Wall clock time and date at job start Wed Apr 1 2020 03:56:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.47661 * 2 1 4 4 N 1.46499 * 109.47237 * 239.99722 * 2 1 3 5 5 C 1.36938 * 120.00138 * 85.27979 * 4 2 1 6 6 H 1.08004 * 119.99803 * 359.72230 * 5 4 2 7 7 C 1.38809 * 120.00361 * 179.72226 * 5 4 2 8 8 N 1.31616 * 119.99915 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00139 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47195 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.46926 * 120.00037 * 9 7 5 12 12 H 1.48497 * 109.47274 * 240.00190 * 9 7 5 13 13 C 1.53002 * 109.46824 * 119.99927 * 2 1 3 14 14 H 1.08999 * 110.88595 * 59.89736 * 13 2 1 15 15 C 1.55167 * 111.00357 * 183.81742 * 13 2 1 16 16 C 1.54327 * 102.94030 * 153.57643 * 15 13 2 17 17 N 1.47018 * 107.27013 * 337.81040 * 16 15 13 18 18 C 1.34780 * 125.64592 * 178.90744 * 17 16 15 19 19 O 1.21672 * 119.99729 * 180.02562 * 18 17 16 20 20 C 1.46896 * 120.00122 * 0.03881 * 18 17 16 21 21 C 1.36387 * 126.76331 * 0.02562 * 20 18 17 22 22 N 1.35449 * 109.77718 * 180.02562 * 21 20 18 23 23 H 0.96998 * 124.79632 * 179.97438 * 22 21 20 24 24 C 1.38054 * 110.41119 * 0.02562 * 22 21 20 25 25 C 1.39116 * 133.15438 * 180.02562 * 24 22 21 26 26 C 1.37752 * 119.96463 * 179.97438 * 25 24 22 27 27 C 1.38942 * 120.60830 * 0.02562 * 26 25 24 28 28 F 1.35105 * 119.87589 * 180.02562 * 27 26 25 29 29 C 1.37951 * 120.25228 * 359.97438 * 27 26 25 30 30 C 1.39294 * 119.64478 * 359.73791 * 29 27 26 31 31 C 1.47420 * 108.70742 * 358.93952 * 17 16 15 32 32 H 1.08993 * 109.47333 * 305.08718 * 1 2 3 33 33 H 1.09006 * 109.46695 * 65.08560 * 1 2 3 34 34 H 1.09003 * 109.47091 * 185.08197 * 1 2 3 35 35 H 0.97003 * 120.00416 * 265.00324 * 4 2 1 36 36 H 0.97001 * 120.00440 * 179.97438 * 8 7 5 37 37 H 1.09001 * 110.71793 * 271.93957 * 15 13 2 38 38 H 1.08999 * 110.71795 * 35.21163 * 15 13 2 39 39 H 1.08998 * 109.88158 * 218.38756 * 16 15 13 40 40 H 1.08995 * 110.00802 * 97.29618 * 16 15 13 41 41 H 1.08003 * 125.11229 * 0.02562 * 21 20 18 42 42 H 1.08004 * 120.01592 * 359.96871 * 25 24 22 43 43 H 1.07999 * 119.69590 * 179.97438 * 26 25 24 44 44 H 1.07999 * 120.17798 * 180.02562 * 29 27 26 45 45 H 1.09005 * 110.37016 * 265.29431 * 31 17 16 46 46 H 1.08997 * 110.46403 * 143.01836 * 31 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 2.1545 -0.0062 -2.3743 6 1 1.8977 1.0417 -2.4229 7 6 2.6227 -0.6592 -3.5062 8 7 2.9353 -1.9363 -3.4472 9 14 2.8079 0.2744 -5.1136 10 1 2.3924 1.6864 -4.9167 11 1 4.2268 0.2326 -5.5496 12 1 1.9522 -0.3536 -6.1522 13 6 2.0399 -0.7213 1.2493 14 1 1.6878 -1.7525 1.2735 15 6 3.5880 -0.6591 1.3344 16 6 3.8557 -0.7751 2.8499 17 7 2.6288 -0.3561 3.5432 18 6 2.4495 -0.3352 4.8788 19 8 1.3868 0.0317 5.3443 20 6 3.5370 -0.7551 5.7726 21 6 4.7764 -1.1878 5.4028 22 7 5.5053 -1.4864 6.5048 23 1 6.4181 -1.8142 6.4926 24 6 4.7650 -1.2594 7.6477 25 6 5.0401 -1.4033 9.0038 26 6 4.0779 -1.0893 9.9382 27 6 2.8290 -0.6285 9.5401 28 9 1.8964 -0.3243 10.4692 29 6 2.5379 -0.4794 8.1999 30 6 3.5051 -0.7881 7.2463 31 6 1.6270 0.0367 2.5356 32 1 -0.3633 0.5907 0.8408 33 1 -0.3633 0.4330 -0.9321 34 1 -0.3633 -1.0237 0.0910 35 1 2.2490 -1.6319 -1.1526 36 1 3.2621 -2.3928 -4.2383 37 1 4.0375 -1.4948 0.7982 38 1 3.9575 0.2913 0.9492 39 1 4.6820 -0.1225 3.1314 40 1 4.0936 -1.8068 3.1086 41 1 5.1244 -1.2787 4.3844 42 1 6.0076 -1.7612 9.3238 43 1 4.2960 -1.2030 10.9898 44 1 1.5669 -0.1207 7.8919 45 1 1.6591 1.1134 2.3682 46 1 0.6292 -0.2676 2.8515 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001279047238.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:56:16 Heat of formation + Delta-G solvation = -2.504694 kcal Electronic energy + Delta-G solvation = -29302.312315 eV Core-core repulsion = 25107.208097 eV Total energy + Delta-G solvation = -4195.104218 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 2.74 seconds Orbital eigenvalues (eV) -48.98928 -41.84711 -39.77294 -37.60849 -37.07783 -35.22290 -32.72018 -32.24879 -30.66256 -29.83706 -29.46596 -28.91321 -27.34352 -24.92128 -23.68449 -23.55391 -22.30054 -21.71626 -21.43873 -19.66277 -19.53599 -18.18371 -17.50026 -17.21475 -16.92518 -16.27624 -16.15460 -15.79075 -15.43600 -15.24387 -14.82894 -14.59877 -14.20821 -13.98391 -13.76673 -13.59379 -13.44858 -13.26883 -13.14142 -12.98809 -12.64364 -12.41933 -12.38308 -12.10901 -11.71397 -11.65389 -11.32334 -11.21211 -10.92425 -10.75107 -10.60114 -10.40320 -10.21349 -10.13608 -9.96384 -9.82139 -9.66306 -8.94890 -8.62737 -8.60969 -8.14368 -6.99298 -5.80352 -3.08509 0.53007 1.00468 1.69263 2.53398 3.00965 3.15004 3.40229 3.46879 3.48374 3.54764 3.96698 4.22697 4.39750 4.40776 4.54718 4.67370 4.71688 4.82573 4.93443 4.96463 5.03920 5.24972 5.25907 5.30296 5.42512 5.51445 5.61597 5.64978 5.82052 5.86849 5.89427 5.90370 5.97866 6.04209 6.13167 6.18168 6.19270 6.29609 6.35047 6.45856 6.56901 6.63749 6.65511 6.86320 6.92937 7.09327 7.57018 7.68182 8.25919 8.38368 9.49989 10.07134 10.42109 11.42324 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.026218 B = 0.002024 C = 0.001909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.727931 B =13828.874845 C =14664.320064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.185 3.815 3 H 0.050 0.950 4 N -0.722 5.722 5 C -0.234 4.234 6 H 0.070 0.930 7 C -0.014 4.014 8 N -0.933 5.933 9 Si 0.904 3.096 10 H -0.281 1.281 11 H -0.292 1.292 12 H -0.292 1.292 13 C -0.102 4.102 14 H 0.081 0.919 15 C -0.116 4.116 16 C 0.088 3.912 17 N -0.613 5.613 18 C 0.601 3.399 19 O -0.545 6.545 20 C -0.221 4.221 21 C 0.104 3.896 22 N -0.577 5.577 23 H 0.422 0.578 24 C 0.074 3.926 25 C -0.095 4.095 26 C -0.133 4.133 27 C 0.076 3.924 28 F -0.140 7.140 29 C -0.097 4.097 30 C -0.037 4.037 31 C 0.116 3.884 32 H 0.038 0.962 33 H 0.055 0.945 34 H 0.045 0.955 35 H 0.383 0.617 36 H 0.254 0.746 37 H 0.088 0.912 38 H 0.081 0.919 39 H 0.068 0.932 40 H 0.069 0.931 41 H 0.195 0.805 42 H 0.133 0.867 43 H 0.139 0.861 44 H 0.147 0.853 45 H 0.070 0.930 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.223 -0.365 24.518 25.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.075 3.925 3 H 0.068 0.932 4 N -0.363 5.363 5 C -0.365 4.365 6 H 0.088 0.912 7 C -0.210 4.210 8 N -0.582 5.582 9 Si 0.736 3.264 10 H -0.206 1.206 11 H -0.220 1.220 12 H -0.220 1.220 13 C -0.122 4.122 14 H 0.100 0.900 15 C -0.154 4.154 16 C -0.034 4.034 17 N -0.347 5.347 18 C 0.392 3.608 19 O -0.424 6.424 20 C -0.231 4.231 21 C -0.028 4.028 22 N -0.178 5.178 23 H 0.260 0.740 24 C -0.031 4.031 25 C -0.116 4.116 26 C -0.153 4.153 27 C 0.056 3.944 28 F -0.119 7.119 29 C -0.117 4.117 30 C -0.042 4.042 31 C -0.006 4.006 32 H 0.057 0.943 33 H 0.074 0.926 34 H 0.064 0.936 35 H 0.217 0.783 36 H 0.064 0.936 37 H 0.106 0.894 38 H 0.099 0.901 39 H 0.086 0.914 40 H 0.087 0.913 41 H 0.212 0.788 42 H 0.151 0.849 43 H 0.157 0.843 44 H 0.165 0.835 45 H 0.088 0.912 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 7.735 -0.059 24.739 25.920 hybrid contribution 0.539 -0.054 -0.917 1.065 sum 8.273 -0.112 23.822 25.218 Atomic orbital electron populations 1.22490 0.99188 1.00675 1.00483 1.20133 0.91850 0.95152 0.85383 0.93244 1.42375 1.78143 1.10582 1.05233 1.19266 1.35976 0.93873 0.87418 0.91165 1.24714 1.02322 0.95970 0.98003 1.69661 1.51063 1.08647 1.28808 0.86157 0.77254 0.78853 0.84173 1.20585 1.21965 1.21961 1.22682 0.95055 1.00322 0.94176 0.90042 1.22599 0.96631 1.04271 0.91908 1.22463 0.87435 0.99094 0.94454 1.48342 1.15917 1.65745 1.04667 1.16782 0.86436 0.77660 0.79952 1.90776 1.27373 1.49057 1.75154 1.19967 0.95396 1.15874 0.91887 1.23097 0.91119 0.96151 0.92450 1.41606 1.15275 1.56818 1.04115 0.73961 1.18273 0.92055 1.04485 0.88322 1.19823 1.00054 1.03310 0.88398 1.20769 0.91966 1.02189 1.00396 1.17372 0.87378 1.03829 0.85862 1.91496 1.64488 1.91145 1.64773 1.20611 1.00756 1.00486 0.89813 1.18413 0.92718 1.01487 0.91608 1.22297 0.92335 0.99311 0.86652 0.94304 0.92573 0.93564 0.78321 0.93631 0.89357 0.90052 0.91393 0.91326 0.78824 0.84926 0.84269 0.83541 0.91225 0.90352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.92 9.23 37.15 0.34 -2.58 16 2 C 0.19 3.36 2.40 -67.93 -0.16 3.19 16 3 H 0.05 0.92 8.07 -51.93 -0.42 0.50 16 4 N -0.72 -16.65 4.88 -53.43 -0.26 -16.91 16 5 C -0.23 -6.14 9.93 -15.06 -0.15 -6.29 16 6 H 0.07 1.81 7.83 -52.48 -0.41 1.40 16 7 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 8 N -0.93 -27.00 13.06 55.49 0.72 -26.28 16 9 Si 0.90 21.72 29.55 -169.99 -5.02 16.70 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 12 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 13 C -0.10 -1.51 2.63 -88.47 -0.23 -1.74 16 14 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 15 C -0.12 -1.51 6.19 -24.89 -0.15 -1.67 16 16 C 0.09 0.90 5.00 -3.06 -0.02 0.89 16 17 N -0.61 -8.06 3.33 -171.99 -0.57 -8.63 16 18 C 0.60 8.86 7.83 -12.76 -0.10 8.76 16 19 O -0.54 -9.88 16.41 5.21 0.09 -9.80 16 20 C -0.22 -2.66 6.25 -103.31 -0.65 -3.30 16 21 C 0.10 0.84 10.37 -16.62 -0.17 0.66 16 22 N -0.58 -3.70 5.99 -10.47 -0.06 -3.76 16 23 H 0.42 1.13 8.96 -40.82 -0.37 0.76 16 24 C 0.07 0.66 7.26 -83.93 -0.61 0.05 16 25 C -0.10 -0.69 10.07 -39.43 -0.40 -1.09 16 26 C -0.13 -1.09 9.99 -39.50 -0.39 -1.49 16 27 C 0.08 0.83 7.29 -39.43 -0.29 0.54 16 28 F -0.14 -1.63 17.26 2.25 0.04 -1.59 16 29 C -0.10 -1.21 9.83 -39.29 -0.39 -1.60 16 30 C -0.04 -0.45 6.26 -104.95 -0.66 -1.11 16 31 C 0.12 1.63 5.52 -2.53 -0.01 1.62 16 32 H 0.04 0.58 7.60 -51.93 -0.39 0.18 16 33 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 34 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.38 9.42 7.80 -40.82 -0.32 9.10 16 36 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 37 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 38 H 0.08 1.13 8.04 -51.93 -0.42 0.71 16 39 H 0.07 0.55 7.02 -51.93 -0.36 0.19 16 40 H 0.07 0.58 6.85 -51.93 -0.36 0.22 16 41 H 0.20 1.05 4.29 -52.48 -0.22 0.83 16 42 H 0.13 0.53 8.06 -52.48 -0.42 0.11 16 43 H 0.14 0.80 8.06 -52.49 -0.42 0.38 16 44 H 0.15 2.00 7.45 -52.49 -0.39 1.61 16 45 H 0.07 0.97 8.03 -51.93 -0.42 0.56 16 46 H 0.08 1.16 8.04 -51.93 -0.42 0.74 16 LS Contribution 380.31 15.07 5.73 5.73 Total: -1.00 -33.34 380.31 -9.64 -42.98 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: -6.17 Total: 7.19 kcal Atomic # 6 Polarization: -1.50 SS G_CDS: -4.13 Total: -5.64 kcal Atomic # 7 Polarization: -55.41 SS G_CDS: -0.17 Total: -55.58 kcal Atomic # 8 Polarization: -9.88 SS G_CDS: 0.09 Total: -9.80 kcal Atomic # 9 Polarization: -1.63 SS G_CDS: 0.04 Total: -1.59 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -33.34 -9.64 -42.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279047238.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.478 kcal (2) G-P(sol) polarization free energy of solvation -33.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.74 seconds