Wall clock time and date at job start Wed Apr 1 2020 05:06:25
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 H 1.08998 * 109.46591 * 2 1
4 4 C 1.52996 * 109.47275 * 120.00516 * 2 1 3
5 5 N 1.46500 * 109.47159 * 175.00141 * 4 2 1
6 6 C 1.34780 * 119.99931 * 179.97438 * 5 4 2
7 7 O 1.21631 * 120.00133 * 0.02562 * 6 5 4
8 8 C 1.47257 * 119.99560 * 179.97438 * 6 5 4
9 9 C 1.38932 * 120.91109 * 359.97438 * 8 6 5
10 10 C 1.39766 * 119.19202 * 180.02562 * 9 8 6
11 11 C 1.35065 * 121.27663 * 0.02562 * 10 9 8
12 12 N 1.36238 * 121.76690 * 359.96000 * 11 10 9
13 13 N 1.40084 * 132.48105 * 180.02562 * 12 11 10
14 14 C 1.31355 * 108.87818 * 180.02562 * 13 12 11
15 15 C 1.38882 * 108.94597 * 359.78501 * 14 13 12
16 16 C 1.37183 * 120.18922 * 0.04384 * 12 11 10
17 17 N 1.46904 * 109.46827 * 240.00144 * 2 1 3
18 18 C 1.46901 * 110.99486 * 85.00046 * 17 2 1
19 19 C 1.50701 * 109.46875 * 179.97438 * 18 17 2
20 20 O 1.21293 * 120.00201 * 359.97438 * 19 18 17
21 21 N 1.34777 * 120.00498 * 180.02562 * 19 18 17
22 22 C 1.37092 * 120.00580 * 180.02562 * 21 19 18
23 23 H 1.08005 * 119.99909 * 359.97438 * 22 21 19
24 24 C 1.38948 * 120.00206 * 180.02562 * 22 21 19
25 25 N 1.31406 * 120.00112 * 359.97438 * 24 22 21
26 26 Si 1.86798 * 120.00093 * 179.97438 * 24 22 21
27 27 H 1.48500 * 109.47396 * 359.97438 * 26 24 22
28 28 H 1.48501 * 109.47482 * 119.99568 * 26 24 22
29 29 H 1.48496 * 109.47112 * 239.99436 * 26 24 22
30 30 H 1.08998 * 109.47521 * 59.99741 * 1 2 3
31 31 H 1.09009 * 109.47205 * 179.97438 * 1 2 3
32 32 H 1.08998 * 109.47148 * 299.99617 * 1 2 3
33 33 H 1.09000 * 109.47236 * 54.99760 * 4 2 1
34 34 H 1.09006 * 109.47013 * 294.99801 * 4 2 1
35 35 H 0.97003 * 119.99867 * 359.97438 * 5 4 2
36 36 H 1.07999 * 120.39808 * 0.04544 * 9 8 6
37 37 H 1.08003 * 119.36110 * 180.02562 * 10 9 8
38 38 H 1.08005 * 119.11962 * 179.97438 * 11 10 9
39 39 H 1.08004 * 125.52906 * 180.02562 * 14 13 12
40 40 H 1.08000 * 126.22163 * 180.27003 * 15 14 13
41 41 H 1.00900 * 111.00325 * 321.04845 * 17 2 1
42 42 H 1.08997 * 109.47174 * 299.99469 * 18 17 2
43 43 H 1.08998 * 109.47417 * 60.00051 * 18 17 2
44 44 H 0.97006 * 119.99390 * 0.02562 * 21 19 18
45 45 H 0.96998 * 120.00281 * 180.02562 * 25 24 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0400 -0.7213 1.2491
5 7 3.5001 -0.8264 1.1904
6 6 4.1732 -1.4284 2.1910
7 8 3.5684 -1.8848 3.1425
8 6 5.6407 -1.5345 2.1317
9 6 6.3503 -1.0212 1.0532
10 6 7.7426 -1.1422 1.0335
11 6 8.4081 -1.7477 2.0408
12 7 7.7583 -2.2666 3.1200
13 7 8.2110 -2.9276 4.2691
14 6 7.1766 -3.2336 5.0187
15 6 6.0196 -2.7838 4.3959
16 6 6.3917 -2.1846 3.2073
17 7 2.0196 -0.6925 -1.1995
18 6 2.0824 0.2227 -2.3469
19 6 2.5883 -0.5213 -3.5558
20 8 2.8695 -1.6981 -3.4699
21 7 2.7295 0.1210 -4.7322
22 6 3.1892 -0.5559 -5.8321
23 1 3.4388 -1.6040 -5.7558
24 6 3.3352 0.1065 -7.0448
25 7 3.0320 1.3817 -7.1375
26 14 3.9624 -0.8158 -8.5433
27 1 4.2308 -2.2299 -8.1778
28 1 2.9391 -0.7677 -9.6183
29 1 5.2164 -0.1829 -9.0249
30 1 -0.3634 0.5138 -0.8899
31 1 -0.3634 -1.0277 -0.0005
32 1 -0.3633 0.5138 0.8900
33 1 1.6054 -1.7199 1.2950
34 1 1.7517 -0.1584 2.1369
35 1 3.9824 -0.4627 0.4314
36 1 5.8324 -0.5344 0.2401
37 1 8.2970 -0.7438 0.1966
38 1 9.4844 -1.8223 1.9897
39 1 7.2193 -3.7477 5.9675
40 1 5.0121 -2.8849 4.7715
41 1 1.4495 -1.4979 -1.4102
42 1 1.0870 0.6164 -2.5525
43 1 2.7588 1.0463 -2.1182
44 1 2.5056 1.0624 -4.8006
45 1 3.1336 1.8441 -7.9842
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001317257660.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:06:25
Heat of formation + Delta-G solvation = 39.414969 kcal
Electronic energy + Delta-G solvation = -28996.296956 eV
Core-core repulsion = 24822.930472 eV
Total energy + Delta-G solvation = -4173.366484 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 345.159 amu
Computer time = 6.08 seconds
Orbital eigenvalues (eV)
-42.08219 -39.69317 -38.48909 -37.27905 -36.93541 -34.24083 -33.84941 -32.97653
-31.36454 -30.86045 -30.75319 -28.82198 -26.66160 -26.27172 -24.57147 -23.94000
-22.86600 -21.86898 -21.07583 -20.48932 -19.38023 -18.02370 -17.76465 -17.55343
-16.73731 -16.26813 -16.00940 -15.79159 -15.64888 -15.52026 -15.12395 -14.65960
-14.50337 -14.24098 -14.06393 -13.92131 -13.45129 -13.28223 -13.16612 -12.67175
-12.60697 -12.57788 -12.34281 -12.25017 -12.00867 -11.76303 -11.64940 -11.47629
-11.12434 -11.05895 -10.98186 -10.54155 -10.39830 -10.29049 -10.01299 -9.59579
-9.58944 -9.07222 -8.58234 -8.19783 -8.03603 -7.82913 -6.48802 -3.89740
0.12495 0.91188 1.97551 2.52479 2.57648 3.07589 3.11082 3.22558
3.29360 3.44307 3.82337 3.98026 4.03715 4.17169 4.24009 4.42478
4.53539 4.70784 4.71982 4.92379 5.05074 5.07658 5.14142 5.20414
5.25526 5.43144 5.43950 5.51355 5.59401 5.63028 5.68675 5.71912
5.81365 5.87624 5.92547 5.99081 6.04042 6.18037 6.38680 6.46919
6.60806 7.05735 7.32813 7.48798 7.49327 7.51830 7.99113 8.16965
8.53388 9.11057 9.46670 9.97617 10.68808
Molecular weight = 345.16amu
Principal moments of inertia in cm(-1)
A = 0.011414 B = 0.002390 C = 0.002045
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2452.566113 B =11711.995413 C =13687.473877
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.181 4.181
2 C 0.067 3.933
3 H 0.085 0.915
4 C 0.136 3.864
5 N -0.705 5.705
6 C 0.566 3.434
7 O -0.537 6.537
8 C -0.130 4.130
9 C -0.030 4.030
10 C -0.176 4.176
11 C 0.137 3.863
12 N -0.286 5.286
13 N -0.320 5.320
14 C 0.077 3.923
15 C -0.259 4.259
16 C 0.129 3.871
17 N -0.665 5.665
18 C 0.049 3.951
19 C 0.438 3.562
20 O -0.582 6.582
21 N -0.563 5.563
22 C -0.299 4.299
23 H 0.103 0.897
24 C 0.023 3.977
25 N -0.901 5.901
26 Si 0.929 3.071
27 H -0.268 1.268
28 H -0.281 1.281
29 H -0.281 1.281
30 H 0.062 0.938
31 H 0.062 0.938
32 H 0.063 0.937
33 H 0.069 0.931
34 H 0.071 0.929
35 H 0.408 0.592
36 H 0.150 0.850
37 H 0.162 0.838
38 H 0.170 0.830
39 H 0.194 0.806
40 H 0.165 0.835
41 H 0.354 0.646
42 H 0.046 0.954
43 H 0.085 0.915
44 H 0.392 0.608
45 H 0.271 0.729
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.747 0.891 18.558 18.953
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.240 4.240
2 C -0.044 4.044
3 H 0.103 0.897
4 C 0.011 3.989
5 N -0.357 5.357
6 C 0.352 3.648
7 O -0.416 6.416
8 C -0.135 4.135
9 C -0.053 4.053
10 C -0.198 4.198
11 C 0.012 3.988
12 N -0.054 5.054
13 N -0.142 5.142
14 C -0.101 4.101
15 C -0.288 4.288
16 C 0.010 3.990
17 N -0.298 5.298
18 C -0.084 4.084
19 C 0.224 3.776
20 O -0.467 6.467
21 N -0.200 5.200
22 C -0.429 4.429
23 H 0.121 0.879
24 C -0.179 4.179
25 N -0.542 5.542
26 Si 0.756 3.244
27 H -0.192 1.192
28 H -0.207 1.207
29 H -0.207 1.207
30 H 0.081 0.919
31 H 0.081 0.919
32 H 0.082 0.918
33 H 0.088 0.912
34 H 0.089 0.911
35 H 0.245 0.755
36 H 0.168 0.832
37 H 0.180 0.820
38 H 0.187 0.813
39 H 0.211 0.789
40 H 0.183 0.817
41 H 0.175 0.825
42 H 0.064 0.936
43 H 0.104 0.896
44 H 0.225 0.775
45 H 0.081 0.919
Dipole moment (debyes) X Y Z Total
from point charges 5.488 -0.159 19.284 20.051
hybrid contribution -1.385 0.579 -1.556 2.162
sum 4.102 0.420 17.728 18.202
Atomic orbital electron populations
1.22430 0.96106 1.02807 1.02676 1.21867 0.93518 0.98316 0.90685
0.89710 1.21365 0.79495 1.01196 0.96814 1.45640 1.07964 1.59056
1.23004 1.17552 0.85869 0.78522 0.82822 1.90767 1.69561 1.47888
1.33367 1.20434 0.93578 1.04688 0.94819 1.21869 0.94226 0.93428
0.95810 1.20710 0.94693 1.04523 0.99844 1.21551 0.99460 0.93553
0.84265 1.46239 1.05664 1.38242 1.15234 1.77849 1.21901 1.19972
0.94500 1.23956 0.90022 0.96923 0.99188 1.21514 1.00716 1.10764
0.95792 1.20144 0.83170 0.99488 0.96165 1.60198 1.57759 1.09244
1.02563 1.21726 1.00127 0.95602 0.90906 1.19803 0.85350 0.88258
0.84205 1.90542 1.55301 1.16221 1.84596 1.41879 1.57664 1.12444
1.07971 1.19740 1.39935 0.96441 0.86750 0.87872 1.25261 0.97611
0.95767 0.99275 1.69610 1.48607 1.08849 1.27157 0.85812 0.78280
0.79655 0.80688 1.19202 1.20748 1.20715 0.91890 0.91914 0.91786
0.91248 0.91096 0.75488 0.83197 0.82006 0.81318 0.78928 0.81708
0.82539 0.93639 0.89645 0.77489 0.91879
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -1.59 9.16 37.16 0.34 -1.25 16
2 C 0.07 0.67 2.75 -67.71 -0.19 0.48 16
3 H 0.08 0.77 7.80 -51.93 -0.40 0.37 16
4 C 0.14 1.44 5.37 -4.04 -0.02 1.42 16
5 N -0.70 -8.09 5.34 -61.43 -0.33 -8.42 16
6 C 0.57 7.63 7.77 -12.59 -0.10 7.53 16
7 O -0.54 -8.65 15.19 5.25 0.08 -8.57 16
8 C -0.13 -1.61 6.06 -102.68 -0.62 -2.23 16
9 C -0.03 -0.29 9.63 -38.75 -0.37 -0.66 16
10 C -0.18 -1.41 9.90 -40.14 -0.40 -1.80 16
11 C 0.14 1.25 11.12 -16.72 -0.19 1.06 16
12 N -0.29 -3.55 3.89 -9.41 -0.04 -3.58 16
13 N -0.32 -4.08 12.66 30.51 0.39 -3.69 16
14 C 0.08 0.85 11.95 -17.52 -0.21 0.65 16
15 C -0.26 -3.34 10.18 -39.35 -0.40 -3.74 16
16 C 0.13 1.73 6.85 -82.19 -0.56 1.17 16
17 N -0.66 -8.91 5.31 -107.99 -0.57 -9.48 16
18 C 0.05 0.74 5.96 -4.97 -0.03 0.71 16
19 C 0.44 9.47 7.82 -10.98 -0.09 9.39 16
20 O -0.58 -14.77 15.78 5.55 0.09 -14.68 16
21 N -0.56 -13.37 5.29 -10.96 -0.06 -13.43 16
22 C -0.30 -7.98 9.68 -14.94 -0.14 -8.12 16
23 H 0.10 2.92 7.16 -52.48 -0.38 2.54 16
24 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16
25 N -0.90 -23.61 13.05 55.50 0.72 -22.89 16
26 Si 0.93 20.37 29.55 -169.99 -5.02 15.34 16
27 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16
28 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16
29 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16
30 H 0.06 0.58 7.45 -51.93 -0.39 0.19 16
31 H 0.06 0.56 8.13 -51.92 -0.42 0.14 16
32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16
33 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16
34 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16
35 H 0.41 4.33 6.24 -40.82 -0.25 4.08 16
36 H 0.15 1.20 6.49 -52.49 -0.34 0.86 16
37 H 0.16 0.80 8.06 -52.48 -0.42 0.38 16
38 H 0.17 1.00 8.06 -52.48 -0.42 0.58 16
39 H 0.19 1.34 8.06 -52.48 -0.42 0.92 16
40 H 0.17 2.14 7.10 -52.49 -0.37 1.76 16
41 H 0.35 5.24 8.17 -39.29 -0.32 4.92 16
42 H 0.05 0.63 7.44 -51.93 -0.39 0.24 16
43 H 0.09 1.14 8.05 -51.93 -0.42 0.72 16
44 H 0.39 8.89 7.90 -40.82 -0.32 8.57 16
45 H 0.27 6.73 8.31 -40.82 -0.34 6.39 16
LS Contribution 385.93 15.07 5.82 5.82
Total: -1.00 -34.31 385.93 -7.68 -41.98
By element:
Atomic # 1 Polarization: 22.20 SS G_CDS: -5.68 Total: 16.52 kcal
Atomic # 6 Polarization: 8.15 SS G_CDS: -3.07 Total: 5.08 kcal
Atomic # 7 Polarization: -61.61 SS G_CDS: 0.11 Total: -61.50 kcal
Atomic # 8 Polarization: -23.42 SS G_CDS: 0.17 Total: -23.25 kcal
Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.34 kcal
Total LS contribution 5.82 Total: 5.82 kcal
Total: -34.31 -7.68 -41.98 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001317257660.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 81.398 kcal
(2) G-P(sol) polarization free energy of solvation -34.306 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.092 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.677 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.983 kcal
(6) G-S(sol) free energy of system = (1) + (5) 39.415 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 6.08 seconds