Wall clock time and date at job start Wed Apr 1 2020 03:57:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08999 * 109.46743 * 2 1 4 4 N 1.46502 * 109.47091 * 239.99723 * 2 1 3 5 5 C 1.36935 * 119.99570 * 85.00138 * 4 2 1 6 6 H 1.07999 * 120.00427 * 359.97438 * 5 4 2 7 7 C 1.38820 * 119.99558 * 180.02562 * 5 4 2 8 8 N 1.31614 * 119.99827 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99896 * 179.97438 * 7 5 4 10 10 H 1.48509 * 109.47001 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47351 * 119.99503 * 9 7 5 12 12 H 1.48501 * 109.47131 * 239.99942 * 9 7 5 13 13 C 1.52998 * 109.47114 * 119.99850 * 2 1 3 14 14 H 1.08998 * 110.89208 * 63.88185 * 13 2 1 15 15 C 1.55156 * 111.00318 * 299.99804 * 13 2 1 16 16 C 1.54324 * 102.94272 * 206.38440 * 15 13 2 17 17 N 1.47017 * 107.27277 * 22.19673 * 16 15 13 18 18 C 1.34777 * 125.65341 * 181.01725 * 17 16 15 19 19 O 1.21683 * 120.00207 * 180.02562 * 18 17 16 20 20 C 1.46826 * 119.99558 * 359.75256 * 18 17 16 21 21 C 1.41296 * 126.50187 * 0.29764 * 20 18 17 22 22 N 1.30374 * 108.46001 * 179.97438 * 21 20 18 23 23 N 1.39985 * 109.30801 * 0.02562 * 22 21 20 24 24 C 1.35990 * 108.16538 * 359.74609 * 23 22 21 25 25 N 1.37178 * 120.54571 * 179.64880 * 24 23 22 26 26 H 0.97002 * 119.87964 * 180.28222 * 25 24 23 27 27 C 1.36355 * 120.24334 * 0.55343 * 25 24 23 28 28 C 1.35244 * 119.83002 * 359.72675 * 27 25 24 29 29 C 1.34856 * 131.92404 * 179.97438 * 23 22 21 30 30 O 1.21827 * 120.11162 * 359.97438 * 29 23 22 31 31 C 1.47435 * 108.70127 * 1.28425 * 17 16 15 32 32 H 1.08993 * 109.46857 * 299.99735 * 1 2 3 33 33 H 1.09000 * 109.46996 * 60.00296 * 1 2 3 34 34 H 1.08999 * 109.46743 * 179.97438 * 1 2 3 35 35 H 0.96997 * 120.00007 * 264.99340 * 4 2 1 36 36 H 0.97003 * 119.99788 * 179.97438 * 8 7 5 37 37 H 1.09003 * 110.71620 * 88.02553 * 15 13 2 38 38 H 1.08998 * 110.87852 * 324.82289 * 15 13 2 39 39 H 1.09000 * 109.88923 * 262.77875 * 16 15 13 40 40 H 1.09009 * 110.00990 * 141.68564 * 16 15 13 41 41 H 1.08000 * 125.77151 * 359.97438 * 21 20 18 42 42 H 1.08002 * 120.08632 * 179.70437 * 27 25 24 43 43 H 1.08002 * 120.15111 * 180.02562 * 28 27 25 44 44 H 1.08999 * 110.36625 * 94.48143 * 31 17 16 45 45 H 1.08994 * 110.36368 * 216.80270 * 31 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6907 -1.1962 5 6 2.1492 -0.0075 -2.3757 6 1 1.8919 1.0403 -2.4243 7 6 2.6114 -0.6621 -3.5093 8 7 2.9244 -1.9391 -3.4501 9 14 2.7891 0.2695 -5.1186 10 1 2.3742 1.6818 -4.9214 11 1 4.2058 0.2267 -5.5615 12 1 1.9280 -0.3591 -6.1522 13 6 2.0400 -0.7212 1.2492 14 1 1.7470 -1.7710 1.2389 15 6 1.5426 -0.0176 2.5396 16 6 2.6245 -0.3899 3.5752 17 7 3.8423 -0.7377 2.8286 18 6 5.0091 -1.1382 3.3714 19 8 5.9558 -1.4008 2.6534 20 6 5.1397 -1.2519 4.8294 21 6 4.1356 -0.9837 5.7867 22 7 4.6292 -1.1988 6.9740 23 7 5.9613 -1.6116 6.8537 24 6 6.2755 -1.6499 5.5311 25 7 7.5324 -2.0184 5.1235 26 1 7.7473 -2.0384 4.1777 27 6 8.4793 -2.3621 6.0425 28 6 8.1787 -2.3338 7.3608 29 6 6.8869 -1.9486 7.7747 30 8 6.6082 -1.9196 8.9603 31 6 3.5777 -0.5697 1.3880 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 -0.3633 -1.0277 -0.0005 35 1 2.2492 -1.6318 -1.1525 36 1 3.2470 -2.3966 -4.2422 37 1 0.5702 -0.4072 2.8408 38 1 1.4975 1.0625 2.4003 39 1 2.2945 -1.2450 4.1651 40 1 2.8211 0.4586 4.2307 41 1 3.1293 -0.6560 5.5712 42 1 9.4666 -2.6564 5.7185 43 1 8.9248 -2.6046 8.0932 44 1 3.8952 0.4191 1.0568 45 1 4.0880 -1.3443 0.8157 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001279029119.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:57:01 Heat of formation + Delta-G solvation = 62.005283 kcal Electronic energy + Delta-G solvation = -29828.610274 eV Core-core repulsion = 25656.223380 eV Total energy + Delta-G solvation = -4172.386894 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -43.11085 -40.15338 -39.07020 -38.42279 -37.67571 -35.27305 -33.34186 -32.52905 -31.89701 -30.73797 -29.95953 -28.71043 -28.09658 -24.93638 -24.86940 -23.94830 -23.53299 -22.13353 -21.55276 -20.09869 -19.68697 -19.00332 -18.68227 -17.61416 -17.32290 -17.10135 -16.92027 -16.17729 -15.78313 -15.41347 -14.88406 -14.59462 -14.26689 -14.04485 -13.96521 -13.84910 -13.75319 -13.58454 -13.52795 -13.08975 -12.78416 -12.70435 -12.18298 -12.07644 -11.56285 -11.50240 -11.37103 -10.91387 -10.87362 -10.82810 -10.62759 -10.56329 -10.46704 -10.20924 -10.02378 -9.95812 -9.86947 -9.64843 -8.93417 -8.72141 -8.38318 -6.97874 -5.77649 -3.06478 0.36340 0.54469 1.46663 1.74839 2.07715 2.83847 2.92374 3.22136 3.42327 3.48034 3.50206 3.65428 3.97643 4.24910 4.31045 4.47388 4.57276 4.58773 4.67182 4.87464 4.93220 4.97006 5.03968 5.25940 5.38681 5.53148 5.60379 5.61236 5.80868 5.85182 5.86520 5.91972 6.00375 6.13834 6.21789 6.26960 6.32822 6.38066 6.45534 6.51459 6.60665 6.62626 6.83415 7.05265 7.40071 7.52777 7.69566 8.11967 8.40479 9.52094 10.08852 10.43115 11.44915 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.019203 B = 0.002332 C = 0.002116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.748346 B =12003.135846 C =13230.125368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.184 3.816 3 H 0.049 0.951 4 N -0.724 5.724 5 C -0.237 4.237 6 H 0.070 0.930 7 C -0.013 4.013 8 N -0.931 5.931 9 Si 0.904 3.096 10 H -0.281 1.281 11 H -0.292 1.292 12 H -0.292 1.292 13 C -0.102 4.102 14 H 0.083 0.917 15 C -0.125 4.125 16 C 0.089 3.911 17 N -0.608 5.608 18 C 0.611 3.389 19 O -0.557 6.557 20 C -0.300 4.300 21 C 0.114 3.886 22 N -0.264 5.264 23 N -0.357 5.357 24 C 0.371 3.629 25 N -0.587 5.587 26 H 0.449 0.551 27 C 0.191 3.809 28 C -0.307 4.307 29 C 0.563 3.437 30 O -0.489 6.489 31 C 0.122 3.878 32 H 0.038 0.962 33 H 0.053 0.947 34 H 0.046 0.954 35 H 0.384 0.616 36 H 0.254 0.746 37 H 0.083 0.917 38 H 0.080 0.920 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.216 0.784 42 H 0.193 0.807 43 H 0.180 0.820 44 H 0.073 0.927 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.121 0.444 20.319 21.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.074 3.926 3 H 0.067 0.933 4 N -0.366 5.366 5 C -0.368 4.368 6 H 0.088 0.912 7 C -0.209 4.209 8 N -0.580 5.580 9 Si 0.735 3.265 10 H -0.206 1.206 11 H -0.219 1.219 12 H -0.220 1.220 13 C -0.122 4.122 14 H 0.101 0.899 15 C -0.164 4.164 16 C -0.034 4.034 17 N -0.340 5.340 18 C 0.401 3.599 19 O -0.438 6.438 20 C -0.318 4.318 21 C -0.076 4.076 22 N -0.080 5.080 23 N -0.157 5.157 24 C 0.146 3.854 25 N -0.204 5.204 26 H 0.292 0.708 27 C 0.062 3.938 28 C -0.336 4.336 29 C 0.361 3.639 30 O -0.360 6.360 31 C 0.001 3.999 32 H 0.057 0.943 33 H 0.072 0.928 34 H 0.065 0.935 35 H 0.217 0.783 36 H 0.064 0.936 37 H 0.102 0.898 38 H 0.099 0.901 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.232 0.768 42 H 0.210 0.790 43 H 0.198 0.802 44 H 0.091 0.909 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 7.380 0.416 21.960 23.171 hybrid contribution 0.360 0.072 -2.185 2.216 sum 7.740 0.489 19.775 21.242 Atomic orbital electron populations 1.22448 0.99067 1.00915 1.00033 1.20153 0.91926 0.95166 0.85338 0.93275 1.42430 1.78147 1.10711 1.05279 1.19243 1.36441 0.93839 0.87266 0.91172 1.24728 1.02202 0.95947 0.98024 1.69665 1.50925 1.08638 1.28740 0.86164 0.77297 0.78803 0.84195 1.20595 1.21920 1.21965 1.22716 0.93586 1.00837 0.95028 0.89892 1.22711 0.97533 1.01745 0.94369 1.22440 0.85466 0.99787 0.95723 1.48214 1.10810 1.65954 1.09027 1.16401 0.81769 0.76703 0.85011 1.90764 1.38004 1.52615 1.62379 1.19465 0.93018 1.24547 0.94798 1.24992 1.00326 0.94056 0.88240 1.77614 0.87214 1.21413 1.21758 1.48122 1.11685 1.51224 1.04705 1.18711 0.86630 0.94406 0.85605 1.41200 1.06645 1.59934 1.12664 0.70818 1.22482 0.93740 0.88419 0.89135 1.21687 0.97103 1.18519 0.96295 1.17174 0.83779 0.77621 0.85285 1.90923 1.79713 1.49883 1.15476 1.22353 0.96030 1.02810 0.78715 0.94298 0.92803 0.93501 0.78274 0.93591 0.89799 0.90129 0.90986 0.91004 0.76778 0.79027 0.80231 0.90914 0.89593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.63 9.27 37.16 0.34 -2.29 16 2 C 0.18 3.23 2.43 -67.93 -0.17 3.07 16 3 H 0.05 0.89 8.01 -51.93 -0.42 0.47 16 4 N -0.72 -16.87 4.97 -53.42 -0.27 -17.13 16 5 C -0.24 -6.27 9.93 -15.06 -0.15 -6.42 16 6 H 0.07 1.82 7.83 -52.49 -0.41 1.40 16 7 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 8 N -0.93 -27.51 13.06 55.49 0.72 -26.78 16 9 Si 0.90 21.97 29.55 -169.99 -5.02 16.95 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 12 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 13 C -0.10 -1.43 2.67 -88.35 -0.24 -1.66 16 14 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 15 C -0.13 -1.23 5.28 -24.90 -0.13 -1.36 16 16 C 0.09 0.80 4.98 -3.07 -0.02 0.79 16 17 N -0.61 -7.82 3.33 -171.86 -0.57 -8.39 16 18 C 0.61 8.44 7.83 -12.79 -0.10 8.34 16 19 O -0.56 -9.13 16.06 5.20 0.08 -9.05 16 20 C -0.30 -3.51 6.11 -104.86 -0.64 -4.15 16 21 C 0.11 1.19 10.42 -17.01 -0.18 1.01 16 22 N -0.26 -3.45 12.54 30.85 0.39 -3.06 16 23 N -0.36 -4.49 3.79 -13.82 -0.05 -4.54 16 24 C 0.37 4.05 7.78 -153.53 -1.20 2.86 16 25 N -0.59 -4.23 5.39 -11.73 -0.06 -4.30 16 26 H 0.45 2.95 7.78 -40.82 -0.32 2.63 16 27 C 0.19 0.78 11.25 -16.61 -0.19 0.59 16 28 C -0.31 -2.08 9.95 -39.60 -0.39 -2.48 16 29 C 0.56 6.86 7.70 -15.17 -0.12 6.75 16 30 O -0.49 -7.73 17.91 5.08 0.09 -7.64 16 31 C 0.12 1.88 6.24 -2.40 -0.02 1.86 16 32 H 0.04 0.49 7.27 -51.93 -0.38 0.11 16 33 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.38 9.65 7.80 -40.82 -0.32 9.33 16 36 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 37 H 0.08 0.69 8.11 -51.93 -0.42 0.27 16 38 H 0.08 0.76 8.04 -51.93 -0.42 0.34 16 39 H 0.07 0.53 6.84 -51.93 -0.36 0.18 16 40 H 0.07 0.51 6.97 -51.92 -0.36 0.15 16 41 H 0.22 1.50 4.44 -52.49 -0.23 1.27 16 42 H 0.19 -0.22 8.06 -52.49 -0.42 -0.64 16 43 H 0.18 0.76 8.06 -52.49 -0.42 0.34 16 44 H 0.07 1.19 7.99 -51.93 -0.41 0.77 16 45 H 0.09 1.58 8.03 -51.93 -0.42 1.17 16 LS Contribution 373.23 15.07 5.62 5.62 Total: -1.00 -37.14 373.23 -8.05 -45.19 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: -5.71 Total: 6.67 kcal Atomic # 6 Polarization: 9.72 SS G_CDS: -3.27 Total: 6.45 kcal Atomic # 7 Polarization: -64.36 SS G_CDS: 0.16 Total: -64.20 kcal Atomic # 8 Polarization: -16.86 SS G_CDS: 0.17 Total: -16.68 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -37.14 -8.05 -45.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279029119.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.194 kcal (2) G-P(sol) polarization free energy of solvation -37.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.189 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds