Wall clock time and date at job start Wed Apr 1 2020 03:02:14
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.45199 * 1
3 3 C 1.34222 * 116.99814 * 2 1
4 4 O 1.20824 * 120.00493 * 359.97438 * 3 2 1
5 5 C 1.50709 * 119.99648 * 179.97438 * 3 2 1
6 6 C 1.53000 * 109.46816 * 179.97438 * 5 3 2
7 7 N 1.46506 * 109.46773 * 180.02562 * 6 5 3
8 8 C 1.36924 * 120.00257 * 265.05699 * 7 6 5
9 9 H 1.07997 * 120.00169 * 132.27869 * 8 7 6
10 10 C 1.38803 * 119.99878 * 312.28109 * 8 7 6
11 11 N 1.31562 * 120.00187 * 171.61444 * 10 8 7
12 12 Si 1.86802 * 119.99858 * 351.60892 * 10 8 7
13 13 H 1.48499 * 109.46875 * 91.28488 * 12 10 8
14 14 H 1.48501 * 109.47030 * 211.27936 * 12 10 8
15 15 H 1.48498 * 109.47033 * 331.28009 * 12 10 8
16 16 C 1.38226 * 119.99934 * 85.05612 * 7 6 5
17 17 N 1.31566 * 126.45543 * 353.91744 * 16 7 6
18 18 N 1.28422 * 110.49562 * 179.97438 * 17 16 7
19 19 N 1.28904 * 110.35189 * 359.71417 * 18 17 16
20 20 N 1.35432 * 126.45790 * 173.87482 * 16 7 6
21 21 C 1.46497 * 127.38929 * 0.03141 * 20 16 7
22 22 H 1.09001 * 109.47247 * 333.02348 * 21 20 16
23 23 C 1.53001 * 109.46886 * 93.01398 * 21 20 16
24 24 C 1.50697 * 109.47597 * 213.01451 * 21 20 16
25 25 C 1.38236 * 120.00129 * 299.73134 * 24 21 20
26 26 C 1.38239 * 120.00048 * 179.78502 * 25 24 21
27 27 C 1.38234 * 119.99814 * 0.44434 * 26 25 24
28 28 C 1.38235 * 119.99953 * 359.80846 * 27 26 25
29 29 C 1.38231 * 120.00108 * 359.97438 * 28 27 26
30 30 H 1.09004 * 109.47375 * 59.99936 * 1 2 3
31 31 H 1.09004 * 109.47706 * 180.02562 * 1 2 3
32 32 H 1.09005 * 109.47089 * 300.00087 * 1 2 3
33 33 H 1.09001 * 109.46575 * 60.00360 * 5 3 2
34 34 H 1.08996 * 109.47141 * 299.99939 * 5 3 2
35 35 H 1.09001 * 109.47024 * 60.00917 * 6 5 3
36 36 H 1.08996 * 109.47445 * 300.00035 * 6 5 3
37 37 H 0.97001 * 120.00609 * 179.97438 * 11 10 8
38 38 H 1.09007 * 109.46972 * 60.00058 * 23 21 20
39 39 H 1.08998 * 109.47116 * 300.00320 * 23 21 20
40 40 H 1.08999 * 109.47235 * 180.02562 * 23 21 20
41 41 H 1.08002 * 119.99689 * 359.97438 * 25 24 21
42 42 H 1.07998 * 119.99880 * 180.27020 * 26 25 24
43 43 H 1.08000 * 119.99692 * 179.83340 * 27 26 25
44 44 H 1.08002 * 120.00066 * 180.02562 * 28 27 26
45 45 H 1.08004 * 119.99824 * 180.02562 * 29 28 27
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4520 0.0000 0.0000
3 6 2.0613 1.1959 0.0000
4 8 1.4033 2.2093 -0.0005
5 6 3.5663 1.2748 0.0006
6 6 4.0001 2.7420 -0.0002
7 7 5.4632 2.8186 -0.0002
8 6 6.1416 2.9571 1.1810
9 1 6.9907 2.3245 1.3935
10 6 5.7378 3.9104 2.1056
11 7 6.2799 3.9355 3.3041
12 14 4.4250 5.1580 1.6480
13 1 3.0884 4.6297 2.0215
14 1 4.6754 6.4290 2.3741
15 1 4.4676 5.4073 0.1847
16 6 6.1587 2.7511 -1.1928
17 7 5.6503 2.5082 -2.3817
18 7 6.5724 2.5167 -3.2754
19 7 7.7165 2.7669 -2.7368
20 7 7.4919 2.9234 -1.3578
21 6 8.4859 3.2160 -0.3223
22 1 8.0057 3.7385 0.5051
23 6 9.0937 1.9069 0.1856
24 6 9.5737 4.0837 -0.9008
25 6 10.3303 3.6269 -1.9638
26 6 11.3252 4.4247 -2.4974
27 6 11.5696 5.6755 -1.9621
28 6 10.8165 6.1301 -0.8957
29 6 9.8187 5.3342 -0.3651
30 1 -0.3634 0.5138 -0.8900
31 1 -0.3635 -1.0277 0.0005
32 1 -0.3633 0.5139 0.8900
33 1 3.9563 0.7805 -0.8892
34 1 3.9557 0.7809 0.8908
35 1 3.6101 3.2366 0.8894
36 1 3.6108 3.2356 -0.8906
37 1 5.9980 4.6019 3.9501
38 1 9.5739 1.3843 -0.6418
39 1 8.3069 1.2793 0.6041
40 1 9.8330 2.1245 0.9564
41 1 10.1420 2.6480 -2.3793
42 1 11.9133 4.0695 -3.3307
43 1 12.3487 6.2977 -2.3772
44 1 11.0072 7.1076 -0.4777
45 1 9.2301 5.6896 0.4678
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001351036172.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:02:14
Heat of formation + Delta-G solvation = 76.575075 kcal
Electronic energy + Delta-G solvation = -30985.984496 eV
Core-core repulsion = 26814.229395 eV
Total energy + Delta-G solvation = -4171.755100 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 345.159 amu
Computer time = 1.11 seconds
Orbital eigenvalues (eV)
-41.81231 -40.26633 -39.11224 -37.38050 -36.27347 -35.22760 -32.72745 -31.73811
-31.00319 -30.64073 -29.85435 -28.93537 -27.67664 -25.37835 -24.39012 -23.75243
-22.40296 -22.35501 -20.82698 -20.29800 -20.15413 -17.87241 -17.46863 -16.96027
-16.51479 -16.46567 -16.11552 -15.76647 -15.41294 -15.10611 -14.96813 -14.36982
-14.06520 -13.68217 -13.39231 -13.17918 -13.13551 -13.00476 -12.84258 -12.73906
-12.48856 -12.38230 -12.01734 -11.97515 -11.87292 -11.71748 -11.45845 -11.12416
-11.00110 -10.77820 -10.71617 -10.56063 -10.52211 -10.27719 -10.17832 -9.85081
-9.81797 -9.45430 -9.18341 -8.67439 -8.54960 -7.51632 -6.76506 -4.55777
1.47057 1.65347 2.20915 2.42498 2.64271 2.93289 2.96013 3.07875
3.14123 3.48018 3.86574 3.96656 4.19556 4.53625 4.73140 5.02070
5.11260 5.12129 5.17446 5.18642 5.32329 5.35279 5.38329 5.49270
5.53167 5.60398 5.66783 5.73872 5.79176 5.87258 5.92151 6.05633
6.11055 6.18102 6.26273 6.31487 6.40965 6.52050 6.55605 6.59466
6.69967 6.74155 6.87391 7.10752 7.21624 7.25813 7.77790 7.91914
8.06305 8.72379 8.93451 9.67693 10.28511
Molecular weight = 345.16amu
Principal moments of inertia in cm(-1)
A = 0.013901 B = 0.003783 C = 0.003281
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2013.695169 B = 7400.192699 C = 8531.387506
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.035 3.965
2 O -0.361 6.361
3 C 0.469 3.531
4 O -0.511 6.511
5 C -0.127 4.127
6 C 0.138 3.862
7 N -0.437 5.437
8 C -0.355 4.355
9 H 0.114 0.886
10 C 0.076 3.924
11 N -0.851 5.851
12 Si 0.873 3.127
13 H -0.263 1.263
14 H -0.283 1.283
15 H -0.259 1.259
16 C 0.492 3.508
17 N -0.414 5.414
18 N -0.041 5.041
19 N -0.131 5.131
20 N -0.407 5.407
21 C 0.194 3.806
22 H 0.148 0.852
23 C -0.154 4.154
24 C -0.092 4.092
25 C -0.076 4.076
26 C -0.129 4.129
27 C -0.119 4.119
28 C -0.129 4.129
29 C -0.100 4.100
30 H 0.061 0.939
31 H 0.098 0.902
32 H 0.061 0.939
33 H 0.112 0.888
34 H 0.115 0.885
35 H 0.084 0.916
36 H 0.080 0.920
37 H 0.282 0.718
38 H 0.056 0.944
39 H 0.071 0.929
40 H 0.075 0.925
41 H 0.127 0.873
42 H 0.119 0.881
43 H 0.117 0.883
44 H 0.119 0.881
45 H 0.125 0.875
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.054 -2.382 -2.329 3.914
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.059 4.059
2 O -0.278 6.278
3 C 0.312 3.688
4 O -0.399 6.399
5 C -0.166 4.166
6 C 0.015 3.985
7 N -0.147 5.147
8 C -0.482 4.482
9 H 0.131 0.869
10 C -0.135 4.135
11 N -0.484 5.484
12 Si 0.700 3.300
13 H -0.189 1.189
14 H -0.210 1.210
15 H -0.183 1.183
16 C 0.131 3.869
17 N -0.282 5.282
18 N -0.037 5.037
19 N -0.120 5.120
20 N -0.210 5.210
21 C 0.091 3.909
22 H 0.165 0.835
23 C -0.213 4.213
24 C -0.093 4.093
25 C -0.095 4.095
26 C -0.147 4.147
27 C -0.138 4.138
28 C -0.147 4.147
29 C -0.119 4.119
30 H 0.080 0.920
31 H 0.116 0.884
32 H 0.079 0.921
33 H 0.130 0.870
34 H 0.133 0.867
35 H 0.102 0.898
36 H 0.099 0.901
37 H 0.092 0.908
38 H 0.075 0.925
39 H 0.090 0.910
40 H 0.094 0.906
41 H 0.145 0.855
42 H 0.137 0.863
43 H 0.135 0.865
44 H 0.137 0.863
45 H 0.143 0.857
Dipole moment (debyes) X Y Z Total
from point charges 1.857 -2.163 -3.310 4.369
hybrid contribution -0.725 0.885 1.024 1.535
sum 1.132 -1.278 -2.286 2.853
Atomic orbital electron populations
1.23216 0.76940 1.03311 1.02444 1.86531 1.23032 1.33884 1.84345
1.23896 0.92162 0.81090 0.71631 1.90656 1.67377 1.36311 1.45519
1.21870 0.86456 1.01578 1.06714 1.21477 0.80107 0.93575 1.03382
1.41406 1.02992 1.70455 0.99884 1.19160 1.17702 1.20068 0.91283
0.86853 1.25478 0.97001 0.95941 0.95055 1.69676 1.40703 1.34143
1.03889 0.86930 0.81746 0.80994 0.80336 1.18899 1.20992 1.18286
1.22061 0.81976 0.93154 0.89728 1.74662 1.23908 1.34384 0.95235
1.77570 0.94095 1.08944 1.23045 1.82178 1.17579 1.26751 0.85485
1.50892 1.05853 1.57287 1.06975 1.20761 0.85841 0.96268 0.87988
0.83519 1.22220 1.01562 0.96280 1.01199 1.19862 0.97008 0.95026
0.97395 1.21117 0.93622 1.00114 0.94602 1.21103 0.98632 0.94768
1.00217 1.21114 0.99630 0.96240 0.96776 1.21052 0.96643 0.99702
0.97337 1.21138 0.97620 0.93251 0.99856 0.91998 0.88388 0.92065
0.87019 0.86729 0.89825 0.90143 0.90790 0.92537 0.91017 0.90613
0.85489 0.86313 0.86529 0.86270 0.85677
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.38 10.56 101.05 1.07 1.45 16
2 O -0.36 -5.25 10.56 -39.24 -0.41 -5.67 16
3 C 0.47 7.90 7.96 36.01 0.29 8.19 16
4 O -0.51 -9.83 15.73 -18.75 -0.29 -10.13 16
5 C -0.13 -2.16 6.11 -27.88 -0.17 -2.33 16
6 C 0.14 2.78 3.23 -4.04 -0.01 2.77 16
7 N -0.44 -9.33 2.15 -116.59 -0.25 -9.58 16
8 C -0.35 -7.89 7.02 -15.07 -0.11 -8.00 16
9 H 0.11 2.58 5.04 -52.49 -0.26 2.32 16
10 C 0.08 1.76 5.43 -17.46 -0.09 1.67 16
11 N -0.85 -20.50 13.96 55.49 0.77 -19.73 16
12 Si 0.87 19.10 24.78 -169.99 -4.21 14.89 16
13 H -0.26 -5.73 6.74 56.52 0.38 -5.35 16
14 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16
15 H -0.26 -5.90 7.04 56.52 0.40 -5.50 16
16 C 0.49 10.72 8.35 -320.36 -2.67 8.05 16
17 N -0.41 -9.24 11.70 30.10 0.35 -8.89 16
18 N -0.04 -0.90 13.38 60.35 0.81 -0.09 16
19 N -0.13 -2.75 11.72 60.35 0.71 -2.04 16
20 N -0.41 -8.35 3.50 -56.47 -0.20 -8.55 16
21 C 0.19 3.53 2.51 -69.08 -0.17 3.36 16
22 H 0.15 2.96 5.20 -51.93 -0.27 2.69 16
23 C -0.15 -2.49 8.83 37.16 0.33 -2.16 16
24 C -0.09 -1.54 4.89 -104.63 -0.51 -2.06 16
25 C -0.08 -1.19 8.05 -39.58 -0.32 -1.51 16
26 C -0.13 -1.75 10.05 -39.58 -0.40 -2.15 16
27 C -0.12 -1.52 10.05 -39.58 -0.40 -1.92 16
28 C -0.13 -1.75 10.05 -39.58 -0.40 -2.15 16
29 C -0.10 -1.57 9.67 -39.59 -0.38 -1.95 16
30 H 0.06 0.66 8.13 -51.93 -0.42 0.24 16
31 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16
32 H 0.06 0.66 8.13 -51.93 -0.42 0.24 16
33 H 0.11 1.86 8.14 -51.93 -0.42 1.43 16
34 H 0.11 1.84 8.14 -51.93 -0.42 1.42 16
35 H 0.08 1.77 3.77 -51.93 -0.20 1.57 16
36 H 0.08 1.67 7.85 -51.93 -0.41 1.26 16
37 H 0.28 6.45 8.31 -40.82 -0.34 6.11 16
38 H 0.06 0.86 7.37 -51.93 -0.38 0.48 16
39 H 0.07 1.23 6.67 -51.93 -0.35 0.89 16
40 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16
41 H 0.13 2.02 6.82 -52.49 -0.36 1.66 16
42 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16
43 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16
44 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16
45 H 0.13 1.93 7.95 -52.48 -0.42 1.51 16
LS Contribution 373.14 15.07 5.62 5.62
Total: -1.00 -27.49 373.14 -6.67 -34.16
By element:
Atomic # 1 Polarization: 14.37 SS G_CDS: -5.61 Total: 8.76 kcal
Atomic # 6 Polarization: 5.21 SS G_CDS: -3.96 Total: 1.25 kcal
Atomic # 7 Polarization: -51.08 SS G_CDS: 2.19 Total: -48.89 kcal
Atomic # 8 Polarization: -15.09 SS G_CDS: -0.71 Total: -15.80 kcal
Atomic # 14 Polarization: 19.10 SS G_CDS: -4.21 Total: 14.89 kcal
Total LS contribution 5.62 Total: 5.62 kcal
Total: -27.49 -6.67 -34.16 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001351036172.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 110.736 kcal
(2) G-P(sol) polarization free energy of solvation -27.493 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.243 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.668 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.161 kcal
(6) G-S(sol) free energy of system = (1) + (5) 76.575 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.11 seconds