Wall clock time and date at job start Wed Apr 1 2020 03:18:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08994 * 109.47203 * 2 1 4 4 C 1.52995 * 109.47295 * 239.99633 * 2 1 3 5 5 C 1.53004 * 109.47243 * 175.00198 * 4 2 1 6 6 C 1.52995 * 109.47243 * 180.02562 * 5 4 2 7 7 N 1.46504 * 109.47076 * 179.97438 * 6 5 4 8 8 C 1.36938 * 119.99943 * 180.02562 * 7 6 5 9 9 H 1.08001 * 119.99664 * 0.02562 * 8 7 6 10 10 C 1.38814 * 119.99650 * 180.02562 * 8 7 6 11 11 N 1.31614 * 120.00361 * 359.97438 * 10 8 7 12 12 Si 1.86803 * 119.99393 * 179.97438 * 10 8 7 13 13 H 1.48498 * 109.47243 * 90.00095 * 12 10 8 14 14 H 1.48505 * 109.46756 * 209.99938 * 12 10 8 15 15 H 1.48499 * 109.47672 * 329.99736 * 12 10 8 16 16 N 1.46505 * 109.46864 * 119.99805 * 2 1 3 17 17 C 1.34777 * 119.99724 * 275.00347 * 16 2 1 18 18 O 1.21563 * 120.00284 * 359.97438 * 17 16 2 19 19 C 1.47768 * 119.99642 * 179.72314 * 17 16 2 20 20 C 1.40608 * 120.26852 * 0.27631 * 19 17 16 21 21 N 1.30796 * 121.52918 * 179.97438 * 20 19 17 22 22 C 1.33789 * 121.72416 * 0.02562 * 21 20 19 23 23 C 1.40755 * 120.82805 * 180.02562 * 22 21 20 24 24 F 1.35096 * 120.11307 * 359.95717 * 23 22 21 25 25 C 1.36329 * 119.76561 * 179.97438 * 23 22 21 26 26 C 1.39303 * 121.06205 * 359.97438 * 25 23 22 27 27 C 1.36143 * 120.86744 * 359.97438 * 26 25 23 28 28 C 1.40551 * 119.66772 * 0.02562 * 27 26 25 29 29 C 1.38993 * 120.26900 * 179.97438 * 19 17 16 30 30 H 1.09002 * 109.46916 * 179.97438 * 1 2 3 31 31 H 1.08991 * 109.47246 * 300.00597 * 1 2 3 32 32 H 1.08998 * 109.46377 * 60.00600 * 1 2 3 33 33 H 1.09003 * 109.47445 * 295.00334 * 4 2 1 34 34 H 1.09002 * 109.47282 * 55.00376 * 4 2 1 35 35 H 1.09003 * 109.47011 * 300.00402 * 5 4 2 36 36 H 1.09002 * 109.46836 * 59.99905 * 5 4 2 37 37 H 1.09003 * 109.47445 * 300.00136 * 6 5 4 38 38 H 1.09002 * 109.47282 * 60.00178 * 6 5 4 39 39 H 0.96997 * 119.99949 * 0.02562 * 7 6 5 40 40 H 0.96999 * 119.99900 * 179.97438 * 11 10 8 41 41 H 0.97000 * 119.99792 * 94.99915 * 16 2 1 42 42 H 1.07995 * 119.23569 * 359.97438 * 20 19 17 43 43 H 1.08004 * 119.47017 * 179.97438 * 25 23 22 44 44 H 1.08004 * 119.56745 * 179.97438 * 26 25 23 45 45 H 1.07999 * 120.16870 * 180.02562 * 27 26 25 46 46 H 1.08001 * 121.02071 * 0.02562 * 29 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 3.5650 -0.6134 -1.3136 6 6 4.0749 -1.3341 -2.5630 7 7 5.5350 -1.2302 -2.6250 8 6 6.2187 -1.8035 -3.6638 9 1 5.6816 -2.3319 -4.4375 10 6 7.6022 -1.7055 -3.7221 11 7 8.2567 -1.0612 -2.7794 12 14 8.5349 -2.4882 -5.1388 13 1 8.6670 -1.5078 -6.2463 14 1 9.8854 -2.8974 -4.6762 15 1 7.7938 -3.6817 -5.6202 16 7 2.0184 -0.6906 1.1963 17 6 2.1470 -0.0182 2.3572 18 8 1.8583 1.1614 2.4116 19 6 2.6337 -0.7162 3.5653 20 6 2.9697 -2.0804 3.5085 21 7 3.4033 -2.7224 4.5624 22 6 3.5484 -2.1152 5.7457 23 6 4.0171 -2.8243 6.8676 24 9 4.3267 -4.1349 6.7602 25 6 4.1573 -2.1839 8.0629 26 6 3.8440 -0.8331 8.1957 27 6 3.3889 -0.1139 7.1331 28 6 3.2318 -0.7406 5.8849 29 6 2.7689 -0.0282 4.7653 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8898 32 1 -0.3632 0.5138 -0.8901 33 1 1.7517 -1.7716 -1.2055 34 1 1.6056 -0.2618 -2.1369 35 1 3.8534 0.4369 -1.3572 36 1 3.9995 -1.0729 -0.4258 37 1 3.7866 -2.3844 -2.5199 38 1 3.6404 -0.8742 -3.4506 39 1 6.0173 -0.7554 -1.9302 40 1 9.2234 -0.9931 -2.8201 41 1 2.2490 -1.6318 1.1527 42 1 2.8674 -2.6104 2.5731 43 1 4.5170 -2.7327 8.9208 44 1 3.9638 -0.3499 9.1542 45 1 3.1499 0.9330 7.2487 46 1 2.5223 1.0209 4.8363 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001283204811.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:18:42 Heat of formation + Delta-G solvation = -50.095137 kcal Electronic energy + Delta-G solvation = -28582.903334 eV Core-core repulsion = 24385.735440 eV Total energy + Delta-G solvation = -4197.167895 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 2.12 seconds Orbital eigenvalues (eV) -49.96470 -42.10156 -40.73015 -38.19659 -37.87833 -36.54467 -34.44260 -34.25050 -32.97343 -31.67816 -30.91372 -30.60360 -27.24722 -26.17352 -25.32384 -24.76011 -23.19144 -22.78572 -22.24712 -21.70358 -19.76716 -19.23855 -19.11819 -18.50487 -17.87340 -17.23417 -16.91888 -16.67274 -16.57142 -16.19859 -15.93504 -15.64943 -15.51902 -15.40347 -15.11942 -15.01316 -14.88022 -14.43003 -14.30651 -14.21075 -13.84443 -13.43236 -13.20650 -13.18027 -13.00669 -12.81703 -12.78092 -12.52281 -12.38670 -12.25119 -12.07075 -11.86726 -11.73801 -11.57222 -11.50001 -11.38001 -10.93797 -10.69279 -10.24442 -10.01334 -9.28569 -9.01179 -7.96646 -5.25847 -1.00106 -0.62652 0.57851 1.37823 1.45984 1.48255 1.56716 2.01547 2.09038 2.55032 2.80414 2.84627 3.04484 3.37182 3.43849 3.57199 3.60355 3.63480 3.68016 3.82744 3.98327 4.09129 4.11840 4.27926 4.29482 4.38149 4.42229 4.59143 4.63292 4.69078 4.75369 4.84258 4.87628 4.92372 4.95028 5.01416 5.04467 5.13634 5.21281 5.25595 5.33644 5.35792 5.43542 5.50414 5.53922 5.67010 6.25999 6.40555 6.56667 7.06799 7.31418 8.09214 8.30668 9.27210 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.009400 B = 0.002324 C = 0.001985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2977.962924 B =12043.149314 C =14100.110955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.144 3.856 3 H 0.071 0.929 4 C -0.110 4.110 5 C -0.114 4.114 6 C 0.149 3.851 7 N -0.751 5.751 8 C -0.246 4.246 9 H 0.078 0.922 10 C -0.080 4.080 11 N -0.972 5.972 12 Si 0.975 3.025 13 H -0.286 1.286 14 H -0.296 1.296 15 H -0.267 1.267 16 N -0.706 5.706 17 C 0.568 3.432 18 O -0.568 6.568 19 C -0.198 4.198 20 C 0.162 3.838 21 N -0.499 5.499 22 C 0.087 3.913 23 C 0.079 3.921 24 F -0.139 7.139 25 C -0.110 4.110 26 C -0.087 4.087 27 C -0.088 4.088 28 C -0.102 4.102 29 C 0.017 3.983 30 H 0.072 0.928 31 H 0.046 0.954 32 H 0.080 0.920 33 H 0.089 0.911 34 H 0.094 0.906 35 H 0.047 0.953 36 H 0.056 0.944 37 H 0.025 0.975 38 H 0.021 0.979 39 H 0.371 0.629 40 H 0.251 0.749 41 H 0.410 0.590 42 H 0.183 0.817 43 H 0.171 0.829 44 H 0.183 0.817 45 H 0.173 0.827 46 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.849 1.420 23.985 29.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.040 3.960 3 H 0.089 0.911 4 C -0.149 4.149 5 C -0.152 4.152 6 C 0.023 3.977 7 N -0.394 5.394 8 C -0.378 4.378 9 H 0.096 0.904 10 C -0.272 4.272 11 N -0.623 5.623 12 Si 0.804 3.196 13 H -0.213 1.213 14 H -0.222 1.222 15 H -0.192 1.192 16 N -0.358 5.358 17 C 0.355 3.645 18 O -0.449 6.449 19 C -0.204 4.204 20 C -0.012 4.012 21 N -0.206 5.206 22 C -0.035 4.035 23 C 0.059 3.941 24 F -0.118 7.118 25 C -0.130 4.130 26 C -0.105 4.105 27 C -0.106 4.106 28 C -0.104 4.104 29 C -0.010 4.010 30 H 0.091 0.909 31 H 0.065 0.935 32 H 0.099 0.901 33 H 0.107 0.893 34 H 0.112 0.888 35 H 0.066 0.934 36 H 0.075 0.925 37 H 0.043 0.957 38 H 0.039 0.961 39 H 0.202 0.798 40 H 0.060 0.940 41 H 0.248 0.752 42 H 0.200 0.800 43 H 0.189 0.811 44 H 0.200 0.800 45 H 0.191 0.809 46 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -17.814 1.166 23.857 29.797 hybrid contribution 1.137 -0.185 -0.803 1.404 sum -16.677 0.981 23.055 28.471 Atomic orbital electron populations 1.22105 0.93481 1.03137 1.02579 1.21057 0.94966 0.96715 0.83268 0.91104 1.21776 0.93449 1.02375 0.97268 1.21610 0.96581 0.99805 0.97232 1.20875 0.83078 0.97444 0.96321 1.42667 1.02642 1.65962 1.28090 1.19683 0.90011 1.26375 1.01702 0.90443 1.25633 0.97579 1.02522 1.01456 1.69827 1.07053 1.48957 1.36462 0.85109 0.77628 0.78291 0.78564 1.21301 1.22223 1.19189 1.46013 1.66019 1.14624 1.09137 1.18038 0.77122 0.85992 0.83364 1.90760 1.52043 1.16558 1.85515 1.21001 1.07561 0.96147 0.95658 1.23348 0.90128 0.90393 0.97296 1.67912 1.14416 1.39066 0.99237 1.19312 0.99764 0.92122 0.92269 1.17554 1.03599 0.78696 0.94203 1.91491 1.90589 1.32901 1.96807 1.21445 0.98900 0.96757 0.95897 1.21248 0.96119 0.92026 1.01063 1.21565 0.97161 1.02115 0.89778 1.18843 1.02174 0.92672 0.96757 1.22209 0.88283 1.01026 0.89442 0.90911 0.93505 0.90071 0.89275 0.88771 0.93395 0.92518 0.95659 0.96102 0.79756 0.94035 0.75195 0.80021 0.81142 0.79969 0.80931 0.81016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.55 9.48 71.98 0.68 -1.87 16 2 C 0.14 2.92 2.58 44.99 0.12 3.03 16 3 H 0.07 1.77 7.58 -2.39 -0.02 1.75 16 4 C -0.11 -2.25 4.75 30.59 0.15 -2.10 16 5 C -0.11 -3.45 5.22 30.59 0.16 -3.29 16 6 C 0.15 5.79 6.26 86.38 0.54 6.33 16 7 N -0.75 -39.15 5.60 -343.44 -1.92 -41.07 16 8 C -0.25 -14.03 9.99 84.03 0.84 -13.19 16 9 H 0.08 4.20 7.83 -2.91 -0.02 4.18 16 10 C -0.08 -4.70 5.50 84.86 0.47 -4.23 16 11 N -0.97 -61.08 13.06 21.65 0.28 -60.80 16 12 Si 0.98 46.86 29.55 68.60 2.03 48.89 16 13 H -0.29 -13.45 7.11 99.48 0.71 -12.75 16 14 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16 15 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 16 N -0.71 -14.20 4.48 -445.47 -2.00 -16.20 16 17 C 0.57 13.67 7.74 86.76 0.67 14.34 16 18 O -0.57 -17.05 16.04 -3.91 -0.06 -17.11 16 19 C -0.20 -4.33 5.89 -20.00 -0.12 -4.44 16 20 C 0.16 3.57 10.68 85.43 0.91 4.48 16 21 N -0.50 -13.14 10.17 -187.54 -1.91 -15.05 16 22 C 0.09 2.04 6.61 40.33 0.27 2.31 16 23 C 0.08 1.67 7.30 22.44 0.16 1.83 16 24 F -0.14 -3.51 17.11 44.97 0.77 -2.74 16 25 C -0.11 -1.32 9.91 22.08 0.22 -1.10 16 26 C -0.09 -0.65 9.95 22.04 0.22 -0.43 16 27 C -0.09 -0.90 9.77 22.35 0.22 -0.69 16 28 C -0.10 -1.87 5.74 -21.29 -0.12 -1.99 16 29 C 0.02 0.32 9.46 23.01 0.22 0.54 16 30 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.06 1.75 7.75 -2.39 -0.02 1.73 16 37 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 39 H 0.37 20.76 7.67 -92.71 -0.71 20.05 16 40 H 0.25 15.25 8.31 -92.71 -0.77 14.48 16 41 H 0.41 6.57 6.63 -92.71 -0.61 5.95 16 42 H 0.18 3.01 6.37 -2.91 -0.02 2.99 16 43 H 0.17 1.08 8.06 -2.91 -0.02 1.06 16 44 H 0.18 -0.10 8.06 -2.91 -0.02 -0.12 16 45 H 0.17 0.67 8.06 -2.91 -0.02 0.65 16 46 H 0.17 2.71 7.70 -2.91 -0.02 2.69 16 Total: -1.00 -79.79 393.33 2.49 -77.31 By element: Atomic # 1 Polarization: 27.54 SS G_CDS: -0.30 Total: 27.23 kcal Atomic # 6 Polarization: -6.06 SS G_CDS: 5.60 Total: -0.46 kcal Atomic # 7 Polarization: -127.57 SS G_CDS: -5.55 Total: -133.11 kcal Atomic # 8 Polarization: -17.05 SS G_CDS: -0.06 Total: -17.11 kcal Atomic # 9 Polarization: -3.51 SS G_CDS: 0.77 Total: -2.74 kcal Atomic # 14 Polarization: 46.86 SS G_CDS: 2.03 Total: 48.89 kcal Total: -79.79 2.49 -77.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283204811.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.210 kcal (2) G-P(sol) polarization free energy of solvation -79.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.12 seconds