Wall clock time and date at job start Wed Apr 1 2020 03:54:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.46930 * 2 1 4 4 N 1.46494 * 109.46720 * 119.99969 * 2 1 3 5 5 C 1.36935 * 120.00199 * 274.99485 * 4 2 1 6 6 H 1.08006 * 119.99698 * 0.02562 * 5 4 2 7 7 C 1.38810 * 120.00541 * 180.02562 * 5 4 2 8 8 N 1.31616 * 120.00254 * 180.02562 * 7 5 4 9 9 Si 1.86803 * 119.99777 * 359.97438 * 7 5 4 10 10 H 1.48507 * 109.46659 * 90.00392 * 9 7 5 11 11 H 1.48493 * 109.47231 * 210.00126 * 9 7 5 12 12 H 1.48498 * 109.47136 * 330.00456 * 9 7 5 13 13 C 1.52999 * 109.47047 * 239.99975 * 2 1 3 14 14 H 1.09008 * 110.91331 * 302.44918 * 13 2 1 15 15 C 1.55154 * 111.00682 * 66.34999 * 13 2 1 16 16 C 1.54325 * 102.94303 * 153.57509 * 15 13 2 17 17 N 1.47290 * 107.30599 * 337.81911 * 16 15 13 18 18 C 1.34774 * 125.79121 * 178.92556 * 17 16 15 19 19 O 1.21563 * 119.99992 * 180.02562 * 18 17 16 20 20 C 1.47854 * 120.00331 * 359.97438 * 18 17 16 21 21 C 1.39716 * 119.43972 * 180.02562 * 20 18 17 22 22 C 1.36996 * 119.59227 * 179.97438 * 21 20 18 23 23 C 1.39887 * 118.37324 * 0.02562 * 22 21 20 24 24 N 1.35422 * 133.69159 * 179.97438 * 23 22 21 25 25 C 1.30935 * 109.57041 * 180.02562 * 24 23 22 26 26 O 1.35182 * 124.99855 * 179.97438 * 25 24 23 27 27 N 1.36385 * 110.00565 * 0.02562 * 25 24 23 28 28 H 0.96999 * 126.31986 * 180.02562 * 27 25 24 29 29 C 1.38256 * 107.35949 * 359.97438 * 27 25 24 30 30 N 1.31770 * 133.70667 * 180.27277 * 29 27 25 31 31 C 1.47425 * 108.55742 * 358.92448 * 17 16 15 32 32 H 1.08998 * 109.47284 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.46746 * 300.00508 * 1 2 3 34 34 H 1.09007 * 109.47126 * 60.00016 * 1 2 3 35 35 H 0.96996 * 120.00464 * 95.00256 * 4 2 1 36 36 H 0.97006 * 120.00223 * 179.97438 * 8 7 5 37 37 H 1.09002 * 110.72290 * 271.94195 * 15 13 2 38 38 H 1.08997 * 110.72022 * 35.20967 * 15 13 2 39 39 H 1.09004 * 109.88239 * 97.22707 * 16 15 13 40 40 H 1.08995 * 109.88239 * 218.23629 * 16 15 13 41 41 H 1.08001 * 120.20588 * 359.95359 * 21 20 18 42 42 H 1.08007 * 120.81417 * 180.02562 * 22 21 20 43 43 H 0.96702 * 114.00215 * 90.02387 * 26 25 24 44 44 H 1.09002 * 110.36696 * 265.26054 * 31 17 16 45 45 H 1.08995 * 110.36608 * 143.04891 * 31 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1491 -0.0075 2.3757 6 1 1.8920 1.0404 2.4243 7 6 2.6122 -0.6616 3.5090 8 7 2.7375 -0.0051 4.6429 9 14 3.0563 -2.4742 3.4253 10 1 4.4889 -2.6164 3.0609 11 1 2.8172 -3.1041 4.7485 12 1 2.2160 -3.1428 2.3996 13 6 2.0400 -0.7213 -1.2492 14 1 1.6546 -1.7399 -1.2950 15 6 1.6776 0.0687 -2.5345 16 6 2.7767 -0.3640 -3.5277 17 7 3.9189 -0.8479 -2.7336 18 6 5.0736 -1.3350 -3.2295 19 8 5.9504 -1.7071 -2.4741 20 6 5.2736 -1.4178 -4.6921 21 6 6.4750 -1.9251 -5.1933 22 6 6.6634 -2.0038 -6.5479 23 6 5.6340 -1.5675 -7.3887 24 7 5.4880 -1.5042 -8.7335 25 6 4.3125 -1.0062 -9.0241 26 8 3.8433 -0.8056 -10.2759 27 7 3.6314 -0.7185 -7.8780 28 1 2.7397 -0.3413 -7.8190 29 6 4.4460 -1.0648 -6.8160 30 7 4.3069 -1.0120 -5.5068 31 6 3.5881 -0.7103 -1.3036 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3633 0.5139 0.8899 34 1 -0.3634 0.5139 -0.8900 35 1 2.2490 -1.6317 1.1527 36 1 3.0608 -0.4624 5.4350 37 1 0.6921 -0.2202 -2.8998 38 1 1.7231 1.1425 -2.3528 39 1 2.4043 -1.1647 -4.1668 40 1 3.0804 0.4863 -4.1381 41 1 7.2506 -2.2530 -4.5170 42 1 7.5842 -2.3931 -6.9568 43 1 3.3621 -1.5606 -10.6413 44 1 3.9748 0.2312 -0.9136 45 1 3.9935 -1.5493 -0.7381 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001279018465.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:54:42 Heat of formation + Delta-G solvation = 16.504144 kcal Electronic energy + Delta-G solvation = -29698.622503 eV Core-core repulsion = 25524.262531 eV Total energy + Delta-G solvation = -4174.359972 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -43.56282 -41.43376 -39.88730 -39.01360 -37.85130 -36.93623 -35.02273 -34.29875 -32.70686 -32.25547 -30.94154 -30.31215 -29.46485 -26.14262 -25.57937 -24.65684 -23.91694 -22.93690 -22.68614 -21.32551 -21.11526 -20.38251 -19.62920 -19.05779 -18.54385 -18.43209 -17.38308 -17.28970 -16.65830 -16.49785 -16.25159 -16.04960 -15.61827 -15.38124 -14.97716 -14.59891 -14.47564 -14.45382 -14.22978 -13.97320 -13.84123 -13.57516 -13.36010 -13.24363 -13.17484 -12.95106 -12.72151 -12.47079 -12.39977 -12.20644 -12.10197 -11.88875 -11.71648 -11.67578 -11.45568 -11.32769 -10.97308 -10.41441 -10.16075 -9.80972 -9.55718 -9.28405 -7.99950 -5.31329 -0.82935 0.01426 0.90906 1.16243 1.36795 1.41225 1.46072 1.72408 1.79401 2.39270 2.49377 2.66000 2.98879 3.22010 3.32571 3.42526 3.64707 3.70212 3.75022 3.82442 3.88691 4.01966 4.36818 4.42648 4.46802 4.50038 4.53863 4.62548 4.75688 4.82106 4.86750 4.89344 4.96148 5.01131 5.08488 5.09397 5.22819 5.29430 5.34751 5.41546 5.63492 5.66537 5.81692 6.24666 6.26351 6.38556 6.41926 6.60353 6.93816 7.11484 7.89126 8.05673 9.21798 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.020005 B = 0.002407 C = 0.002202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.282503 B =11628.502165 C =12712.130892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.183 3.817 3 H 0.047 0.953 4 N -0.753 5.753 5 C -0.216 4.216 6 H 0.060 0.940 7 C -0.065 4.065 8 N -0.985 5.985 9 Si 0.945 3.055 10 H -0.287 1.287 11 H -0.297 1.297 12 H -0.251 1.251 13 C -0.095 4.095 14 H 0.088 0.912 15 C -0.116 4.116 16 C 0.123 3.877 17 N -0.598 5.598 18 C 0.576 3.424 19 O -0.570 6.570 20 C 0.107 3.893 21 C -0.117 4.117 22 C -0.022 4.022 23 C 0.028 3.972 24 N -0.513 5.513 25 C 0.499 3.501 26 O -0.434 6.434 27 N -0.571 5.571 28 H 0.445 0.555 29 C 0.234 3.766 30 N -0.441 5.441 31 C 0.116 3.884 32 H 0.050 0.950 33 H 0.030 0.970 34 H 0.082 0.918 35 H 0.362 0.638 36 H 0.255 0.745 37 H 0.113 0.887 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.080 0.920 41 H 0.163 0.837 42 H 0.177 0.823 43 H 0.442 0.558 44 H 0.060 0.940 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.798 -3.839 -35.846 36.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.075 3.925 3 H 0.066 0.934 4 N -0.396 5.396 5 C -0.348 4.348 6 H 0.078 0.922 7 C -0.256 4.256 8 N -0.636 5.636 9 Si 0.774 3.226 10 H -0.214 1.214 11 H -0.224 1.224 12 H -0.175 1.175 13 C -0.115 4.115 14 H 0.106 0.894 15 C -0.155 4.155 16 C 0.002 3.998 17 N -0.329 5.329 18 C 0.364 3.636 19 O -0.449 6.449 20 C -0.040 4.040 21 C -0.141 4.141 22 C -0.049 4.049 23 C -0.093 4.093 24 N -0.246 5.246 25 C 0.194 3.806 26 O -0.240 6.240 27 N -0.201 5.201 28 H 0.289 0.711 29 C -0.006 4.006 30 N -0.157 5.157 31 C -0.007 4.007 32 H 0.069 0.931 33 H 0.049 0.951 34 H 0.100 0.900 35 H 0.195 0.805 36 H 0.064 0.936 37 H 0.131 0.869 38 H 0.103 0.897 39 H 0.103 0.897 40 H 0.098 0.902 41 H 0.180 0.820 42 H 0.194 0.806 43 H 0.307 0.693 44 H 0.078 0.922 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.270 -3.265 -35.711 35.883 hybrid contribution -0.058 -1.133 1.065 1.556 sum -1.328 -4.397 -34.646 34.949 Atomic orbital electron populations 1.22255 0.96507 1.01431 1.01180 1.20391 0.93385 0.94889 0.83803 0.93442 1.42861 1.80089 1.09457 1.07238 1.19005 1.34144 0.94377 0.87235 0.92177 1.25399 1.02865 1.01918 0.95444 1.69866 1.55174 1.37458 1.01128 0.85545 0.78327 0.81799 0.76944 1.21370 1.22425 1.17548 1.22546 0.92313 1.01009 0.95623 0.89394 1.22812 0.99524 1.00832 0.92294 1.22279 0.84312 1.00036 0.93221 1.48540 1.15778 1.60176 1.08408 1.17751 0.81200 0.77794 0.86895 1.90817 1.43335 1.51212 1.59580 1.20533 0.91640 1.00310 0.91483 1.21640 0.97555 0.98888 0.96028 1.20692 0.98308 0.95538 0.90404 1.19950 0.95921 1.02976 0.90497 1.70675 1.17107 1.23710 1.13104 1.20304 0.86245 0.92487 0.81577 1.84820 1.74555 1.45237 1.19374 1.42967 1.18578 1.55168 1.03355 0.71079 1.18627 0.91926 1.02259 0.87741 1.66410 1.31189 1.16758 1.01365 1.22179 0.96610 1.01129 0.80766 0.93116 0.95071 0.89955 0.80522 0.93584 0.86866 0.89694 0.89739 0.90185 0.81969 0.80554 0.69278 0.92216 0.92835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.61 9.34 71.98 0.67 -3.93 16 2 C 0.18 6.29 2.40 44.99 0.11 6.39 16 3 H 0.05 1.74 8.05 -2.39 -0.02 1.72 16 4 N -0.75 -34.15 4.62 -322.94 -1.49 -35.64 16 5 C -0.22 -12.21 10.41 84.03 0.87 -11.33 16 6 H 0.06 3.70 8.06 -2.91 -0.02 3.67 16 7 C -0.07 -3.89 5.50 84.86 0.47 -3.43 16 8 N -0.98 -64.11 13.97 21.65 0.30 -63.81 16 9 Si 0.95 47.05 27.74 68.60 1.90 48.96 16 10 H -0.29 -14.39 7.11 99.48 0.71 -13.69 16 11 H -0.30 -14.97 7.11 99.48 0.71 -14.27 16 12 H -0.25 -11.22 6.52 99.48 0.65 -10.57 16 13 C -0.09 -2.56 2.62 -9.40 -0.02 -2.58 16 14 H 0.09 2.30 8.14 -2.38 -0.02 2.28 16 15 C -0.12 -2.11 5.59 31.78 0.18 -1.94 16 16 C 0.12 2.41 5.40 86.68 0.47 2.88 16 17 N -0.60 -16.73 3.34 -814.49 -2.72 -19.44 16 18 C 0.58 17.53 7.83 86.79 0.68 18.21 16 19 O -0.57 -21.52 16.54 -3.91 -0.06 -21.58 16 20 C 0.11 2.55 6.72 41.91 0.28 2.83 16 21 C -0.12 -2.34 9.55 22.34 0.21 -2.12 16 22 C -0.02 -0.37 10.16 22.38 0.23 -0.14 16 23 C 0.03 0.52 7.24 39.70 0.29 0.81 16 24 N -0.51 -8.86 11.30 -306.03 -3.46 -12.32 16 25 C 0.50 5.47 9.39 179.70 1.69 7.15 16 26 O -0.43 -1.81 13.62 -84.62 -1.15 -2.96 16 27 N -0.57 -5.67 6.25 -307.02 -1.92 -7.58 16 28 H 0.45 1.56 8.96 -92.71 -0.83 0.73 16 29 C 0.23 4.03 8.46 134.00 1.13 5.16 16 30 N -0.44 -8.87 6.85 -181.67 -1.24 -10.11 16 31 C 0.12 3.75 6.08 86.85 0.53 4.28 16 32 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.08 1.79 7.50 -2.38 -0.02 1.77 16 35 H 0.36 16.20 5.66 -92.71 -0.52 15.67 16 36 H 0.26 15.95 8.31 -92.70 -0.77 15.18 16 37 H 0.11 1.42 8.13 -2.39 -0.02 1.40 16 38 H 0.08 1.50 8.01 -2.39 -0.02 1.48 16 39 H 0.08 1.48 7.40 -2.38 -0.02 1.46 16 40 H 0.08 1.47 7.54 -2.39 -0.02 1.45 16 41 H 0.16 3.08 7.61 -2.91 -0.02 3.06 16 42 H 0.18 1.90 8.06 -2.91 -0.02 1.87 16 43 H 0.44 -3.24 9.06 -74.06 -0.67 -3.91 16 44 H 0.06 2.14 8.04 -2.39 -0.02 2.12 16 45 H 0.05 2.01 8.03 -2.39 -0.02 1.99 16 Total: -1.00 -83.25 374.49 -3.07 -86.33 By element: Atomic # 1 Polarization: 16.94 SS G_CDS: -1.01 Total: 15.93 kcal Atomic # 6 Polarization: 14.46 SS G_CDS: 7.78 Total: 22.24 kcal Atomic # 7 Polarization: -138.38 SS G_CDS: -10.53 Total: -148.91 kcal Atomic # 8 Polarization: -23.33 SS G_CDS: -1.22 Total: -24.55 kcal Atomic # 14 Polarization: 47.05 SS G_CDS: 1.90 Total: 48.96 kcal Total: -83.25 -3.07 -86.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279018465.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.829 kcal (2) G-P(sol) polarization free energy of solvation -83.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.325 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds