0.190 4.190 8 N -0.582 5.582 9 Si 0.711 3.289 10 H -0.209 1.209 11 H -0.219 1.219 12 H -0.204 1.204 13 C -0.126 4.126 14 H 0.098 0.902 15 C -0.167 4.167 16 C -0.003 4.003 17 N -0.329 5.329 18 C 0.367 3.633 19 O -0.402 6.402 20 C -0.018 4.018 21 C -0.141 4.141 22 C -0.053 4.053 23 C -0.088 4.088 24 N -0.211 5.211 25 C 0.170 3.830 26 O -0.239 6.239 27 N -0.214 5.214 28 H 0.271 0.729 29 C 0.007 3.993 30 N -0.160 5.160 31 C -0.006 4.006 32 H 0.063 0.937 33 H 0.077 0.923 34 H 0.059 0.941 35 H 0.193 0.807 36 H 0.069 0.931 37 H 0.099 0.901 38 H 0.097 0.903 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.179 0.821 42 H 0.171 0.829 43 H 0.275 0.725 44 H 0.098 0.902 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 0.441 -2.447 -31.238 31.337 hybrid contribution -0.505 -1.519 -0.023 1.601 sum -0.064 -3.966 -31.261 31.512 Atomic orbital electron populations 1.22404 0.98605 1.00873 1.00502 1.20132 0.92071 0.95467 0.84311 0.92354 1.42796 1.79834 1.09384 1.07158 1.19029 1.36954 0.95471 0.85672 0.89211 1.24653 1.01384 0.97407 0.95579 1.69697 1.52626 1.35580 1.00268 0.86602 0.78700 0.86830 0.76723 1.20873 1.21852 1.20374 1.22717 0.93949 1.00372 0.95570 0.90170 1.22779 0.98080 1.01044 0.94839 1.22126 0.85478 0.99330 0.93383 1.48454 1.15022 1.60391 1.08988 1.17274 0.81698 0.78666 0.85694 1.90858 1.41943 1.49280 1.58166 1.20958 0.90219 0.97623 0.93009 1.21623 0.98133 0.99024 0.95365 1.20475 0.97541 0.96164 0.91161 1.19666 0.95594 1.03492 0.90002 1.70657 1.15474 1.21564 1.13404 1.20225 0.86980 0.95161 0.80666 1.84835 1.74340 1.43622 1.21077 1.43029 1.18233 1.55667 1.04423 0.72880 1.18524 0.91195 1.01789 0.87796 1.66559 1.31603 1.16975 1.00883 1.22368 0.95283 1.03376 0.79553 0.93657 0.92283 0.94094 0.80675 0.93094 0.90127 0.90286 0.91092 0.91114 0.82086 0.82942 0.72470 0.90216 0.90023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.64 9.34 37.16 0.35 -2.29 16 2 C 0.19 3.36 2.40 -67.93 -0.16 3.19 16 3 H 0.06 1.08 8.05 -51.93 -0.42 0.66 16 4 N -0.75 -16.98 4.62 -53.43 -0.25 -17.23 16 5 C -0.24 -6.64 10.41 -15.06 -0.16 -6.80 16 6 H 0.09 2.64 8.06 -52.48 -0.42 2.22 16 7 C 0.01 0.16 5.50 -17.43 -0.10 0.07 16 8 N -0.93 -29.30 13.97 55.49 0.78 -28.52 16 9 Si 0.88 22.31 27.74 -169.99 -4.71 17.59 16 10 H -0.28 -7.20 7.11 56.52 0.40 -6.80 16 11 H -0.29 -7.52 7.11 56.52 0.40 -7.11 16 12 H -0.28 -6.60 6.52 56.52 0.37 -6.23 16 13 C -0.11 -1.53 2.62 -88.47 -0.23 -1.76 16 14 H 0.08 1.16 8.14 -51.92 -0.42 0.74 16 15 C -0.13 -1.40 5.59 -24.90 -0.14 -1.54 16 16 C 0.12 1.33 5.40 -2.92 -0.02 1.31 16 17 N -0.60 -8.49 3.34 -171.41 -0.57 -9.06 16 18 C 0.58 8.72 7.83 -12.33 -0.10 8.62 16 19 O -0.53 -9.50 16.54 5.31 0.09 -9.41 16 20 C 0.13 1.58 6.72 -82.97 -0.56 1.02 16 21 C -0.12 -1.20 9.55 -39.48 -0.38 -1.58 16 22 C -0.03 -0.23 10.16 -39.42 -0.40 -0.63 16 23 C 0.03 0.35 7.24 -84.57 -0.61 -0.26 16 24 N -0.48 -4.74 11.30 -12.11 -0.14 -4.87 16 25 C 0.47 3.38 9.39 -88.77 -0.83 2.54 16 26 O -0.44 -1.75 13.62 -17.24 -0.23 -1.99 16 27 N -0.59 -3.86 6.25 -13.33 -0.08 -3.95 16 28 H 0.43 1.57 8.96 -40.82 -0.37 1.20 16 29 C 0.24 2.39 8.46 -155.51 -1.32 1.08 16 30 N -0.44 -4.87 6.85 -8.77 -0.06 -4.93 16 31 C 0.12 1.86 6.08 -2.53 -0.02 1.84 16 32 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 34 H 0.04 0.53 7.50 -51.92 -0.39 0.14 16 35 H 0.36 8.20 5.66 -40.82 -0.23 7.97 16 36 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 37 H 0.08 0.73 8.13 -51.93 -0.42 0.31 16 38 H 0.08 0.84 8.01 -51.93 -0.42 0.42 16 39 H 0.07 0.74 7.40 -51.93 -0.38 0.36 16 40 H 0.07 0.75 7.54 -51.93 -0.39 0.36 16 41 H 0.16 1.49 7.61 -52.49 -0.40 1.10 16 42 H 0.15 0.96 8.06 -52.48 -0.42 0.54 16 43 H 0.42 -0.65 9.06 45.56 0.41 -0.23 16 44 H 0.08 1.37 8.04 -51.93 -0.42 0.95 16 45 H 0.08 1.48 8.03 -51.93 -0.42 1.06 16 LS Contribution 374.49 15.07 5.64 5.64 Total: -1.00 -36.55 374.49 -9.33 -45.88 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: -5.12 Total: 6.04 kcal Atomic # 6 Polarization: 9.48 SS G_CDS: -4.66 Total: 4.81 kcal Atomic # 7 Polarization: -68.24 SS G_CDS: -0.32 Total: -68.56 kcal Atomic # 8 Polarization: -11.26 SS G_CDS: -0.15 Total: -11.40 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -4.71 Total: 17.59 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -36.55 -9.33 -45.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279018465.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.467 kcal (2) G-P(sol) polarization free energy of solvation -36.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.876 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds