Wall clock time and date at job start Wed Apr 1 2020 03:56:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08999 * 109.46743 * 2 1 4 4 N 1.46502 * 109.47091 * 239.99723 * 2 1 3 5 5 C 1.36935 * 119.99570 * 85.00138 * 4 2 1 6 6 H 1.07999 * 120.00427 * 359.97438 * 5 4 2 7 7 C 1.38820 * 119.99558 * 180.02562 * 5 4 2 8 8 N 1.31614 * 119.99827 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99896 * 179.97438 * 7 5 4 10 10 H 1.48509 * 109.47001 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47351 * 119.99503 * 9 7 5 12 12 H 1.48501 * 109.47131 * 239.99942 * 9 7 5 13 13 C 1.52998 * 109.47114 * 119.99850 * 2 1 3 14 14 H 1.08998 * 110.89208 * 63.88185 * 13 2 1 15 15 C 1.55156 * 111.00318 * 299.99804 * 13 2 1 16 16 C 1.54324 * 102.94272 * 206.38440 * 15 13 2 17 17 N 1.47017 * 107.27277 * 22.19673 * 16 15 13 18 18 C 1.34777 * 125.65341 * 181.01725 * 17 16 15 19 19 O 1.21683 * 120.00207 * 180.02562 * 18 17 16 20 20 C 1.46826 * 119.99558 * 359.75256 * 18 17 16 21 21 C 1.41296 * 126.50187 * 0.29764 * 20 18 17 22 22 N 1.30374 * 108.46001 * 179.97438 * 21 20 18 23 23 N 1.39985 * 109.30801 * 0.02562 * 22 21 20 24 24 C 1.35990 * 108.16538 * 359.74609 * 23 22 21 25 25 N 1.37178 * 120.54571 * 179.64880 * 24 23 22 26 26 H 0.97002 * 119.87964 * 180.28222 * 25 24 23 27 27 C 1.36355 * 120.24334 * 0.55343 * 25 24 23 28 28 C 1.35244 * 119.83002 * 359.72675 * 27 25 24 29 29 C 1.34856 * 131.92404 * 179.97438 * 23 22 21 30 30 O 1.21827 * 120.11162 * 359.97438 * 29 23 22 31 31 C 1.47435 * 108.70127 * 1.28425 * 17 16 15 32 32 H 1.08993 * 109.46857 * 299.99735 * 1 2 3 33 33 H 1.09000 * 109.46996 * 60.00296 * 1 2 3 34 34 H 1.08999 * 109.46743 * 179.97438 * 1 2 3 35 35 H 0.96997 * 120.00007 * 264.99340 * 4 2 1 36 36 H 0.97003 * 119.99788 * 179.97438 * 8 7 5 37 37 H 1.09003 * 110.71620 * 88.02553 * 15 13 2 38 38 H 1.08998 * 110.87852 * 324.82289 * 15 13 2 39 39 H 1.09000 * 109.88923 * 262.77875 * 16 15 13 40 40 H 1.09009 * 110.00990 * 141.68564 * 16 15 13 41 41 H 1.08000 * 125.77151 * 359.97438 * 21 20 18 42 42 H 1.08002 * 120.08632 * 179.70437 * 27 25 24 43 43 H 1.08002 * 120.15111 * 180.02562 * 28 27 25 44 44 H 1.08999 * 110.36625 * 94.48143 * 31 17 16 45 45 H 1.08994 * 110.36368 * 216.80270 * 31 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6907 -1.1962 5 6 2.1492 -0.0075 -2.3757 6 1 1.8919 1.0403 -2.4243 7 6 2.6114 -0.6621 -3.5093 8 7 2.9244 -1.9391 -3.4501 9 14 2.7891 0.2695 -5.1186 10 1 2.3742 1.6818 -4.9214 11 1 4.2058 0.2267 -5.5615 12 1 1.9280 -0.3591 -6.1522 13 6 2.0400 -0.7212 1.2492 14 1 1.7470 -1.7710 1.2389 15 6 1.5426 -0.0176 2.5396 16 6 2.6245 -0.3899 3.5752 17 7 3.8423 -0.7377 2.8286 18 6 5.0091 -1.1382 3.3714 19 8 5.9558 -1.4008 2.6534 20 6 5.1397 -1.2519 4.8294 21 6 4.1356 -0.9837 5.7867 22 7 4.6292 -1.1988 6.9740 23 7 5.9613 -1.6116 6.8537 24 6 6.2755 -1.6499 5.5311 25 7 7.5324 -2.0184 5.1235 26 1 7.7473 -2.0384 4.1777 27 6 8.4793 -2.3621 6.0425 28 6 8.1787 -2.3338 7.3608 29 6 6.8869 -1.9486 7.7747 30 8 6.6082 -1.9196 8.9603 31 6 3.5777 -0.5697 1.3880 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 -0.3633 -1.0277 -0.0005 35 1 2.2492 -1.6318 -1.1525 36 1 3.2470 -2.3966 -4.2422 37 1 0.5702 -0.4072 2.8408 38 1 1.4975 1.0625 2.4003 39 1 2.2945 -1.2450 4.1651 40 1 2.8211 0.4586 4.2307 41 1 3.1293 -0.6560 5.5712 42 1 9.4666 -2.6564 5.7185 43 1 8.9248 -2.6046 8.0932 44 1 3.8952 0.4191 1.0568 45 1 4.0880 -1.3443 0.8157 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001279029119.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:56:58 Heat of formation + Delta-G solvation = 34.316372 kcal Electronic energy + Delta-G solvation = -29829.810955 eV Core-core repulsion = 25656.223380 eV Total energy + Delta-G solvation = -4173.587575 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -43.92253 -41.15244 -39.97878 -39.18661 -38.82101 -36.75980 -34.43491 -34.01000 -32.58990 -32.08228 -30.88803 -30.01748 -29.37883 -26.07676 -25.69452 -25.51409 -24.38763 -23.14656 -22.69275 -21.02920 -20.96312 -19.87891 -19.35466 -19.07773 -18.32676 -18.07192 -17.92967 -17.27609 -16.77504 -16.51120 -16.38775 -15.66011 -15.49556 -15.29383 -14.97134 -14.78295 -14.54751 -14.40631 -14.37450 -14.29391 -14.08853 -13.89441 -13.48692 -13.30825 -13.09216 -12.83856 -12.52623 -12.37343 -12.31412 -12.12047 -11.93293 -11.78281 -11.65729 -11.48662 -11.30928 -11.25061 -11.06139 -10.90286 -10.78307 -9.71679 -9.19021 -8.94010 -7.89302 -5.15817 -0.32968 -0.18611 0.68706 0.90833 1.42511 1.48634 1.49085 1.58371 1.92239 2.05085 2.27020 2.59399 2.96789 3.30108 3.44468 3.52911 3.62164 3.68138 3.76408 3.88493 3.92853 4.00679 4.24851 4.35013 4.40346 4.47508 4.51637 4.63203 4.71899 4.73712 4.92446 4.93998 4.95389 5.04762 5.15465 5.17081 5.23210 5.29480 5.40291 5.48878 5.58836 5.62044 5.71516 5.72735 5.82627 6.33691 6.51497 6.58981 7.06603 7.39631 8.18451 8.38821 9.34549 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.019203 B = 0.002332 C = 0.002116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.748346 B =12003.135846 C =13230.125368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.178 3.822 3 H 0.047 0.953 4 N -0.737 5.737 5 C -0.226 4.226 6 H 0.076 0.924 7 C -0.079 4.079 8 N -0.971 5.971 9 Si 0.964 3.036 10 H -0.265 1.265 11 H -0.298 1.298 12 H -0.297 1.297 13 C -0.094 4.094 14 H 0.076 0.924 15 C -0.113 4.113 16 C 0.081 3.919 17 N -0.608 5.608 18 C 0.608 3.392 19 O -0.594 6.594 20 C -0.318 4.318 21 C 0.134 3.866 22 N -0.307 5.307 23 N -0.367 5.367 24 C 0.372 3.628 25 N -0.578 5.578 26 H 0.454 0.546 27 C 0.225 3.775 28 C -0.320 4.320 29 C 0.544 3.456 30 O -0.546 6.546 31 C 0.128 3.872 32 H 0.082 0.918 33 H 0.031 0.969 34 H 0.041 0.959 35 H 0.370 0.630 36 H 0.247 0.753 37 H 0.112 0.888 38 H 0.092 0.908 39 H 0.096 0.904 40 H 0.101 0.899 41 H 0.247 0.753 42 H 0.257 0.743 43 H 0.206 0.794 44 H 0.059 0.941 45 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.150 1.428 21.521 22.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.070 3.930 3 H 0.065 0.935 4 N -0.377 5.377 5 C -0.358 4.358 6 H 0.094 0.906 7 C -0.271 4.271 8 N -0.622 5.622 9 Si 0.795 3.205 10 H -0.189 1.189 11 H -0.226 1.226 12 H -0.225 1.225 13 C -0.114 4.114 14 H 0.094 0.906 15 C -0.151 4.151 16 C -0.040 4.040 17 N -0.339 5.339 18 C 0.400 3.600 19 O -0.477 6.477 20 C -0.336 4.336 21 C -0.056 4.056 22 N -0.124 5.124 23 N -0.167 5.167 24 C 0.146 3.854 25 N -0.196 5.196 26 H 0.299 0.701 27 C 0.097 3.903 28 C -0.348 4.348 29 C 0.346 3.654 30 O -0.422 6.422 31 C 0.006 3.994 32 H 0.101 0.899 33 H 0.050 0.950 34 H 0.060 0.940 35 H 0.202 0.798 36 H 0.056 0.944 37 H 0.131 0.869 38 H 0.110 0.890 39 H 0.114 0.886 40 H 0.119 0.881 41 H 0.263 0.737 42 H 0.273 0.727 43 H 0.223 0.777 44 H 0.077 0.923 45 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 7.374 1.451 23.191 24.379 hybrid contribution 0.402 -0.213 -2.549 2.589 sum 7.776 1.237 20.642 22.093 Atomic orbital electron populations 1.22290 0.97096 1.00908 1.01082 1.20425 0.93092 0.94810 0.84665 0.93510 1.42671 1.78397 1.10263 1.06389 1.19620 1.33866 0.94065 0.88276 0.90614 1.25469 1.03592 0.96819 1.01257 1.69817 1.53184 1.10184 1.29046 0.85193 0.76524 0.78366 0.80457 1.18939 1.22601 1.22457 1.22521 0.92515 1.00612 0.95730 0.90602 1.22745 0.98907 1.02050 0.91431 1.22780 0.83500 1.02002 0.95713 1.48220 1.11894 1.65651 1.08133 1.16675 0.81511 0.76181 0.85675 1.90733 1.39300 1.54322 1.63329 1.19286 0.94148 1.26569 0.93615 1.25456 1.01060 0.92085 0.86950 1.77574 0.88148 1.23388 1.23251 1.48279 1.11799 1.51261 1.05323 1.18956 0.87884 0.93556 0.85027 1.41538 1.05861 1.58502 1.13689 0.70148 1.23444 0.94755 0.84629 0.87522 1.21935 0.95150 1.19506 0.98166 1.18217 0.85115 0.77200 0.84827 1.90884 1.80719 1.53224 1.17372 1.22051 0.96768 1.00429 0.80165 0.89913 0.95022 0.94025 0.79829 0.94370 0.86937 0.88968 0.88576 0.88096 0.73707 0.72683 0.77673 0.92292 0.93806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.60 9.27 71.98 0.67 -3.93 16 2 C 0.18 6.10 2.43 44.99 0.11 6.21 16 3 H 0.05 1.63 8.01 -2.39 -0.02 1.61 16 4 N -0.74 -34.93 4.97 -322.93 -1.61 -36.54 16 5 C -0.23 -12.09 9.93 84.04 0.83 -11.25 16 6 H 0.08 3.89 7.83 -2.91 -0.02 3.87 16 7 C -0.08 -4.51 5.50 84.86 0.47 -4.04 16 8 N -0.97 -59.19 13.06 21.65 0.28 -58.91 16 9 Si 0.96 45.90 29.55 68.60 2.03 47.92 16 10 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 11 H -0.30 -14.37 7.11 99.48 0.71 -13.67 16 12 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 13 C -0.09 -2.52 2.67 -9.33 -0.02 -2.55 16 14 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 15 C -0.11 -1.78 5.28 31.78 0.17 -1.61 16 16 C 0.08 1.19 4.98 86.73 0.43 1.62 16 17 N -0.61 -14.98 3.33 -815.86 -2.71 -17.70 16 18 C 0.61 16.50 7.83 86.49 0.68 17.18 16 19 O -0.59 -19.75 16.06 -4.29 -0.07 -19.82 16 20 C -0.32 -7.10 6.11 -20.02 -0.12 -7.22 16 21 C 0.13 2.56 10.42 85.66 0.89 3.46 16 22 N -0.31 -7.90 12.54 -56.31 -0.71 -8.61 16 23 N -0.37 -9.12 3.79 -315.77 -1.20 -10.31 16 24 C 0.37 7.74 7.78 132.61 1.03 8.77 16 25 N -0.58 -7.06 5.39 -191.03 -1.03 -8.09 16 26 H 0.45 5.03 7.78 -92.71 -0.72 4.31 16 27 C 0.22 1.00 11.25 83.30 0.94 1.94 16 28 C -0.32 -3.66 9.95 22.26 0.22 -3.44 16 29 C 0.54 13.25 7.70 84.91 0.65 13.90 16 30 O -0.55 -17.98 17.91 -4.75 -0.09 -18.06 16 31 C 0.13 4.01 6.24 86.93 0.54 4.55 16 32 H 0.08 1.75 7.27 -2.39 -0.02 1.73 16 33 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.37 19.32 7.80 -92.71 -0.72 18.60 16 36 H 0.25 14.74 8.31 -92.71 -0.77 13.97 16 37 H 0.11 1.23 8.11 -2.39 -0.02 1.21 16 38 H 0.09 1.31 8.04 -2.39 -0.02 1.29 16 39 H 0.10 1.01 6.84 -2.39 -0.02 0.99 16 40 H 0.10 0.98 6.97 -2.38 -0.02 0.96 16 41 H 0.25 2.61 4.44 -2.91 -0.01 2.59 16 42 H 0.26 -2.18 8.06 -2.91 -0.02 -2.21 16 43 H 0.21 1.19 8.06 -2.91 -0.02 1.17 16 44 H 0.06 1.97 7.99 -2.39 -0.02 1.95 16 45 H 0.04 1.72 8.03 -2.39 -0.02 1.70 16 Total: -1.00 -88.57 373.23 2.01 -86.56 By element: Atomic # 1 Polarization: 20.36 SS G_CDS: -0.38 Total: 19.98 kcal Atomic # 6 Polarization: 16.09 SS G_CDS: 7.49 Total: 23.57 kcal Atomic # 7 Polarization: -133.19 SS G_CDS: -6.97 Total: -140.16 kcal Atomic # 8 Polarization: -37.72 SS G_CDS: -0.15 Total: -37.88 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 2.03 Total: 47.92 kcal Total: -88.57 2.01 -86.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279029119.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.875 kcal (2) G-P(sol) polarization free energy of solvation -88.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.558 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds