Wall clock time and date at job start Wed Apr 1 2020 03:59:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46955 * 2 1 4 4 N 1.46501 * 109.47124 * 119.99237 * 2 1 3 5 5 C 1.36929 * 120.00417 * 275.00857 * 4 2 1 6 6 H 1.07998 * 120.00097 * 359.97438 * 5 4 2 7 7 C 1.38815 * 120.00111 * 180.27702 * 5 4 2 8 8 N 1.31622 * 119.99919 * 359.71706 * 7 5 4 9 9 Si 1.86797 * 120.00296 * 179.72439 * 7 5 4 10 10 H 1.48501 * 109.47137 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47484 * 119.99623 * 9 7 5 12 12 H 1.48497 * 109.46982 * 239.99635 * 9 7 5 13 13 C 1.53000 * 109.47558 * 239.99978 * 2 1 3 14 14 H 1.08992 * 109.51217 * 64.89804 * 13 2 1 15 15 C 1.53300 * 109.51252 * 184.99968 * 13 2 1 16 16 N 1.47151 * 108.38240 * 172.22274 * 15 13 2 17 17 C 1.34778 * 120.97862 * 129.44106 * 16 15 13 18 18 O 1.21545 * 120.00308 * 352.65224 * 17 16 15 19 19 C 1.47971 * 119.99818 * 172.64726 * 17 16 15 20 20 C 1.39732 * 119.43091 * 171.29905 * 19 17 16 21 21 C 1.36978 * 119.60455 * 179.97438 * 20 19 17 22 22 C 1.39897 * 118.35776 * 359.97438 * 21 20 19 23 23 N 1.35440 * 133.80718 * 179.97438 * 22 21 20 24 24 C 1.30221 * 109.57141 * 180.02562 * 23 22 21 25 25 N 1.35998 * 110.18240 * 359.97438 * 24 23 22 26 26 H 0.96997 * 126.28942 * 180.02562 * 25 24 23 27 27 C 1.37940 * 107.40838 * 0.02562 * 25 24 23 28 28 N 1.31894 * 133.82373 * 180.27975 * 27 25 24 29 29 C 1.47144 * 118.03880 * 309.46634 * 16 15 13 30 30 C 1.53292 * 108.38636 * 50.53273 * 29 16 15 31 31 O 1.42959 * 109.22281 * 307.70134 * 30 29 16 32 32 H 1.09005 * 109.46797 * 60.00358 * 1 2 3 33 33 H 1.09002 * 109.46955 * 180.02562 * 1 2 3 34 34 H 1.08993 * 109.47631 * 300.00087 * 1 2 3 35 35 H 0.97010 * 119.99263 * 95.00220 * 4 2 1 36 36 H 0.96991 * 120.00228 * 180.02562 * 8 7 5 37 37 H 1.08996 * 109.68166 * 291.94687 * 15 13 2 38 38 H 1.08995 * 109.68140 * 52.46310 * 15 13 2 39 39 H 1.08005 * 120.19820 * 359.96045 * 20 19 17 40 40 H 1.08002 * 120.82423 * 179.97438 * 21 20 19 41 41 H 1.08001 * 124.90648 * 180.02562 * 24 23 22 42 42 H 1.08992 * 109.68484 * 170.25800 * 29 16 15 43 43 H 1.08997 * 109.68196 * 290.81161 * 29 16 15 44 44 H 1.09004 * 109.51192 * 67.62245 * 30 29 16 45 45 H 1.08999 * 109.51889 * 187.77709 * 30 29 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 2.1490 -0.0073 2.3758 6 1 1.8924 1.0406 2.4242 7 6 2.6171 -0.6602 3.5078 8 7 2.9302 -1.9373 3.4488 9 14 2.8027 0.2735 5.1150 10 1 2.3875 1.6856 4.9178 11 1 1.9470 -0.3540 6.1538 12 1 4.2216 0.2315 5.5509 13 6 2.0401 -0.7212 -1.2492 14 1 1.7506 -0.1598 -2.1374 15 6 3.5679 -0.8317 -1.1887 16 7 4.0156 -1.6875 -2.2988 17 6 4.9961 -1.2865 -3.1321 18 8 5.4321 -0.1544 -3.0573 19 6 5.5420 -2.2246 -4.1378 20 6 6.4233 -1.7497 -5.1126 21 6 6.9312 -2.6151 -6.0451 22 6 6.5443 -3.9581 -5.9855 23 7 6.8424 -5.0534 -6.7244 24 6 6.2087 -6.0865 -6.2482 25 7 5.4618 -5.7234 -5.1712 26 1 4.8993 -6.3078 -4.6393 27 6 5.6514 -4.3714 -4.9744 28 7 5.1918 -3.5033 -4.0942 29 6 3.3609 -2.9938 -2.4727 30 6 1.8432 -2.7780 -2.4706 31 8 1.4753 -2.0332 -1.3071 32 1 -0.3633 0.5138 -0.8901 33 1 -0.3633 -1.0277 0.0005 34 1 -0.3634 0.5138 0.8899 35 1 2.2490 -1.6317 1.1527 36 1 3.2570 -2.3936 4.2398 37 1 4.0118 0.1589 -1.2868 38 1 3.8665 -1.2753 -0.2389 39 1 6.7023 -0.7064 -5.1309 40 1 7.6135 -2.2691 -6.8075 41 1 6.2684 -7.0873 -6.6499 42 1 3.6676 -3.4348 -3.4210 43 1 3.6387 -3.6557 -1.6525 44 1 1.5529 -2.2248 -3.3639 45 1 1.3381 -3.7438 -2.4594 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001282909397.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:59:41 Heat of formation + Delta-G solvation = 28.910527 kcal Electronic energy + Delta-G solvation = -30479.502494 eV Core-core repulsion = 26305.680504 eV Total energy + Delta-G solvation = -4173.821990 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -43.47356 -41.64221 -39.99876 -38.85247 -37.12649 -35.93634 -34.80770 -34.15930 -32.45368 -31.78689 -31.10797 -30.11281 -28.89618 -26.23016 -25.65622 -25.12621 -24.31174 -23.46338 -22.65662 -21.34656 -20.90375 -19.77037 -19.38526 -18.77655 -18.22093 -17.63560 -17.19646 -17.02909 -16.73744 -16.29324 -16.23172 -16.09800 -15.71922 -15.65787 -15.17577 -15.04274 -14.75481 -14.55297 -14.38306 -14.03295 -13.92977 -13.68259 -13.45563 -13.12686 -12.95390 -12.79384 -12.53709 -12.48877 -12.34316 -12.12514 -12.06072 -11.78971 -11.68815 -11.60029 -11.31882 -11.09810 -10.95250 -10.15761 -9.95804 -9.79021 -9.52822 -8.95137 -7.89788 -5.17084 -0.75095 0.05080 1.30792 1.40490 1.47796 1.48327 1.58056 1.74794 1.88470 2.58022 2.64953 2.79454 2.91878 3.17019 3.38998 3.44480 3.61945 3.74639 3.90307 3.94938 3.98499 4.04392 4.17228 4.21403 4.29652 4.46758 4.47733 4.56800 4.60558 4.68512 4.78531 4.85724 4.90252 4.96837 4.97901 5.05058 5.10561 5.21924 5.27816 5.48824 5.54935 5.62194 5.99038 6.21318 6.26279 6.32386 6.49750 6.64061 6.87959 7.38681 8.14019 8.39415 9.33760 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.016774 B = 0.002606 C = 0.002579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.854412 B =10741.101490 C =10853.773429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.173 3.827 3 H 0.062 0.938 4 N -0.727 5.727 5 C -0.232 4.232 6 H 0.077 0.923 7 C -0.077 4.077 8 N -0.968 5.968 9 Si 0.968 3.032 10 H -0.266 1.266 11 H -0.296 1.296 12 H -0.298 1.298 13 C 0.093 3.907 14 H 0.077 0.923 15 C 0.092 3.908 16 N -0.591 5.591 17 C 0.567 3.433 18 O -0.563 6.563 19 C 0.099 3.901 20 C -0.121 4.121 21 C -0.024 4.024 22 C 0.017 3.983 23 N -0.530 5.530 24 C 0.319 3.681 25 N -0.576 5.576 26 H 0.447 0.553 27 C 0.212 3.788 28 N -0.449 5.449 29 C 0.051 3.949 30 C 0.043 3.957 31 O -0.384 6.384 32 H 0.067 0.933 33 H 0.045 0.955 34 H 0.039 0.961 35 H 0.376 0.624 36 H 0.248 0.752 37 H 0.086 0.914 38 H 0.062 0.938 39 H 0.163 0.837 40 H 0.175 0.825 41 H 0.283 0.717 42 H 0.161 0.839 43 H 0.060 0.940 44 H 0.060 0.940 45 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.913 -10.356 -25.859 28.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.064 3.936 3 H 0.080 0.920 4 N -0.368 5.368 5 C -0.364 4.364 6 H 0.095 0.905 7 C -0.269 4.269 8 N -0.620 5.620 9 Si 0.798 3.202 10 H -0.190 1.190 11 H -0.223 1.223 12 H -0.225 1.225 13 C 0.034 3.966 14 H 0.095 0.905 15 C -0.030 4.030 16 N -0.322 5.322 17 C 0.355 3.645 18 O -0.442 6.442 19 C -0.047 4.047 20 C -0.145 4.145 21 C -0.051 4.051 22 C -0.104 4.104 23 N -0.250 5.250 24 C 0.032 3.968 25 N -0.192 5.192 26 H 0.291 0.709 27 C -0.027 4.027 28 N -0.165 5.165 29 C -0.071 4.071 30 C -0.034 4.034 31 O -0.303 6.303 32 H 0.085 0.915 33 H 0.064 0.936 34 H 0.058 0.942 35 H 0.209 0.791 36 H 0.057 0.943 37 H 0.104 0.896 38 H 0.080 0.920 39 H 0.180 0.820 40 H 0.192 0.808 41 H 0.298 0.702 42 H 0.177 0.823 43 H 0.078 0.922 44 H 0.079 0.921 45 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 4.003 -9.952 -25.618 27.773 hybrid contribution 0.123 0.073 1.718 1.724 sum 4.126 -9.879 -23.900 26.188 Atomic orbital electron populations 1.22139 0.96867 1.01116 1.00528 1.20513 0.93808 0.94643 0.84604 0.92017 1.42539 1.77972 1.10437 1.05818 1.19665 1.34189 0.94175 0.88329 0.90526 1.25488 1.03307 0.96858 1.01253 1.69840 1.52795 1.10197 1.29121 0.85139 0.76541 0.78306 0.80207 1.19004 1.22296 1.22510 1.22619 0.90490 0.84801 0.98736 0.90545 1.22181 0.96030 0.96106 0.88731 1.48106 1.35669 1.19850 1.28623 1.18182 0.79448 0.86205 0.80662 1.90765 1.61410 1.20220 1.71761 1.20606 0.98553 0.88763 0.96735 1.21601 0.96408 1.02747 0.93694 1.20730 0.97628 0.88654 0.98099 1.20212 0.99095 0.95655 0.95474 1.70527 1.27107 0.98017 1.29351 1.26778 0.85671 1.01313 0.83019 1.43020 1.41957 1.05221 1.29015 0.70907 1.19350 0.99543 0.87678 0.96129 1.66249 1.24008 1.01860 1.24406 1.23651 0.92865 0.83354 1.07267 1.23253 0.94076 0.97961 0.88112 1.88045 1.71175 1.27080 1.43957 0.91451 0.93627 0.94190 0.79133 0.94337 0.89552 0.91953 0.81974 0.80781 0.70229 0.82287 0.92175 0.92141 0.85705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.40 9.30 71.98 0.67 -4.73 16 2 C 0.17 7.04 2.80 44.99 0.13 7.16 16 3 H 0.06 2.48 8.08 -2.39 -0.02 2.46 16 4 N -0.73 -37.22 4.24 -322.94 -1.37 -38.59 16 5 C -0.23 -12.99 9.93 84.04 0.83 -12.15 16 6 H 0.08 4.12 7.83 -2.91 -0.02 4.10 16 7 C -0.08 -4.51 5.50 84.86 0.47 -4.04 16 8 N -0.97 -60.52 13.06 21.65 0.28 -60.23 16 9 Si 0.97 47.34 29.55 68.60 2.03 49.37 16 10 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 11 H -0.30 -14.46 7.11 99.48 0.71 -13.75 16 12 H -0.30 -14.66 7.11 99.48 0.71 -13.95 16 13 C 0.09 3.28 2.57 30.69 0.08 3.36 16 14 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 15 C 0.09 3.53 5.84 86.36 0.50 4.03 16 16 N -0.59 -19.48 3.02 -820.65 -2.48 -21.96 16 17 C 0.57 18.61 7.66 86.82 0.67 19.28 16 18 O -0.56 -21.39 15.80 -3.86 -0.06 -21.45 16 19 C 0.10 2.60 6.58 41.96 0.28 2.87 16 20 C -0.12 -2.58 9.54 22.34 0.21 -2.37 16 21 C -0.02 -0.43 10.16 22.38 0.23 -0.20 16 22 C 0.02 0.33 7.25 39.68 0.29 0.61 16 23 N -0.53 -8.18 11.27 -191.65 -2.16 -10.34 16 24 C 0.32 1.99 12.96 180.04 2.33 4.32 16 25 N -0.58 -5.10 6.22 -195.69 -1.22 -6.31 16 26 H 0.45 1.22 8.96 -92.71 -0.83 0.39 16 27 C 0.21 3.93 8.46 134.05 1.13 5.06 16 28 N -0.45 -10.34 6.14 -181.84 -1.12 -11.45 16 29 C 0.05 1.37 6.01 86.35 0.52 1.89 16 30 C 0.04 1.10 6.98 72.08 0.50 1.60 16 31 O -0.38 -13.36 9.24 -148.98 -1.38 -14.74 16 32 H 0.07 2.00 8.14 -2.38 -0.02 1.98 16 33 H 0.04 1.77 7.57 -2.39 -0.02 1.75 16 34 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.38 21.12 7.08 -92.70 -0.66 20.46 16 36 H 0.25 15.06 8.31 -92.71 -0.77 14.28 16 37 H 0.09 3.43 7.06 -2.39 -0.02 3.42 16 38 H 0.06 2.86 6.94 -2.39 -0.02 2.85 16 39 H 0.16 3.22 7.64 -2.91 -0.02 3.20 16 40 H 0.17 2.08 8.06 -2.91 -0.02 2.06 16 41 H 0.28 -1.76 8.06 -2.91 -0.02 -1.79 16 42 H 0.16 3.70 4.21 -54.55 -0.23 3.47 16 43 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 44 H 0.06 1.38 8.14 -2.38 -0.02 1.36 16 45 H 0.13 2.51 8.14 -2.39 -0.02 2.49 16 Total: -1.00 -80.74 370.06 0.72 -80.02 By element: Atomic # 1 Polarization: 29.64 SS G_CDS: -0.65 Total: 28.99 kcal Atomic # 6 Polarization: 17.86 SS G_CDS: 8.84 Total: 26.70 kcal Atomic # 7 Polarization: -140.83 SS G_CDS: -8.06 Total: -148.89 kcal Atomic # 8 Polarization: -34.75 SS G_CDS: -1.44 Total: -36.19 kcal Atomic # 14 Polarization: 47.34 SS G_CDS: 2.03 Total: 49.37 kcal Total: -80.74 0.72 -80.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282909397.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.926 kcal (2) G-P(sol) polarization free energy of solvation -80.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.015 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds