Wall clock time and date at job start Wed Apr 1 2020 03:58:07
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 H 1.08998 * 109.47189 * 2 1
4 4 N 1.46495 * 109.47336 * 120.00509 * 2 1 3
5 5 C 1.36935 * 120.00228 * 274.99517 * 4 2 1
6 6 H 1.08004 * 119.99738 * 0.02562 * 5 4 2
7 7 C 1.38816 * 120.00048 * 179.97438 * 5 4 2
8 8 N 1.31614 * 119.99603 * 180.02562 * 7 5 4
9 9 Si 1.86794 * 120.00080 * 0.02562 * 7 5 4
10 10 H 1.48503 * 109.47004 * 89.99823 * 9 7 5
11 11 H 1.48494 * 109.47126 * 209.99515 * 9 7 5
12 12 H 1.48498 * 109.47237 * 330.00021 * 9 7 5
13 13 C 1.53002 * 109.46703 * 240.00349 * 2 1 3
14 14 H 1.08998 * 109.51388 * 185.09950 * 13 2 1
15 15 C 1.53302 * 109.51242 * 64.99911 * 13 2 1
16 16 N 1.47152 * 108.38482 * 187.77115 * 15 13 2
17 17 C 1.34768 * 120.98287 * 230.51097 * 16 15 13
18 18 O 1.21569 * 120.00083 * 5.83443 * 17 16 15
19 19 C 1.47695 * 120.00276 * 185.83463 * 17 16 15
20 20 C 1.39972 * 120.38616 * 217.92906 * 19 17 16
21 21 N 1.31390 * 121.15971 * 179.97438 * 20 19 17
22 22 C 1.32540 * 121.79450 * 0.02562 * 21 20 19
23 23 N 1.37579 * 133.57000 * 180.02562 * 22 21 20
24 24 H 0.96998 * 126.23488 * 359.97438 * 23 22 21
25 25 C 1.36172 * 107.52581 * 179.97438 * 23 22 21
26 26 N 1.30058 * 110.11036 * 359.97438 * 25 23 22
27 27 C 1.35776 * 109.43754 * 0.02562 * 26 25 23
28 28 C 1.39484 * 133.74565 * 179.71264 * 27 26 25
29 29 C 1.47157 * 118.03299 * 50.78704 * 16 15 13
30 30 C 1.53709 * 108.16218 * 309.15560 * 29 16 15
31 31 O 1.42959 * 109.14899 * 52.54111 * 30 29 16
32 32 H 1.09008 * 109.47183 * 180.02562 * 1 2 3
33 33 H 1.09005 * 109.46847 * 299.99218 * 1 2 3
34 34 H 1.08995 * 109.47638 * 59.99772 * 1 2 3
35 35 H 0.97010 * 119.99984 * 94.99866 * 4 2 1
36 36 H 0.97001 * 119.99801 * 180.02562 * 8 7 5
37 37 H 1.08997 * 109.68065 * 68.04573 * 15 13 2
38 38 H 1.09005 * 109.70982 * 307.51647 * 15 13 2
39 39 H 1.08005 * 119.42426 * 0.02562 * 20 19 17
40 40 H 1.07994 * 124.94167 * 179.97438 * 25 23 22
41 41 H 1.08003 * 120.96818 * 0.28773 * 28 27 26
42 42 H 1.09005 * 109.68047 * 68.93869 * 29 16 15
43 43 H 1.09005 * 109.67979 * 189.48950 * 29 16 15
44 44 H 1.08994 * 109.65998 * 292.57345 * 30 29 16
45 45 H 1.09005 * 109.48448 * 172.39597 * 30 29 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 7 2.0184 -0.6907 1.1960
5 6 2.1493 -0.0077 2.3757
6 1 1.8921 1.0402 2.4243
7 6 2.6116 -0.6623 3.5091
8 7 2.7369 -0.0059 4.6430
9 14 3.0557 -2.4748 3.4251
10 1 4.4886 -2.6169 3.0617
11 1 2.8158 -3.1051 4.7480
12 1 2.2161 -3.1431 2.3987
13 6 2.0399 -0.7212 -1.2493
14 1 3.1261 -0.8014 -1.2056
15 6 1.6348 0.0699 -2.4984
16 7 1.9696 -0.7332 -3.6852
17 6 2.6761 -0.2045 -4.7038
18 8 3.1375 0.9160 -4.6065
19 6 2.8898 -0.9865 -5.9385
20 6 4.1132 -0.9206 -6.6154
21 7 4.3200 -1.6100 -7.7146
22 6 3.3863 -2.3954 -8.2323
23 7 3.3383 -3.2069 -9.3422
24 1 4.0529 -3.3439 -9.9837
25 6 2.1048 -3.7827 -9.3762
26 7 1.3952 -3.3798 -8.3635
27 6 2.1278 -2.5177 -7.6128
28 6 1.8717 -1.7962 -6.4469
29 6 1.5048 -2.1287 -3.7296
30 6 1.9209 -2.8142 -2.4182
31 8 1.4658 -2.0289 -1.3137
32 1 -0.3634 -1.0277 0.0005
33 1 -0.3633 0.5137 0.8901
34 1 -0.3634 0.5138 -0.8899
35 1 2.2491 -1.6319 1.1524
36 1 3.0603 -0.4632 5.4349
37 1 2.1796 1.0135 -2.5280
38 1 0.5627 0.2655 -2.4780
39 1 4.9014 -0.2926 -6.2269
40 1 1.7652 -4.4733 -10.1339
41 1 0.9167 -1.8678 -5.9476
42 1 0.4196 -2.1512 -3.8307
43 1 1.9635 -2.6417 -4.5749
44 1 3.0065 -2.9028 -2.3792
45 1 1.4725 -3.8066 -2.3685
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001330402177.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:58:07
Heat of formation + Delta-G solvation = 17.585604 kcal
Electronic energy + Delta-G solvation = -30140.300976 eV
Core-core repulsion = 25965.987900 eV
Total energy + Delta-G solvation = -4174.313076 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 345.159 amu
Computer time = 4.47 seconds
Orbital eigenvalues (eV)
-43.47518 -41.68778 -40.00162 -38.88246 -37.29253 -35.98425 -34.84074 -34.33053
-32.83343 -32.01222 -30.99496 -30.23179 -28.60340 -26.47415 -25.60787 -25.03144
-24.58534 -23.39982 -22.73429 -21.39596 -20.70346 -19.94310 -19.71784 -18.75375
-18.17570 -17.73168 -17.16102 -17.03001 -16.78411 -16.65461 -16.40388 -16.28941
-15.73769 -15.49068 -15.10068 -15.01259 -14.73797 -14.55432 -14.42842 -14.27076
-14.14236 -13.79982 -13.69958 -13.30140 -13.15315 -12.92264 -12.47457 -12.39230
-12.25486 -12.19541 -12.09700 -11.82777 -11.75547 -11.60854 -11.30168 -11.09623
-10.96766 -10.43157 -10.06690 -9.74147 -9.62943 -9.30395 -8.00151 -5.32594
-0.47716 -0.27917 1.39089 1.41079 1.45791 1.49784 1.50277 1.68483
1.75719 2.50380 2.55915 2.72468 2.90037 3.27247 3.32226 3.38349
3.46720 3.58331 3.63669 3.84384 3.89415 3.97914 4.04862 4.11239
4.22312 4.25586 4.29345 4.46741 4.59798 4.64125 4.65303 4.72625
4.76358 4.78072 4.88082 4.93892 5.07528 5.18090 5.26115 5.31751
5.61825 5.79317 6.08366 6.14728 6.17669 6.25581 6.57686 6.68026
6.87699 7.10206 7.86704 8.06607 9.21312
Molecular weight = 345.16amu
Principal moments of inertia in cm(-1)
A = 0.021362 B = 0.002388 C = 0.002333
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1310.436303 B =11722.374848 C =11997.636770
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.151 4.151
2 C 0.180 3.820
3 H 0.062 0.938
4 N -0.748 5.748
5 C -0.225 4.225
6 H 0.060 0.940
7 C -0.065 4.065
8 N -0.984 5.984
9 Si 0.952 3.048
10 H -0.281 1.281
11 H -0.296 1.296
12 H -0.253 1.253
13 C 0.086 3.914
14 H 0.050 0.950
15 C 0.092 3.908
16 N -0.604 5.604
17 C 0.573 3.427
18 O -0.565 6.565
19 C -0.196 4.196
20 C 0.184 3.816
21 N -0.494 5.494
22 C 0.239 3.761
23 N -0.577 5.577
24 H 0.447 0.553
25 C 0.307 3.693
26 N -0.520 5.520
27 C -0.018 4.018
28 C 0.018 3.982
29 C 0.068 3.932
30 C 0.039 3.961
31 O -0.380 6.380
32 H 0.054 0.946
33 H 0.033 0.967
34 H 0.074 0.926
35 H 0.367 0.633
36 H 0.257 0.743
37 H 0.094 0.906
38 H 0.100 0.900
39 H 0.179 0.821
40 H 0.281 0.719
41 H 0.166 0.834
42 H 0.104 0.896
43 H 0.111 0.889
44 H 0.050 0.950
45 H 0.131 0.869
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.213 -12.189 -35.871 37.950
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.210 4.210
2 C 0.072 3.928
3 H 0.080 0.920
4 N -0.391 5.391
5 C -0.356 4.356
6 H 0.078 0.922
7 C -0.257 4.257
8 N -0.635 5.635
9 Si 0.780 3.220
10 H -0.207 1.207
11 H -0.223 1.223
12 H -0.178 1.178
13 C 0.027 3.973
14 H 0.068 0.932
15 C -0.031 4.031
16 N -0.337 5.337
17 C 0.362 3.638
18 O -0.445 6.445
19 C -0.204 4.204
20 C 0.015 3.985
21 N -0.207 5.207
22 C 0.001 3.999
23 N -0.193 5.193
24 H 0.290 0.710
25 C 0.020 3.980
26 N -0.239 5.239
27 C -0.137 4.137
28 C -0.009 4.009
29 C -0.054 4.054
30 C -0.038 4.038
31 O -0.299 6.299
32 H 0.073 0.927
33 H 0.052 0.948
34 H 0.093 0.907
35 H 0.200 0.800
36 H 0.065 0.935
37 H 0.112 0.888
38 H 0.118 0.882
39 H 0.196 0.804
40 H 0.297 0.703
41 H 0.183 0.817
42 H 0.122 0.878
43 H 0.129 0.871
44 H 0.068 0.932
45 H 0.149 0.851
Dipole moment (debyes) X Y Z Total
from point charges -2.202 -11.717 -35.810 37.742
hybrid contribution 1.074 -0.453 0.557 1.292
sum -1.128 -12.170 -35.253 37.311
Atomic orbital electron populations
1.22213 0.96454 1.01666 1.00695 1.20399 0.94087 0.94696 0.83643
0.92038 1.42715 1.79935 1.09636 1.06837 1.19052 1.34747 0.94461
0.87327 0.92186 1.25452 1.02600 1.02372 0.95232 1.69878 1.54874
1.37616 1.01113 0.85440 0.78432 0.81223 0.76927 1.20746 1.22312
1.17770 1.22615 0.96576 0.83847 0.94310 0.93193 1.22324 1.02840
0.95132 0.82789 1.48096 1.53848 1.13781 1.17955 1.18154 0.77249
0.85483 0.82900 1.90804 1.50832 1.20893 1.81958 1.20395 0.97777
1.03535 0.98678 1.22760 0.95281 0.92916 0.87531 1.66524 1.32572
1.08709 1.12881 1.19512 0.92908 0.95750 0.91762 1.43029 1.17381
1.36999 1.21856 0.70995 1.26709 0.78710 0.95406 0.97182 1.70556
1.31938 1.14742 1.06712 1.19724 0.93009 1.02194 0.98797 1.21149
0.99206 0.89166 0.91381 1.23083 1.02153 0.80247 0.99920 1.23293
0.99652 0.95921 0.84968 1.88040 1.67868 1.25680 1.48278 0.92711
0.94815 0.90712 0.79994 0.93454 0.88809 0.88166 0.80387 0.70334
0.81680 0.87770 0.87087 0.93211 0.85078
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -5.11 9.06 71.98 0.65 -4.46 16
2 C 0.18 6.79 2.77 44.99 0.12 6.92 16
3 H 0.06 2.41 8.08 -2.39 -0.02 2.39 16
4 N -0.75 -35.61 4.91 -322.94 -1.58 -37.20 16
5 C -0.22 -12.98 10.41 84.03 0.87 -12.11 16
6 H 0.06 3.76 8.06 -2.91 -0.02 3.74 16
7 C -0.07 -3.93 5.50 84.86 0.47 -3.46 16
8 N -0.98 -64.10 13.97 21.65 0.30 -63.80 16
9 Si 0.95 46.86 27.74 68.60 1.90 48.76 16
10 H -0.28 -13.53 7.11 99.48 0.71 -12.82 16
11 H -0.30 -14.70 7.11 99.48 0.71 -14.00 16
12 H -0.25 -11.46 6.52 99.48 0.65 -10.82 16
13 C 0.09 2.64 2.61 30.70 0.08 2.72 16
14 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16
15 C 0.09 2.35 5.84 86.36 0.50 2.85 16
16 N -0.60 -13.38 3.01 -820.09 -2.47 -15.86 16
17 C 0.57 14.12 7.37 86.74 0.64 14.76 16
18 O -0.57 -18.07 16.36 -3.93 -0.06 -18.14 16
19 C -0.20 -3.91 5.20 -20.01 -0.10 -4.02 16
20 C 0.18 3.68 10.77 85.18 0.92 4.60 16
21 N -0.49 -9.62 10.36 -191.76 -1.99 -11.61 16
22 C 0.24 3.88 8.45 133.91 1.13 5.02 16
23 N -0.58 -3.92 6.20 -195.74 -1.21 -5.14 16
24 H 0.45 0.12 8.96 -92.71 -0.83 -0.71 16
25 C 0.31 1.41 12.97 180.03 2.33 3.75 16
26 N -0.52 -7.23 11.29 -191.94 -2.17 -9.39 16
27 C -0.02 -0.30 7.23 39.46 0.29 -0.02 16
28 C 0.02 0.31 7.57 22.92 0.17 0.48 16
29 C 0.07 1.09 5.04 86.49 0.44 1.52 16
30 C 0.04 0.77 7.00 72.22 0.51 1.27 16
31 O -0.38 -10.90 9.24 -148.98 -1.38 -12.27 16
32 H 0.05 1.88 7.56 -2.38 -0.02 1.86 16
33 H 0.03 1.28 8.14 -2.38 -0.02 1.26 16
34 H 0.07 1.98 6.42 -2.39 -0.02 1.96 16
35 H 0.37 17.23 5.45 -92.70 -0.51 16.72 16
36 H 0.26 15.95 8.31 -92.71 -0.77 15.18 16
37 H 0.09 2.64 7.06 -2.39 -0.02 2.62 16
38 H 0.10 2.26 6.28 -2.38 -0.01 2.25 16
39 H 0.18 3.32 8.04 -2.91 -0.02 3.30 16
40 H 0.28 -2.16 8.06 -2.91 -0.02 -2.19 16
41 H 0.17 2.21 6.38 -2.91 -0.02 2.19 16
42 H 0.10 1.32 8.02 -2.38 -0.02 1.30 16
43 H 0.11 1.47 4.88 -2.38 -0.01 1.45 16
44 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16
45 H 0.13 1.91 8.14 -2.38 -0.02 1.89 16
Total: -1.00 -84.59 365.71 0.03 -84.56
By element:
Atomic # 1 Polarization: 20.60 SS G_CDS: -0.33 Total: 20.27 kcal
Atomic # 6 Polarization: 10.79 SS G_CDS: 9.02 Total: 19.82 kcal
Atomic # 7 Polarization: -133.87 SS G_CDS: -9.12 Total: -142.99 kcal
Atomic # 8 Polarization: -28.97 SS G_CDS: -1.44 Total: -30.41 kcal
Atomic # 14 Polarization: 46.86 SS G_CDS: 1.90 Total: 48.76 kcal
Total: -84.59 0.03 -84.56 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001330402177.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 102.141 kcal
(2) G-P(sol) polarization free energy of solvation -84.589 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.552 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.034 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.555 kcal
(6) G-S(sol) free energy of system = (1) + (5) 17.586 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 4.47 seconds