Wall clock time and date at job start Wed Apr 1 2020 03:56:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.47661 * 2 1 4 4 N 1.46499 * 109.47237 * 239.99722 * 2 1 3 5 5 C 1.36938 * 120.00138 * 85.27979 * 4 2 1 6 6 H 1.08004 * 119.99803 * 359.72230 * 5 4 2 7 7 C 1.38809 * 120.00361 * 179.72226 * 5 4 2 8 8 N 1.31616 * 119.99915 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00139 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47195 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.46926 * 120.00037 * 9 7 5 12 12 H 1.48497 * 109.47274 * 240.00190 * 9 7 5 13 13 C 1.53002 * 109.46824 * 119.99927 * 2 1 3 14 14 H 1.08999 * 110.88595 * 59.89736 * 13 2 1 15 15 C 1.55167 * 111.00357 * 183.81742 * 13 2 1 16 16 C 1.54327 * 102.94030 * 153.57643 * 15 13 2 17 17 N 1.47018 * 107.27013 * 337.81040 * 16 15 13 18 18 C 1.34780 * 125.64592 * 178.90744 * 17 16 15 19 19 O 1.21672 * 119.99729 * 180.02562 * 18 17 16 20 20 C 1.46896 * 120.00122 * 0.03881 * 18 17 16 21 21 C 1.36387 * 126.76331 * 0.02562 * 20 18 17 22 22 N 1.35449 * 109.77718 * 180.02562 * 21 20 18 23 23 H 0.96998 * 124.79632 * 179.97438 * 22 21 20 24 24 C 1.38054 * 110.41119 * 0.02562 * 22 21 20 25 25 C 1.39116 * 133.15438 * 180.02562 * 24 22 21 26 26 C 1.37752 * 119.96463 * 179.97438 * 25 24 22 27 27 C 1.38942 * 120.60830 * 0.02562 * 26 25 24 28 28 F 1.35105 * 119.87589 * 180.02562 * 27 26 25 29 29 C 1.37951 * 120.25228 * 359.97438 * 27 26 25 30 30 C 1.39294 * 119.64478 * 359.73791 * 29 27 26 31 31 C 1.47420 * 108.70742 * 358.93952 * 17 16 15 32 32 H 1.08993 * 109.47333 * 305.08718 * 1 2 3 33 33 H 1.09006 * 109.46695 * 65.08560 * 1 2 3 34 34 H 1.09003 * 109.47091 * 185.08197 * 1 2 3 35 35 H 0.97003 * 120.00416 * 265.00324 * 4 2 1 36 36 H 0.97001 * 120.00440 * 179.97438 * 8 7 5 37 37 H 1.09001 * 110.71793 * 271.93957 * 15 13 2 38 38 H 1.08999 * 110.71795 * 35.21163 * 15 13 2 39 39 H 1.08998 * 109.88158 * 218.38756 * 16 15 13 40 40 H 1.08995 * 110.00802 * 97.29618 * 16 15 13 41 41 H 1.08003 * 125.11229 * 0.02562 * 21 20 18 42 42 H 1.08004 * 120.01592 * 359.96871 * 25 24 22 43 43 H 1.07999 * 119.69590 * 179.97438 * 26 25 24 44 44 H 1.07999 * 120.17798 * 180.02562 * 29 27 26 45 45 H 1.09005 * 110.37016 * 265.29431 * 31 17 16 46 46 H 1.08997 * 110.46403 * 143.01836 * 31 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 2.1545 -0.0062 -2.3743 6 1 1.8977 1.0417 -2.4229 7 6 2.6227 -0.6592 -3.5062 8 7 2.9353 -1.9363 -3.4472 9 14 2.8079 0.2744 -5.1136 10 1 2.3924 1.6864 -4.9167 11 1 4.2268 0.2326 -5.5496 12 1 1.9522 -0.3536 -6.1522 13 6 2.0399 -0.7213 1.2493 14 1 1.6878 -1.7525 1.2735 15 6 3.5880 -0.6591 1.3344 16 6 3.8557 -0.7751 2.8499 17 7 2.6288 -0.3561 3.5432 18 6 2.4495 -0.3352 4.8788 19 8 1.3868 0.0317 5.3443 20 6 3.5370 -0.7551 5.7726 21 6 4.7764 -1.1878 5.4028 22 7 5.5053 -1.4864 6.5048 23 1 6.4181 -1.8142 6.4926 24 6 4.7650 -1.2594 7.6477 25 6 5.0401 -1.4033 9.0038 26 6 4.0779 -1.0893 9.9382 27 6 2.8290 -0.6285 9.5401 28 9 1.8964 -0.3243 10.4692 29 6 2.5379 -0.4794 8.1999 30 6 3.5051 -0.7881 7.2463 31 6 1.6270 0.0367 2.5356 32 1 -0.3633 0.5907 0.8408 33 1 -0.3633 0.4330 -0.9321 34 1 -0.3633 -1.0237 0.0910 35 1 2.2490 -1.6319 -1.1526 36 1 3.2621 -2.3928 -4.2383 37 1 4.0375 -1.4948 0.7982 38 1 3.9575 0.2913 0.9492 39 1 4.6820 -0.1225 3.1314 40 1 4.0936 -1.8068 3.1086 41 1 5.1244 -1.2787 4.3844 42 1 6.0076 -1.7612 9.3238 43 1 4.2960 -1.2030 10.9898 44 1 1.5669 -0.1207 7.8919 45 1 1.6591 1.1134 2.3682 46 1 0.6292 -0.2676 2.8515 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001279047238.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:56:12 Heat of formation + Delta-G solvation = -23.621461 kcal Electronic energy + Delta-G solvation = -29303.228007 eV Core-core repulsion = 25107.208097 eV Total energy + Delta-G solvation = -4196.019910 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 4.89 seconds Orbital eigenvalues (eV) -49.85249 -42.56442 -40.83604 -38.84936 -37.78186 -36.73874 -34.28439 -33.20892 -31.95010 -30.92096 -30.26020 -30.13219 -28.56594 -26.34180 -25.18013 -24.30804 -23.11154 -22.78443 -22.51167 -21.05425 -20.42449 -19.13565 -18.89676 -18.29501 -17.85069 -17.38792 -17.09092 -16.67390 -16.47595 -16.22503 -16.11851 -15.62967 -15.48813 -15.17833 -14.87032 -14.76418 -14.58454 -14.30099 -14.09879 -13.93569 -13.81359 -13.69674 -13.53807 -13.39522 -13.15091 -12.82702 -12.68983 -12.41376 -12.26344 -12.10140 -12.07182 -11.93047 -11.61163 -11.52433 -11.34298 -11.02575 -10.89750 -10.89038 -9.68073 -9.31881 -8.94609 -8.88188 -7.88844 -5.15198 -0.18832 0.27307 0.89265 1.49632 1.51419 1.59833 1.85695 2.09704 2.28943 2.59949 2.70502 3.22455 3.42541 3.47139 3.58254 3.67636 3.78565 3.79821 3.90344 4.05052 4.19349 4.26182 4.30996 4.31067 4.43616 4.51064 4.55573 4.61854 4.62290 4.72704 4.75731 4.91835 4.96292 5.01122 5.08393 5.13228 5.18053 5.21481 5.26051 5.36337 5.41291 5.43230 5.45569 5.58362 5.63268 5.93275 6.33839 6.48925 6.55762 7.20484 7.41070 8.16843 8.41070 9.34512 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.026218 B = 0.002024 C = 0.001909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.727931 B =13828.874845 C =14664.320064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.183 3.817 3 H 0.048 0.952 4 N -0.729 5.729 5 C -0.228 4.228 6 H 0.072 0.928 7 C -0.074 4.074 8 N -0.967 5.967 9 Si 0.963 3.037 10 H -0.269 1.269 11 H -0.294 1.294 12 H -0.300 1.300 13 C -0.094 4.094 14 H 0.076 0.924 15 C -0.112 4.112 16 C 0.091 3.909 17 N -0.613 5.613 18 C 0.595 3.405 19 O -0.597 6.597 20 C -0.270 4.270 21 C 0.144 3.856 22 N -0.552 5.552 23 H 0.446 0.554 24 C 0.072 3.928 25 C -0.073 4.073 26 C -0.135 4.135 27 C 0.065 3.935 28 F -0.151 7.151 29 C -0.134 4.134 30 C -0.065 4.065 31 C 0.122 3.878 32 H 0.063 0.937 33 H 0.036 0.964 34 H 0.042 0.958 35 H 0.374 0.626 36 H 0.249 0.751 37 H 0.083 0.917 38 H 0.073 0.927 39 H 0.101 0.899 40 H 0.097 0.903 41 H 0.227 0.773 42 H 0.179 0.821 43 H 0.169 0.831 44 H 0.113 0.887 45 H 0.070 0.930 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.680 -0.779 25.860 28.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.074 3.926 3 H 0.066 0.934 4 N -0.369 5.369 5 C -0.360 4.360 6 H 0.090 0.910 7 C -0.266 4.266 8 N -0.618 5.618 9 Si 0.794 3.206 10 H -0.194 1.194 11 H -0.221 1.221 12 H -0.227 1.227 13 C -0.114 4.114 14 H 0.094 0.906 15 C -0.150 4.150 16 C -0.031 4.031 17 N -0.346 5.346 18 C 0.388 3.612 19 O -0.480 6.480 20 C -0.280 4.280 21 C 0.009 3.991 22 N -0.154 5.154 23 H 0.289 0.711 24 C -0.034 4.034 25 C -0.093 4.093 26 C -0.154 4.154 27 C 0.045 3.955 28 F -0.130 7.130 29 C -0.153 4.153 30 C -0.070 4.070 31 C -0.001 4.001 32 H 0.081 0.919 33 H 0.055 0.945 34 H 0.061 0.939 35 H 0.206 0.794 36 H 0.058 0.942 37 H 0.102 0.898 38 H 0.092 0.908 39 H 0.118 0.882 40 H 0.115 0.885 41 H 0.243 0.757 42 H 0.196 0.804 43 H 0.186 0.814 44 H 0.132 0.868 45 H 0.088 0.912 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 11.232 -0.457 26.112 28.429 hybrid contribution -0.540 0.092 -1.260 1.374 sum 10.692 -0.365 24.853 27.057 Atomic orbital electron populations 1.22379 0.98511 1.00773 1.00462 1.20284 0.92151 0.94983 0.85171 0.93431 1.42498 1.78217 1.10230 1.05932 1.19576 1.33969 0.94010 0.88435 0.90978 1.25400 1.03444 0.96819 1.00940 1.69793 1.52870 1.09961 1.29166 0.85214 0.76700 0.78198 0.80516 1.19389 1.22099 1.22737 1.22453 0.96712 0.99467 0.92720 0.90563 1.22523 0.94720 1.03654 0.94096 1.22646 0.86989 1.01538 0.91898 1.48348 1.16547 1.65442 1.04232 1.17254 0.86596 0.76940 0.80384 1.90740 1.29600 1.51604 1.76029 1.19830 0.96562 1.19952 0.91675 1.23388 0.89334 0.92510 0.93865 1.41587 1.15945 1.55090 1.02820 0.71119 1.18421 0.91077 1.04218 0.89682 1.20314 1.01253 1.00561 0.87122 1.21110 0.90603 1.01431 1.02276 1.17672 0.88450 1.04248 0.85089 1.91459 1.65248 1.91346 1.64961 1.20493 1.00283 1.03312 0.91236 1.18665 0.94117 1.02374 0.91829 1.22115 0.92320 0.99122 0.86583 0.91852 0.94517 0.93886 0.79369 0.94240 0.89841 0.90806 0.88151 0.88542 0.75717 0.80386 0.81369 0.86841 0.91223 0.91658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.62 9.23 71.98 0.66 -4.96 16 2 C 0.18 6.62 2.40 44.99 0.11 6.73 16 3 H 0.05 1.75 8.07 -2.39 -0.02 1.73 16 4 N -0.73 -33.76 4.88 -322.94 -1.58 -35.33 16 5 C -0.23 -11.94 9.93 84.03 0.83 -11.11 16 6 H 0.07 3.69 7.83 -2.91 -0.02 3.67 16 7 C -0.07 -4.06 5.50 84.86 0.47 -3.59 16 8 N -0.97 -56.53 13.06 21.65 0.28 -56.25 16 9 Si 0.96 44.81 29.55 68.60 2.03 46.84 16 10 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 11 H -0.29 -13.61 7.11 99.48 0.71 -12.91 16 12 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 13 C -0.09 -2.72 2.63 -9.40 -0.02 -2.75 16 14 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 15 C -0.11 -2.73 6.19 31.79 0.20 -2.53 16 16 C 0.09 1.58 5.00 86.73 0.43 2.01 16 17 N -0.61 -15.60 3.33 -816.27 -2.72 -18.32 16 18 C 0.60 17.86 7.83 86.51 0.68 18.54 16 19 O -0.60 -23.27 16.41 -4.26 -0.07 -23.34 16 20 C -0.27 -6.25 6.25 -19.02 -0.12 -6.36 16 21 C 0.14 1.76 10.37 83.70 0.87 2.63 16 22 N -0.55 -4.49 5.99 -187.04 -1.12 -5.61 16 23 H 0.45 -0.32 8.96 -92.71 -0.83 -1.15 16 24 C 0.07 1.06 7.26 38.89 0.28 1.34 16 25 C -0.07 -0.74 10.07 22.37 0.23 -0.52 16 26 C -0.13 -1.87 9.99 22.32 0.22 -1.65 16 27 C 0.07 1.45 7.29 22.37 0.16 1.62 16 28 F -0.15 -3.69 17.26 44.97 0.78 -2.92 16 29 C -0.13 -3.60 9.83 22.46 0.22 -3.38 16 30 C -0.07 -1.56 6.26 -20.08 -0.13 -1.68 16 31 C 0.12 3.42 5.52 86.85 0.48 3.90 16 32 H 0.06 1.88 7.60 -2.39 -0.02 1.86 16 33 H 0.04 1.39 8.14 -2.38 -0.02 1.37 16 34 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.37 18.61 7.80 -92.71 -0.72 17.88 16 36 H 0.25 14.21 8.31 -92.71 -0.77 13.44 16 37 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 38 H 0.07 1.93 8.04 -2.39 -0.02 1.91 16 39 H 0.10 1.17 7.02 -2.39 -0.02 1.15 16 40 H 0.10 1.20 6.85 -2.39 -0.02 1.19 16 41 H 0.23 1.19 4.29 -2.91 -0.01 1.18 16 42 H 0.18 0.24 8.06 -2.91 -0.02 0.22 16 43 H 0.17 1.31 8.06 -2.91 -0.02 1.29 16 44 H 0.11 3.65 7.45 -2.91 -0.02 3.63 16 45 H 0.07 1.95 8.03 -2.38 -0.02 1.93 16 46 H 0.06 2.00 8.04 -2.39 -0.02 1.98 16 Total: -1.00 -77.72 380.31 2.67 -75.05 By element: Atomic # 1 Polarization: 22.17 SS G_CDS: -0.51 Total: 21.65 kcal Atomic # 6 Polarization: -7.35 SS G_CDS: 5.57 Total: -1.77 kcal Atomic # 7 Polarization: -110.39 SS G_CDS: -5.13 Total: -115.51 kcal Atomic # 8 Polarization: -23.27 SS G_CDS: -0.07 Total: -23.34 kcal Atomic # 9 Polarization: -3.69 SS G_CDS: 0.78 Total: -2.92 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal Total: -77.72 2.67 -75.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279047238.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.433 kcal (2) G-P(sol) polarization free energy of solvation -77.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.89 seconds