Wall clock time and date at job start Wed Apr 1 2020 03:58:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.47189 * 2 1 4 4 N 1.46495 * 109.47336 * 120.00509 * 2 1 3 5 5 C 1.36935 * 120.00228 * 274.99517 * 4 2 1 6 6 H 1.08004 * 119.99738 * 0.02562 * 5 4 2 7 7 C 1.38816 * 120.00048 * 179.97438 * 5 4 2 8 8 N 1.31614 * 119.99603 * 180.02562 * 7 5 4 9 9 Si 1.86794 * 120.00080 * 0.02562 * 7 5 4 10 10 H 1.48503 * 109.47004 * 89.99823 * 9 7 5 11 11 H 1.48494 * 109.47126 * 209.99515 * 9 7 5 12 12 H 1.48498 * 109.47237 * 330.00021 * 9 7 5 13 13 C 1.53002 * 109.46703 * 240.00349 * 2 1 3 14 14 H 1.08998 * 109.51388 * 185.09950 * 13 2 1 15 15 C 1.53302 * 109.51242 * 64.99911 * 13 2 1 16 16 N 1.47152 * 108.38482 * 187.77115 * 15 13 2 17 17 C 1.34768 * 120.98287 * 230.51097 * 16 15 13 18 18 O 1.21569 * 120.00083 * 5.83443 * 17 16 15 19 19 C 1.47695 * 120.00276 * 185.83463 * 17 16 15 20 20 C 1.39972 * 120.38616 * 217.92906 * 19 17 16 21 21 N 1.31390 * 121.15971 * 179.97438 * 20 19 17 22 22 C 1.32540 * 121.79450 * 0.02562 * 21 20 19 23 23 N 1.37579 * 133.57000 * 180.02562 * 22 21 20 24 24 H 0.96998 * 126.23488 * 359.97438 * 23 22 21 25 25 C 1.36172 * 107.52581 * 179.97438 * 23 22 21 26 26 N 1.30058 * 110.11036 * 359.97438 * 25 23 22 27 27 C 1.35776 * 109.43754 * 0.02562 * 26 25 23 28 28 C 1.39484 * 133.74565 * 179.71264 * 27 26 25 29 29 C 1.47157 * 118.03299 * 50.78704 * 16 15 13 30 30 C 1.53709 * 108.16218 * 309.15560 * 29 16 15 31 31 O 1.42959 * 109.14899 * 52.54111 * 30 29 16 32 32 H 1.09008 * 109.47183 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.46847 * 299.99218 * 1 2 3 34 34 H 1.08995 * 109.47638 * 59.99772 * 1 2 3 35 35 H 0.97010 * 119.99984 * 94.99866 * 4 2 1 36 36 H 0.97001 * 119.99801 * 180.02562 * 8 7 5 37 37 H 1.08997 * 109.68065 * 68.04573 * 15 13 2 38 38 H 1.09005 * 109.70982 * 307.51647 * 15 13 2 39 39 H 1.08005 * 119.42426 * 0.02562 * 20 19 17 40 40 H 1.07994 * 124.94167 * 179.97438 * 25 23 22 41 41 H 1.08003 * 120.96818 * 0.28773 * 28 27 26 42 42 H 1.09005 * 109.68047 * 68.93869 * 29 16 15 43 43 H 1.09005 * 109.67979 * 189.48950 * 29 16 15 44 44 H 1.08994 * 109.65998 * 292.57345 * 30 29 16 45 45 H 1.09005 * 109.48448 * 172.39597 * 30 29 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6907 1.1960 5 6 2.1493 -0.0077 2.3757 6 1 1.8921 1.0402 2.4243 7 6 2.6116 -0.6623 3.5091 8 7 2.7369 -0.0059 4.6430 9 14 3.0557 -2.4748 3.4251 10 1 4.4886 -2.6169 3.0617 11 1 2.8158 -3.1051 4.7480 12 1 2.2161 -3.1431 2.3987 13 6 2.0399 -0.7212 -1.2493 14 1 3.1261 -0.8014 -1.2056 15 6 1.6348 0.0699 -2.4984 16 7 1.9696 -0.7332 -3.6852 17 6 2.6761 -0.2045 -4.7038 18 8 3.1375 0.9160 -4.6065 19 6 2.8898 -0.9865 -5.9385 20 6 4.1132 -0.9206 -6.6154 21 7 4.3200 -1.6100 -7.7146 22 6 3.3863 -2.3954 -8.2323 23 7 3.3383 -3.2069 -9.3422 24 1 4.0529 -3.3439 -9.9837 25 6 2.1048 -3.7827 -9.3762 26 7 1.3952 -3.3798 -8.3635 27 6 2.1278 -2.5177 -7.6128 28 6 1.8717 -1.7962 -6.4469 29 6 1.5048 -2.1287 -3.7296 30 6 1.9209 -2.8142 -2.4182 31 8 1.4658 -2.0289 -1.3137 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3633 0.5137 0.8901 34 1 -0.3634 0.5138 -0.8899 35 1 2.2491 -1.6319 1.1524 36 1 3.0603 -0.4632 5.4349 37 1 2.1796 1.0135 -2.5280 38 1 0.5627 0.2655 -2.4780 39 1 4.9014 -0.2926 -6.2269 40 1 1.7652 -4.4733 -10.1339 41 1 0.9167 -1.8678 -5.9476 42 1 0.4196 -2.1512 -3.8307 43 1 1.9635 -2.6417 -4.5749 44 1 3.0065 -2.9028 -2.3792 45 1 1.4725 -3.8066 -2.3685 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330402177.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:58:07 Heat of formation + Delta-G solvation = 17.585604 kcal Electronic energy + Delta-G solvation = -30140.300976 eV Core-core repulsion = 25965.987900 eV Total energy + Delta-G solvation = -4174.313076 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 4.47 seconds Orbital eigenvalues (eV) -43.47518 -41.68778 -40.00162 -38.88246 -37.29253 -35.98425 -34.84074 -34.33053 -32.83343 -32.01222 -30.99496 -30.23179 -28.60340 -26.47415 -25.60787 -25.03144 -24.58534 -23.39982 -22.73429 -21.39596 -20.70346 -19.94310 -19.71784 -18.75375 -18.17570 -17.73168 -17.16102 -17.03001 -16.78411 -16.65461 -16.40388 -16.28941 -15.73769 -15.49068 -15.10068 -15.01259 -14.73797 -14.55432 -14.42842 -14.27076 -14.14236 -13.79982 -13.69958 -13.30140 -13.15315 -12.92264 -12.47457 -12.39230 -12.25486 -12.19541 -12.09700 -11.82777 -11.75547 -11.60854 -11.30168 -11.09623 -10.96766 -10.43157 -10.06690 -9.74147 -9.62943 -9.30395 -8.00151 -5.32594 -0.47716 -0.27917 1.39089 1.41079 1.45791 1.49784 1.50277 1.68483 1.75719 2.50380 2.55915 2.72468 2.90037 3.27247 3.32226 3.38349 3.46720 3.58331 3.63669 3.84384 3.89415 3.97914 4.04862 4.11239 4.22312 4.25586 4.29345 4.46741 4.59798 4.64125 4.65303 4.72625 4.76358 4.78072 4.88082 4.93892 5.07528 5.18090 5.26115 5.31751 5.61825 5.79317 6.08366 6.14728 6.17669 6.25581 6.57686 6.68026 6.87699 7.10206 7.86704 8.06607 9.21312 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.021362 B = 0.002388 C = 0.002333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.436303 B =11722.374848 C =11997.636770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.180 3.820 3 H 0.062 0.938 4 N -0.748 5.748 5 C -0.225 4.225 6 H 0.060 0.940 7 C -0.065 4.065 8 N -0.984 5.984 9 Si 0.952 3.048 10 H -0.281 1.281 11 H -0.296 1.296 12 H -0.253 1.253 13 C 0.086 3.914 14 H 0.050 0.950 15 C 0.092 3.908 16 N -0.604 5.604 17 C 0.573 3.427 18 O -0.565 6.565 19 C -0.196 4.196 20 C 0.184 3.816 21 N -0.494 5.494 22 C 0.239 3.761 23 N -0.577 5.577 24 H 0.447 0.553 25 C 0.307 3.693 26 N -0.520 5.520 27 C -0.018 4.018 28 C 0.018 3.982 29 C 0.068 3.932 30 C 0.039 3.961 31 O -0.380 6.380 32 H 0.054 0.946 33 H 0.033 0.967 34 H 0.074 0.926 35 H 0.367 0.633 36 H 0.257 0.743 37 H 0.094 0.906 38 H 0.100 0.900 39 H 0.179 0.821 40 H 0.281 0.719 41 H 0.166 0.834 42 H 0.104 0.896 43 H 0.111 0.889 44 H 0.050 0.950 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.213 -12.189 -35.871 37.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.072 3.928 3 H 0.080 0.920 4 N -0.391 5.391 5 C -0.356 4.356 6 H 0.078 0.922 7 C -0.257 4.257 8 N -0.635 5.635 9 Si 0.780 3.220 10 H -0.207 1.207 11 H -0.223 1.223 12 H -0.178 1.178 13 C 0.027 3.973 14 H 0.068 0.932 15 C -0.031 4.031 16 N -0.337 5.337 17 C 0.362 3.638 18 O -0.445 6.445 19 C -0.204 4.204 20 C 0.015 3.985 21 N -0.207 5.207 22 C 0.001 3.999 23 N -0.193 5.193 24 H 0.290 0.710 25 C 0.020 3.980 26 N -0.239 5.239 27 C -0.137 4.137 28 C -0.009 4.009 29 C -0.054 4.054 30 C -0.038 4.038 31 O -0.299 6.299 32 H 0.073 0.927 33 H 0.052 0.948 34 H 0.093 0.907 35 H 0.200 0.800 36 H 0.065 0.935 37 H 0.112 0.888 38 H 0.118 0.882 39 H 0.196 0.804 40 H 0.297 0.703 41 H 0.183 0.817 42 H 0.122 0.878 43 H 0.129 0.871 44 H 0.068 0.932 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -2.202 -11.717 -35.810 37.742 hybrid contribution 1.074 -0.453 0.557 1.292 sum -1.128 -12.170 -35.253 37.311 Atomic orbital electron populations 1.22213 0.96454 1.01666 1.00695 1.20399 0.94087 0.94696 0.83643 0.92038 1.42715 1.79935 1.09636 1.06837 1.19052 1.34747 0.94461 0.87327 0.92186 1.25452 1.02600 1.02372 0.95232 1.69878 1.54874 1.37616 1.01113 0.85440 0.78432 0.81223 0.76927 1.20746 1.22312 1.17770 1.22615 0.96576 0.83847 0.94310 0.93193 1.22324 1.02840 0.95132 0.82789 1.48096 1.53848 1.13781 1.17955 1.18154 0.77249 0.85483 0.82900 1.90804 1.50832 1.20893 1.81958 1.20395 0.97777 1.03535 0.98678 1.22760 0.95281 0.92916 0.87531 1.66524 1.32572 1.08709 1.12881 1.19512 0.92908 0.95750 0.91762 1.43029 1.17381 1.36999 1.21856 0.70995 1.26709 0.78710 0.95406 0.97182 1.70556 1.31938 1.14742 1.06712 1.19724 0.93009 1.02194 0.98797 1.21149 0.99206 0.89166 0.91381 1.23083 1.02153 0.80247 0.99920 1.23293 0.99652 0.95921 0.84968 1.88040 1.67868 1.25680 1.48278 0.92711 0.94815 0.90712 0.79994 0.93454 0.88809 0.88166 0.80387 0.70334 0.81680 0.87770 0.87087 0.93211 0.85078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.11 9.06 71.98 0.65 -4.46 16 2 C 0.18 6.79 2.77 44.99 0.12 6.92 16 3 H 0.06 2.41 8.08 -2.39 -0.02 2.39 16 4 N -0.75 -35.61 4.91 -322.94 -1.58 -37.20 16 5 C -0.22 -12.98 10.41 84.03 0.87 -12.11 16 6 H 0.06 3.76 8.06 -2.91 -0.02 3.74 16 7 C -0.07 -3.93 5.50 84.86 0.47 -3.46 16 8 N -0.98 -64.10 13.97 21.65 0.30 -63.80 16 9 Si 0.95 46.86 27.74 68.60 1.90 48.76 16 10 H -0.28 -13.53 7.11 99.48 0.71 -12.82 16 11 H -0.30 -14.70 7.11 99.48 0.71 -14.00 16 12 H -0.25 -11.46 6.52 99.48 0.65 -10.82 16 13 C 0.09 2.64 2.61 30.70 0.08 2.72 16 14 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 15 C 0.09 2.35 5.84 86.36 0.50 2.85 16 16 N -0.60 -13.38 3.01 -820.09 -2.47 -15.86 16 17 C 0.57 14.12 7.37 86.74 0.64 14.76 16 18 O -0.57 -18.07 16.36 -3.93 -0.06 -18.14 16 19 C -0.20 -3.91 5.20 -20.01 -0.10 -4.02 16 20 C 0.18 3.68 10.77 85.18 0.92 4.60 16 21 N -0.49 -9.62 10.36 -191.76 -1.99 -11.61 16 22 C 0.24 3.88 8.45 133.91 1.13 5.02 16 23 N -0.58 -3.92 6.20 -195.74 -1.21 -5.14 16 24 H 0.45 0.12 8.96 -92.71 -0.83 -0.71 16 25 C 0.31 1.41 12.97 180.03 2.33 3.75 16 26 N -0.52 -7.23 11.29 -191.94 -2.17 -9.39 16 27 C -0.02 -0.30 7.23 39.46 0.29 -0.02 16 28 C 0.02 0.31 7.57 22.92 0.17 0.48 16 29 C 0.07 1.09 5.04 86.49 0.44 1.52 16 30 C 0.04 0.77 7.00 72.22 0.51 1.27 16 31 O -0.38 -10.90 9.24 -148.98 -1.38 -12.27 16 32 H 0.05 1.88 7.56 -2.38 -0.02 1.86 16 33 H 0.03 1.28 8.14 -2.38 -0.02 1.26 16 34 H 0.07 1.98 6.42 -2.39 -0.02 1.96 16 35 H 0.37 17.23 5.45 -92.70 -0.51 16.72 16 36 H 0.26 15.95 8.31 -92.71 -0.77 15.18 16 37 H 0.09 2.64 7.06 -2.39 -0.02 2.62 16 38 H 0.10 2.26 6.28 -2.38 -0.01 2.25 16 39 H 0.18 3.32 8.04 -2.91 -0.02 3.30 16 40 H 0.28 -2.16 8.06 -2.91 -0.02 -2.19 16 41 H 0.17 2.21 6.38 -2.91 -0.02 2.19 16 42 H 0.10 1.32 8.02 -2.38 -0.02 1.30 16 43 H 0.11 1.47 4.88 -2.38 -0.01 1.45 16 44 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 45 H 0.13 1.91 8.14 -2.38 -0.02 1.89 16 Total: -1.00 -84.59 365.71 0.03 -84.56 By element: Atomic # 1 Polarization: 20.60 SS G_CDS: -0.33 Total: 20.27 kcal Atomic # 6 Polarization: 10.79 SS G_CDS: 9.02 Total: 19.82 kcal Atomic # 7 Polarization: -133.87 SS G_CDS: -9.12 Total: -142.99 kcal Atomic # 8 Polarization: -28.97 SS G_CDS: -1.44 Total: -30.41 kcal Atomic # 14 Polarization: 46.86 SS G_CDS: 1.90 Total: 48.76 kcal Total: -84.59 0.03 -84.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330402177.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.141 kcal (2) G-P(sol) polarization free energy of solvation -84.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.555 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.47 seconds