Wall clock time and date at job start Wed Apr 1 2020 03:18:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08994 * 109.47203 * 2 1 4 4 C 1.52995 * 109.47295 * 239.99633 * 2 1 3 5 5 C 1.53004 * 109.47243 * 175.00198 * 4 2 1 6 6 C 1.52995 * 109.47243 * 180.02562 * 5 4 2 7 7 N 1.46504 * 109.47076 * 179.97438 * 6 5 4 8 8 C 1.36938 * 119.99943 * 180.02562 * 7 6 5 9 9 H 1.08001 * 119.99664 * 0.02562 * 8 7 6 10 10 C 1.38814 * 119.99650 * 180.02562 * 8 7 6 11 11 N 1.31614 * 120.00361 * 359.97438 * 10 8 7 12 12 Si 1.86803 * 119.99393 * 179.97438 * 10 8 7 13 13 H 1.48498 * 109.47243 * 90.00095 * 12 10 8 14 14 H 1.48505 * 109.46756 * 209.99938 * 12 10 8 15 15 H 1.48499 * 109.47672 * 329.99736 * 12 10 8 16 16 N 1.46505 * 109.46864 * 119.99805 * 2 1 3 17 17 C 1.34777 * 119.99724 * 275.00347 * 16 2 1 18 18 O 1.21563 * 120.00284 * 359.97438 * 17 16 2 19 19 C 1.47768 * 119.99642 * 179.72314 * 17 16 2 20 20 C 1.40608 * 120.26852 * 0.27631 * 19 17 16 21 21 N 1.30796 * 121.52918 * 179.97438 * 20 19 17 22 22 C 1.33789 * 121.72416 * 0.02562 * 21 20 19 23 23 C 1.40755 * 120.82805 * 180.02562 * 22 21 20 24 24 F 1.35096 * 120.11307 * 359.95717 * 23 22 21 25 25 C 1.36329 * 119.76561 * 179.97438 * 23 22 21 26 26 C 1.39303 * 121.06205 * 359.97438 * 25 23 22 27 27 C 1.36143 * 120.86744 * 359.97438 * 26 25 23 28 28 C 1.40551 * 119.66772 * 0.02562 * 27 26 25 29 29 C 1.38993 * 120.26900 * 179.97438 * 19 17 16 30 30 H 1.09002 * 109.46916 * 179.97438 * 1 2 3 31 31 H 1.08991 * 109.47246 * 300.00597 * 1 2 3 32 32 H 1.08998 * 109.46377 * 60.00600 * 1 2 3 33 33 H 1.09003 * 109.47445 * 295.00334 * 4 2 1 34 34 H 1.09002 * 109.47282 * 55.00376 * 4 2 1 35 35 H 1.09003 * 109.47011 * 300.00402 * 5 4 2 36 36 H 1.09002 * 109.46836 * 59.99905 * 5 4 2 37 37 H 1.09003 * 109.47445 * 300.00136 * 6 5 4 38 38 H 1.09002 * 109.47282 * 60.00178 * 6 5 4 39 39 H 0.96997 * 119.99949 * 0.02562 * 7 6 5 40 40 H 0.96999 * 119.99900 * 179.97438 * 11 10 8 41 41 H 0.97000 * 119.99792 * 94.99915 * 16 2 1 42 42 H 1.07995 * 119.23569 * 359.97438 * 20 19 17 43 43 H 1.08004 * 119.47017 * 179.97438 * 25 23 22 44 44 H 1.08004 * 119.56745 * 179.97438 * 26 25 23 45 45 H 1.07999 * 120.16870 * 180.02562 * 27 26 25 46 46 H 1.08001 * 121.02071 * 0.02562 * 29 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 3.5650 -0.6134 -1.3136 6 6 4.0749 -1.3341 -2.5630 7 7 5.5350 -1.2302 -2.6250 8 6 6.2187 -1.8035 -3.6638 9 1 5.6816 -2.3319 -4.4375 10 6 7.6022 -1.7055 -3.7221 11 7 8.2567 -1.0612 -2.7794 12 14 8.5349 -2.4882 -5.1388 13 1 8.6670 -1.5078 -6.2463 14 1 9.8854 -2.8974 -4.6762 15 1 7.7938 -3.6817 -5.6202 16 7 2.0184 -0.6906 1.1963 17 6 2.1470 -0.0182 2.3572 18 8 1.8583 1.1614 2.4116 19 6 2.6337 -0.7162 3.5653 20 6 2.9697 -2.0804 3.5085 21 7 3.4033 -2.7224 4.5624 22 6 3.5484 -2.1152 5.7457 23 6 4.0171 -2.8243 6.8676 24 9 4.3267 -4.1349 6.7602 25 6 4.1573 -2.1839 8.0629 26 6 3.8440 -0.8331 8.1957 27 6 3.3889 -0.1139 7.1331 28 6 3.2318 -0.7406 5.8849 29 6 2.7689 -0.0282 4.7653 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8898 32 1 -0.3632 0.5138 -0.8901 33 1 1.7517 -1.7716 -1.2055 34 1 1.6056 -0.2618 -2.1369 35 1 3.8534 0.4369 -1.3572 36 1 3.9995 -1.0729 -0.4258 37 1 3.7866 -2.3844 -2.5199 38 1 3.6404 -0.8742 -3.4506 39 1 6.0173 -0.7554 -1.9302 40 1 9.2234 -0.9931 -2.8201 41 1 2.2490 -1.6318 1.1527 42 1 2.8674 -2.6104 2.5731 43 1 4.5170 -2.7327 8.9208 44 1 3.9638 -0.3499 9.1542 45 1 3.1499 0.9330 7.2487 46 1 2.5223 1.0209 4.8363 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001283204811.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:18:45 Heat of formation + Delta-G solvation = -26.934884 kcal Electronic energy + Delta-G solvation = -28581.899030 eV Core-core repulsion = 24385.735440 eV Total energy + Delta-G solvation = -4196.163591 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -49.19723 -41.35858 -39.86674 -37.46485 -36.82838 -34.89317 -33.68359 -32.81808 -31.73220 -30.61146 -30.19604 -29.36416 -25.82807 -25.28541 -24.63180 -23.07062 -22.51658 -21.77349 -20.87322 -20.78071 -19.03289 -18.47726 -17.77660 -17.12301 -16.99961 -16.34610 -16.14659 -15.91048 -15.29083 -15.14451 -14.79382 -14.63172 -14.44675 -14.26255 -14.09897 -13.78693 -13.58088 -13.51309 -13.47474 -13.00573 -12.75715 -12.69753 -12.25104 -12.18825 -12.12722 -11.91131 -11.34118 -11.21140 -10.85610 -10.83289 -10.79591 -10.58547 -10.44949 -10.39960 -10.00891 -9.85549 -9.68430 -9.45433 -9.21643 -8.85577 -8.62547 -6.90403 -5.74749 -3.03535 -0.30701 0.06019 1.27327 2.09143 2.84103 2.87171 3.44685 3.46347 3.49411 3.51465 3.56256 3.74157 4.14103 4.21012 4.28151 4.29963 4.49703 4.58010 4.59834 4.72954 4.85689 4.98535 5.04963 5.10633 5.26177 5.38417 5.38782 5.50931 5.54446 5.56567 5.58588 5.58944 5.74119 5.78767 5.89520 5.92388 6.02576 6.07120 6.17956 6.23961 6.34156 6.36495 6.40275 6.85893 6.89324 7.24798 7.31737 7.71089 7.94204 8.44268 9.55055 10.13989 10.48085 11.48233 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.009400 B = 0.002324 C = 0.001985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2977.962924 B =12043.149314 C =14100.110955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.141 3.859 3 H 0.092 0.908 4 C -0.124 4.124 5 C -0.127 4.127 6 C 0.153 3.847 7 N -0.735 5.735 8 C -0.240 4.240 9 H 0.070 0.930 10 C -0.015 4.015 11 N -0.934 5.934 12 Si 0.907 3.093 13 H -0.290 1.290 14 H -0.291 1.291 15 H -0.282 1.282 16 N -0.713 5.713 17 C 0.566 3.434 18 O -0.534 6.534 19 C -0.182 4.182 20 C 0.165 3.835 21 N -0.464 5.464 22 C 0.111 3.889 23 C 0.124 3.876 24 F -0.120 7.120 25 C -0.132 4.132 26 C -0.095 4.095 27 C -0.095 4.095 28 C -0.090 4.090 29 C 0.011 3.989 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.081 0.919 35 H 0.062 0.938 36 H 0.060 0.940 37 H 0.017 0.983 38 H 0.017 0.983 39 H 0.383 0.617 40 H 0.255 0.745 41 H 0.401 0.599 42 H 0.167 0.833 43 H 0.145 0.855 44 H 0.141 0.859 45 H 0.142 0.858 46 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.706 1.299 23.010 28.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.037 3.963 3 H 0.110 0.890 4 C -0.162 4.162 5 C -0.164 4.164 6 C 0.025 3.975 7 N -0.379 5.379 8 C -0.371 4.371 9 H 0.088 0.912 10 C -0.211 4.211 11 N -0.582 5.582 12 Si 0.738 3.262 13 H -0.217 1.217 14 H -0.218 1.218 15 H -0.208 1.208 16 N -0.364 5.364 17 C 0.352 3.648 18 O -0.412 6.412 19 C -0.187 4.187 20 C -0.009 4.009 21 N -0.170 5.170 22 C -0.011 4.011 23 C 0.104 3.896 24 F -0.098 7.098 25 C -0.153 4.153 26 C -0.113 4.113 27 C -0.113 4.113 28 C -0.092 4.092 29 C -0.015 4.015 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.100 0.900 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.035 0.965 38 H 0.035 0.965 39 H 0.217 0.783 40 H 0.065 0.935 41 H 0.237 0.763 42 H 0.184 0.816 43 H 0.163 0.837 44 H 0.159 0.841 45 H 0.159 0.841 46 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -16.621 1.080 22.900 28.316 hybrid contribution 0.821 -0.189 -0.619 1.045 sum -15.800 0.892 22.280 27.329 Atomic orbital electron populations 1.22177 0.95190 1.02161 1.02552 1.21122 0.93750 0.97889 0.83502 0.89006 1.21870 0.96951 1.00864 0.96532 1.21746 0.93568 1.01542 0.99591 1.20647 0.86218 0.96458 0.94164 1.42381 1.00201 1.66305 1.28982 1.19239 0.89445 1.27184 1.01222 0.91205 1.24757 0.96470 1.01253 0.98644 1.69661 1.07199 1.47044 1.34343 0.86185 0.79394 0.78819 0.81771 1.21720 1.21757 1.20758 1.46031 1.66652 1.14188 1.09561 1.17884 0.77702 0.86404 0.82805 1.90787 1.50247 1.15201 1.84937 1.21072 1.06015 0.95978 0.95632 1.23116 0.90526 0.90258 0.96977 1.67933 1.12916 1.37927 0.98252 1.18949 0.99056 0.90921 0.92210 1.17154 1.00647 0.78908 0.92928 1.91552 1.90007 1.31632 1.96619 1.20992 1.01723 0.95988 0.96585 1.20744 0.97971 0.92917 0.99657 1.21123 0.98605 1.00628 0.90992 1.18630 1.01756 0.93333 0.95480 1.21961 0.89427 1.00518 0.89610 0.92400 0.92276 0.91341 0.91274 0.90039 0.91883 0.92084 0.96534 0.96485 0.78347 0.93520 0.76333 0.81605 0.83726 0.84148 0.84053 0.82290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.47 9.48 37.16 0.35 -1.12 16 2 C 0.14 1.49 2.58 -67.93 -0.17 1.32 16 3 H 0.09 1.15 7.58 -51.93 -0.39 0.75 16 4 C -0.12 -1.37 4.75 -26.73 -0.13 -1.50 16 5 C -0.13 -1.94 5.22 -26.73 -0.14 -2.08 16 6 C 0.15 3.03 6.26 -4.04 -0.03 3.00 16 7 N -0.73 -18.99 5.60 -59.91 -0.34 -19.33 16 8 C -0.24 -6.84 9.99 -15.06 -0.15 -6.99 16 9 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 10 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 11 N -0.93 -28.81 13.06 55.49 0.72 -28.08 16 12 Si 0.91 22.72 29.55 -169.99 -5.02 17.70 16 13 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 14 H -0.29 -7.34 7.11 56.52 0.40 -6.93 16 15 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 16 N -0.71 -7.28 4.48 -54.77 -0.25 -7.52 16 17 C 0.57 6.71 7.74 -12.36 -0.10 6.62 16 18 O -0.53 -7.86 16.04 5.31 0.09 -7.78 16 19 C -0.18 -1.93 5.89 -104.83 -0.62 -2.55 16 20 C 0.17 1.74 10.68 -17.10 -0.18 1.56 16 21 N -0.46 -5.79 10.17 -10.63 -0.11 -5.89 16 22 C 0.11 1.27 6.61 -84.72 -0.56 0.71 16 23 C 0.12 1.29 7.30 -39.32 -0.29 1.00 16 24 F -0.12 -1.43 17.11 2.25 0.04 -1.39 16 25 C -0.13 -0.93 9.91 -39.87 -0.40 -1.33 16 26 C -0.09 -0.53 9.95 -39.94 -0.40 -0.92 16 27 C -0.09 -0.62 9.77 -39.46 -0.39 -1.00 16 28 C -0.09 -0.85 5.74 -106.82 -0.61 -1.46 16 29 C 0.01 0.11 9.46 -38.43 -0.36 -0.25 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.06 0.94 7.75 -51.93 -0.40 0.54 16 37 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.38 10.45 7.67 -40.82 -0.31 10.14 16 40 H 0.25 7.59 8.31 -40.82 -0.34 7.25 16 41 H 0.40 3.33 6.63 -40.82 -0.27 3.06 16 42 H 0.17 1.32 6.37 -52.49 -0.33 0.98 16 43 H 0.14 0.67 8.06 -52.48 -0.42 0.25 16 44 H 0.14 0.35 8.06 -52.48 -0.42 -0.07 16 45 H 0.14 0.55 8.06 -52.49 -0.42 0.13 16 46 H 0.16 1.31 7.70 -52.49 -0.40 0.90 16 LS Contribution 393.33 15.07 5.93 5.93 Total: -1.00 -35.66 393.33 -9.51 -45.17 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: -6.31 Total: 6.75 kcal Atomic # 6 Polarization: -1.29 SS G_CDS: -4.26 Total: -5.55 kcal Atomic # 7 Polarization: -60.86 SS G_CDS: 0.04 Total: -60.83 kcal Atomic # 8 Polarization: -7.86 SS G_CDS: 0.09 Total: -7.78 kcal Atomic # 9 Polarization: -1.43 SS G_CDS: 0.04 Total: -1.39 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -5.02 Total: 17.70 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -35.66 -9.51 -45.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283204811.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.232 kcal (2) G-P(sol) polarization free energy of solvation -35.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds