Wall clock time and date at job start Wed Apr 1 2020 03:59:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47360 * 2 1 4 4 N 1.46504 * 109.47081 * 240.00245 * 2 1 3 5 5 C 1.36938 * 119.99920 * 85.00376 * 4 2 1 6 6 H 1.08002 * 120.00056 * 359.97438 * 5 4 2 7 7 C 1.38804 * 120.00148 * 180.02562 * 5 4 2 8 8 N 1.31628 * 119.99890 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 120.00441 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.46654 * 359.97438 * 9 7 5 11 11 H 1.48495 * 109.47394 * 119.99215 * 9 7 5 12 12 H 1.48502 * 109.47070 * 239.99838 * 9 7 5 13 13 C 1.53002 * 109.47381 * 120.00527 * 2 1 3 14 14 H 1.09002 * 109.50979 * 299.89663 * 13 2 1 15 15 C 1.53299 * 109.51477 * 179.74603 * 13 2 1 16 16 N 1.47149 * 108.38171 * 187.76973 * 15 13 2 17 17 C 1.34772 * 120.98173 * 230.55014 * 16 15 13 18 18 O 1.21544 * 120.00545 * 359.75884 * 17 16 15 19 19 C 1.47975 * 119.99859 * 179.75085 * 17 16 15 20 20 C 1.39735 * 119.42807 * 194.79992 * 19 17 16 21 21 C 1.36986 * 119.60061 * 179.72239 * 20 19 17 22 22 C 1.39894 * 118.35836 * 0.53916 * 21 20 19 23 23 N 1.35438 * 133.81395 * 179.72633 * 22 21 20 24 24 C 1.30215 * 109.57757 * 179.97438 * 23 22 21 25 25 N 1.35991 * 110.18075 * 0.02562 * 24 23 22 26 26 H 0.96995 * 126.29242 * 180.02562 * 25 24 23 27 27 C 1.37947 * 107.41605 * 359.97438 * 25 24 23 28 28 N 1.31871 * 133.82941 * 179.97438 * 27 25 24 29 29 C 1.47155 * 118.03484 * 50.53981 * 16 15 13 30 30 C 1.53294 * 108.38484 * 309.45745 * 29 16 15 31 31 O 1.42956 * 109.51203 * 59.99594 * 13 2 1 32 32 H 1.09001 * 109.46571 * 299.99545 * 1 2 3 33 33 H 1.09001 * 109.47360 * 179.97438 * 1 2 3 34 34 H 1.09003 * 109.47088 * 59.99521 * 1 2 3 35 35 H 0.96997 * 120.00234 * 264.99600 * 4 2 1 36 36 H 0.96996 * 120.00070 * 180.02562 * 8 7 5 37 37 H 1.08993 * 109.67895 * 307.49649 * 15 13 2 38 38 H 1.09003 * 109.67769 * 68.04954 * 15 13 2 39 39 H 1.07999 * 120.19837 * 359.97438 * 20 19 17 40 40 H 1.08001 * 120.82123 * 180.25818 * 21 20 19 41 41 H 1.08001 * 124.91031 * 179.97438 * 24 23 22 42 42 H 1.09003 * 109.67739 * 189.73609 * 29 16 15 43 43 H 1.08997 * 109.68292 * 69.18447 * 29 16 15 44 44 H 1.08995 * 109.51273 * 292.38127 * 30 29 16 45 45 H 1.09002 * 109.55449 * 172.25112 * 30 29 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1491 -0.0074 -2.3758 6 1 1.8920 1.0405 -2.4243 7 6 2.6113 -0.6617 -3.5093 8 7 2.9243 -1.9389 -3.4503 9 14 2.7891 0.2700 -5.1185 10 1 2.3743 1.6822 -4.9212 11 1 4.2059 0.2272 -5.5614 12 1 1.9280 -0.3586 -6.1522 13 6 2.0400 -0.7214 1.2492 14 1 1.6786 -0.2070 2.1396 15 6 3.5730 -0.7275 1.2469 16 7 4.0353 -1.5831 2.3513 17 6 4.9538 -1.1416 3.2332 18 8 5.4164 -0.0233 3.1205 19 6 5.3991 -2.0185 4.3388 20 6 6.1003 -1.4656 5.4137 21 6 6.5092 -2.2731 6.4419 22 6 6.2159 -3.6392 6.3710 23 7 6.4655 -4.6951 7.1817 24 6 5.9721 -5.7777 6.6524 25 7 5.3732 -5.4890 5.4661 26 1 4.9309 -6.1206 4.8776 27 6 5.5091 -4.1327 5.2542 28 7 5.1309 -3.3167 4.2898 29 6 3.4648 -2.9348 2.4644 30 6 1.9371 -2.8212 2.4073 31 8 1.5640 -2.0693 1.2500 32 1 -0.3632 0.5138 0.8901 33 1 -0.3634 -1.0277 -0.0005 34 1 -0.3633 0.5139 -0.8900 35 1 2.2491 -1.6317 -1.1527 36 1 3.2476 -2.3961 -4.2423 37 1 3.9371 -1.1230 0.2988 38 1 3.9443 0.2875 1.3887 39 1 6.3149 -0.4074 5.4356 40 1 7.0487 -1.8660 7.2843 41 1 6.0308 -6.7626 7.0916 42 1 3.7646 -3.3816 3.4123 43 1 3.8181 -3.5526 1.6388 44 1 1.5761 -2.3148 3.3024 45 1 1.4990 -3.8177 2.3510 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001282909391.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:59:27 Heat of formation + Delta-G solvation = 53.694200 kcal Electronic energy + Delta-G solvation = -30471.230053 eV Core-core repulsion = 26298.482763 eV Total energy + Delta-G solvation = -4172.747290 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.82851 -40.49097 -38.84977 -37.80797 -35.49357 -34.64609 -34.04004 -32.26964 -31.73028 -30.61327 -29.93975 -28.34658 -27.65989 -25.17210 -24.28948 -23.57196 -23.34290 -22.29376 -22.01497 -19.97555 -19.60629 -19.09649 -17.94455 -17.47305 -17.14858 -16.38649 -16.20995 -15.82215 -15.51600 -15.37626 -15.03339 -14.74228 -14.62551 -14.23787 -14.00483 -13.75134 -13.35165 -13.26073 -13.19909 -12.99349 -12.72222 -12.33987 -11.98553 -11.85396 -11.69456 -11.33363 -11.12912 -11.08795 -10.81766 -10.74733 -10.44065 -10.33499 -10.21936 -9.97204 -9.82666 -9.53694 -9.40709 -9.04742 -8.96054 -8.88951 -8.28851 -6.88669 -5.70525 -2.98770 0.03472 0.79863 1.99694 2.09428 2.73645 2.89850 3.47011 3.48430 3.52878 3.54798 3.59231 3.85561 4.06528 4.15438 4.43548 4.60522 4.63914 4.64708 5.00264 5.15129 5.22151 5.22481 5.35912 5.43210 5.48222 5.61774 5.62184 5.63148 5.77980 5.85159 5.89505 6.02376 6.05024 6.22943 6.26064 6.43067 6.44915 6.53841 6.65736 6.70875 6.81861 7.14672 7.17416 7.21384 7.43121 7.55952 7.76211 8.08331 8.47770 9.60076 10.17533 10.54829 11.51807 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.017799 B = 0.002561 C = 0.002555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.701703 B =10932.301925 C =10954.569506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.182 3.818 3 H 0.060 0.940 4 N -0.717 5.717 5 C -0.236 4.236 6 H 0.071 0.929 7 C -0.013 4.013 8 N -0.930 5.930 9 Si 0.904 3.096 10 H -0.281 1.281 11 H -0.293 1.293 12 H -0.293 1.293 13 C 0.080 3.920 14 H 0.054 0.946 15 C 0.082 3.918 16 N -0.585 5.585 17 C 0.568 3.432 18 O -0.531 6.531 19 C 0.129 3.871 20 C -0.124 4.124 21 C -0.023 4.023 22 C 0.021 3.979 23 N -0.491 5.491 24 C 0.287 3.713 25 N -0.587 5.587 26 H 0.433 0.567 27 C 0.229 3.771 28 N -0.442 5.442 29 C 0.034 3.966 30 C 0.047 3.953 31 O -0.361 6.361 32 H 0.032 0.968 33 H 0.055 0.945 34 H 0.053 0.947 35 H 0.390 0.610 36 H 0.253 0.747 37 H 0.100 0.900 38 H 0.097 0.903 39 H 0.159 0.841 40 H 0.151 0.849 41 H 0.228 0.772 42 H 0.150 0.850 43 H 0.076 0.924 44 H 0.044 0.956 45 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.912 -8.510 24.115 25.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.071 3.929 3 H 0.078 0.922 4 N -0.360 5.360 5 C -0.368 4.368 6 H 0.088 0.912 7 C -0.209 4.209 8 N -0.579 5.579 9 Si 0.736 3.264 10 H -0.206 1.206 11 H -0.220 1.220 12 H -0.220 1.220 13 C 0.020 3.980 14 H 0.072 0.928 15 C -0.039 4.039 16 N -0.316 5.316 17 C 0.354 3.646 18 O -0.407 6.407 19 C -0.018 4.018 20 C -0.147 4.147 21 C -0.050 4.050 22 C -0.100 4.100 23 N -0.211 5.211 24 C -0.001 4.001 25 N -0.202 5.202 26 H 0.273 0.727 27 C -0.008 4.008 28 N -0.158 5.158 29 C -0.088 4.088 30 C -0.031 4.031 31 O -0.279 6.279 32 H 0.051 0.949 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.225 0.775 36 H 0.063 0.937 37 H 0.118 0.882 38 H 0.115 0.885 39 H 0.177 0.823 40 H 0.168 0.832 41 H 0.244 0.756 42 H 0.165 0.835 43 H 0.094 0.906 44 H 0.062 0.938 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 4.074 -8.124 23.838 25.512 hybrid contribution 0.007 -0.175 -1.188 1.201 sum 4.081 -8.299 22.650 24.465 Atomic orbital electron populations 1.22345 0.98544 1.01534 0.99592 1.20264 0.92740 0.94651 0.85202 0.92200 1.42401 1.77628 1.11034 1.04908 1.19293 1.36254 0.93828 0.87390 0.91151 1.24720 1.02345 0.95932 0.97940 1.69690 1.50966 1.08606 1.28602 0.86156 0.77218 0.78816 0.84237 1.20591 1.21994 1.22022 1.22892 0.92023 0.83560 0.99508 0.92813 1.22548 0.95158 0.96516 0.89691 1.48066 1.39819 1.16156 1.27601 1.17715 0.80051 0.85721 0.81097 1.90811 1.56603 1.19366 1.73919 1.21079 0.97076 0.88139 0.95530 1.21569 0.97940 1.02503 0.92685 1.20497 0.96735 0.89152 0.98642 1.19873 1.01778 0.94925 0.93403 1.70464 1.23815 0.97278 1.29555 1.25596 0.91686 1.00158 0.82703 1.42903 1.49502 1.06242 1.21522 0.72696 1.19149 1.00895 0.86037 0.94723 1.66414 1.20027 1.03642 1.25763 1.23754 0.93898 0.83496 1.07683 1.22961 0.94013 0.97082 0.89082 1.88087 1.75254 1.23617 1.40952 0.94877 0.92579 0.92767 0.77512 0.93708 0.88164 0.88454 0.82315 0.83159 0.75621 0.83474 0.90576 0.93817 0.88379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.02 9.35 37.16 0.35 -2.67 16 2 C 0.18 3.68 2.74 -67.93 -0.19 3.50 16 3 H 0.06 1.20 8.08 -51.93 -0.42 0.78 16 4 N -0.72 -17.94 4.29 -53.42 -0.23 -18.17 16 5 C -0.24 -6.54 9.93 -15.06 -0.15 -6.68 16 6 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 7 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 8 N -0.93 -28.24 13.06 55.49 0.72 -27.52 16 9 Si 0.90 22.63 29.55 -169.99 -5.02 17.61 16 10 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 12 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 13 C 0.08 1.40 2.53 -26.58 -0.07 1.34 16 14 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 15 C 0.08 1.50 5.86 -3.53 -0.02 1.48 16 16 N -0.59 -9.33 3.02 -173.34 -0.52 -9.85 16 17 C 0.57 8.96 7.66 -12.27 -0.09 8.87 16 18 O -0.53 -9.62 15.86 5.33 0.08 -9.54 16 19 C 0.13 1.66 6.58 -82.96 -0.55 1.11 16 20 C -0.12 -1.30 9.54 -39.48 -0.38 -1.68 16 21 C -0.02 -0.21 10.16 -39.42 -0.40 -0.61 16 22 C 0.02 0.22 7.25 -84.57 -0.61 -0.39 16 23 N -0.49 -4.45 11.27 -11.93 -0.13 -4.59 16 24 C 0.29 1.45 12.96 -89.74 -1.16 0.29 16 25 N -0.59 -3.45 6.22 -13.21 -0.08 -3.53 16 26 H 0.43 1.26 8.96 -40.82 -0.37 0.90 16 27 C 0.23 2.29 8.46 -155.74 -1.32 0.97 16 28 N -0.44 -5.17 6.13 -8.82 -0.05 -5.22 16 29 C 0.03 0.47 6.18 -3.53 -0.02 0.45 16 30 C 0.05 0.63 6.99 37.31 0.26 0.89 16 31 O -0.36 -6.42 9.22 -35.23 -0.32 -6.74 16 32 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.06 1.11 7.68 -51.93 -0.40 0.71 16 34 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.39 10.57 7.20 -40.82 -0.29 10.28 16 36 H 0.25 7.45 8.31 -40.82 -0.34 7.12 16 37 H 0.10 2.14 7.26 -51.93 -0.38 1.76 16 38 H 0.10 1.80 7.08 -51.93 -0.37 1.43 16 39 H 0.16 1.51 7.68 -52.49 -0.40 1.10 16 40 H 0.15 1.00 8.06 -52.49 -0.42 0.58 16 41 H 0.23 -0.05 8.06 -52.49 -0.42 -0.48 16 42 H 0.15 1.78 3.92 -87.98 -0.34 1.43 16 43 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 44 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.10 1.12 8.14 -51.93 -0.42 0.69 16 LS Contribution 370.59 15.07 5.58 5.58 Total: -1.00 -35.86 370.59 -10.32 -46.18 By element: Atomic # 1 Polarization: 15.32 SS G_CDS: -5.90 Total: 9.42 kcal Atomic # 6 Polarization: 10.81 SS G_CDS: -4.44 Total: 6.36 kcal Atomic # 7 Polarization: -68.59 SS G_CDS: -0.30 Total: -68.88 kcal Atomic # 8 Polarization: -16.04 SS G_CDS: -0.24 Total: -16.28 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -5.02 Total: 17.61 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -35.86 -10.32 -46.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282909391.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.877 kcal (2) G-P(sol) polarization free energy of solvation -35.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.183 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds