Wall clock time and date at job start Wed Apr 1 2020 03:02:13
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.45199 * 1
3 3 C 1.34222 * 116.99814 * 2 1
4 4 O 1.20824 * 120.00493 * 359.97438 * 3 2 1
5 5 C 1.50709 * 119.99648 * 179.97438 * 3 2 1
6 6 C 1.53000 * 109.46816 * 179.97438 * 5 3 2
7 7 N 1.46506 * 109.46773 * 180.02562 * 6 5 3
8 8 C 1.36924 * 120.00257 * 265.05699 * 7 6 5
9 9 H 1.07997 * 120.00169 * 132.27869 * 8 7 6
10 10 C 1.38803 * 119.99878 * 312.28109 * 8 7 6
11 11 N 1.31562 * 120.00187 * 171.61444 * 10 8 7
12 12 Si 1.86802 * 119.99858 * 351.60892 * 10 8 7
13 13 H 1.48499 * 109.46875 * 91.28488 * 12 10 8
14 14 H 1.48501 * 109.47030 * 211.27936 * 12 10 8
15 15 H 1.48498 * 109.47033 * 331.28009 * 12 10 8
16 16 C 1.38226 * 119.99934 * 85.05612 * 7 6 5
17 17 N 1.31566 * 126.45543 * 353.91744 * 16 7 6
18 18 N 1.28422 * 110.49562 * 179.97438 * 17 16 7
19 19 N 1.28904 * 110.35189 * 359.71417 * 18 17 16
20 20 N 1.35432 * 126.45790 * 173.87482 * 16 7 6
21 21 C 1.46497 * 127.38929 * 0.03141 * 20 16 7
22 22 H 1.09001 * 109.47247 * 333.02348 * 21 20 16
23 23 C 1.53001 * 109.46886 * 93.01398 * 21 20 16
24 24 C 1.50697 * 109.47597 * 213.01451 * 21 20 16
25 25 C 1.38236 * 120.00129 * 299.73134 * 24 21 20
26 26 C 1.38239 * 120.00048 * 179.78502 * 25 24 21
27 27 C 1.38234 * 119.99814 * 0.44434 * 26 25 24
28 28 C 1.38235 * 119.99953 * 359.80846 * 27 26 25
29 29 C 1.38231 * 120.00108 * 359.97438 * 28 27 26
30 30 H 1.09004 * 109.47375 * 59.99936 * 1 2 3
31 31 H 1.09004 * 109.47706 * 180.02562 * 1 2 3
32 32 H 1.09005 * 109.47089 * 300.00087 * 1 2 3
33 33 H 1.09001 * 109.46575 * 60.00360 * 5 3 2
34 34 H 1.08996 * 109.47141 * 299.99939 * 5 3 2
35 35 H 1.09001 * 109.47024 * 60.00917 * 6 5 3
36 36 H 1.08996 * 109.47445 * 300.00035 * 6 5 3
37 37 H 0.97001 * 120.00609 * 179.97438 * 11 10 8
38 38 H 1.09007 * 109.46972 * 60.00058 * 23 21 20
39 39 H 1.08998 * 109.47116 * 300.00320 * 23 21 20
40 40 H 1.08999 * 109.47235 * 180.02562 * 23 21 20
41 41 H 1.08002 * 119.99689 * 359.97438 * 25 24 21
42 42 H 1.07998 * 119.99880 * 180.27020 * 26 25 24
43 43 H 1.08000 * 119.99692 * 179.83340 * 27 26 25
44 44 H 1.08002 * 120.00066 * 180.02562 * 28 27 26
45 45 H 1.08004 * 119.99824 * 180.02562 * 29 28 27
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4520 0.0000 0.0000
3 6 2.0613 1.1959 0.0000
4 8 1.4033 2.2093 -0.0005
5 6 3.5663 1.2748 0.0006
6 6 4.0001 2.7420 -0.0002
7 7 5.4632 2.8186 -0.0002
8 6 6.1416 2.9571 1.1810
9 1 6.9907 2.3245 1.3935
10 6 5.7378 3.9104 2.1056
11 7 6.2799 3.9355 3.3041
12 14 4.4250 5.1580 1.6480
13 1 3.0884 4.6297 2.0215
14 1 4.6754 6.4290 2.3741
15 1 4.4676 5.4073 0.1847
16 6 6.1587 2.7511 -1.1928
17 7 5.6503 2.5082 -2.3817
18 7 6.5724 2.5167 -3.2754
19 7 7.7165 2.7669 -2.7368
20 7 7.4919 2.9234 -1.3578
21 6 8.4859 3.2160 -0.3223
22 1 8.0057 3.7385 0.5051
23 6 9.0937 1.9069 0.1856
24 6 9.5737 4.0837 -0.9008
25 6 10.3303 3.6269 -1.9638
26 6 11.3252 4.4247 -2.4974
27 6 11.5696 5.6755 -1.9621
28 6 10.8165 6.1301 -0.8957
29 6 9.8187 5.3342 -0.3651
30 1 -0.3634 0.5138 -0.8900
31 1 -0.3635 -1.0277 0.0005
32 1 -0.3633 0.5139 0.8900
33 1 3.9563 0.7805 -0.8892
34 1 3.9557 0.7809 0.8908
35 1 3.6101 3.2366 0.8894
36 1 3.6108 3.2356 -0.8906
37 1 5.9980 4.6019 3.9501
38 1 9.5739 1.3843 -0.6418
39 1 8.3069 1.2793 0.6041
40 1 9.8330 2.1245 0.9564
41 1 10.1420 2.6480 -2.3793
42 1 11.9133 4.0695 -3.3307
43 1 12.3487 6.2977 -2.3772
44 1 11.0072 7.1076 -0.4777
45 1 9.2301 5.6896 0.4678
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001351036172.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:02:13
Heat of formation + Delta-G solvation = 64.600634 kcal
Electronic energy + Delta-G solvation = -30986.503746 eV
Core-core repulsion = 26814.229395 eV
Total energy + Delta-G solvation = -4172.274351 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 345.159 amu
Computer time = 1.52 seconds
Orbital eigenvalues (eV)
-43.51014 -41.57176 -40.29250 -39.00070 -37.58197 -36.64945 -34.51016 -33.22347
-32.52471 -31.77462 -31.48544 -30.21505 -28.75591 -27.03058 -25.82513 -25.28665
-23.85534 -23.53621 -22.25518 -21.78330 -21.58304 -19.57432 -18.83371 -18.38421
-17.84742 -17.80176 -17.49854 -17.24650 -16.98164 -16.71395 -16.19388 -15.56570
-15.48584 -15.15821 -14.77548 -14.62823 -14.52880 -14.30927 -14.23139 -14.10151
-13.90605 -13.86352 -13.43901 -13.35039 -13.21635 -13.04259 -12.93761 -12.61583
-12.52037 -12.30173 -11.95579 -11.95040 -11.81938 -11.76863 -11.65489 -11.53668
-11.52373 -11.08511 -10.94880 -9.79457 -9.70208 -9.24232 -8.58654 -6.35815
0.28210 0.51046 0.54792 1.09005 1.11626 1.16906 1.28328 1.34404
1.63737 1.77964 2.07204 2.45804 2.74497 2.94740 3.36770 3.67438
3.81562 3.89628 3.93848 4.04459 4.12205 4.22613 4.26516 4.30807
4.30921 4.32745 4.35917 4.53968 4.54206 4.63109 4.65024 4.69498
4.73201 4.75988 4.87957 5.00684 5.11567 5.13456 5.20372 5.29276
5.40881 5.49488 5.58614 5.63088 5.74344 6.00945 6.12262 6.30983
6.64507 6.92997 7.17354 7.94931 8.49244
Molecular weight = 345.16amu
Principal moments of inertia in cm(-1)
A = 0.013901 B = 0.003783 C = 0.003281
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2013.695169 B = 7400.192699 C = 8531.387506
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.026 3.974
2 O -0.360 6.360
3 C 0.476 3.524
4 O -0.539 6.539
5 C -0.118 4.118
6 C 0.139 3.861
7 N -0.441 5.441
8 C -0.340 4.340
9 H 0.108 0.892
10 C 0.056 3.944
11 N -0.876 5.876
12 Si 0.906 3.094
13 H -0.262 1.262
14 H -0.281 1.281
15 H -0.275 1.275
16 C 0.480 3.520
17 N -0.422 5.422
18 N -0.054 5.054
19 N -0.121 5.121
20 N -0.402 5.402
21 C 0.192 3.808
22 H 0.125 0.875
23 C -0.144 4.144
24 C -0.113 4.113
25 C -0.089 4.089
26 C -0.129 4.129
27 C -0.112 4.112
28 C -0.129 4.129
29 C -0.119 4.119
30 H 0.062 0.938
31 H 0.136 0.864
32 H 0.061 0.939
33 H 0.117 0.883
34 H 0.125 0.875
35 H 0.073 0.927
36 H 0.070 0.930
37 H 0.284 0.716
38 H 0.064 0.936
39 H 0.057 0.943
40 H 0.091 0.909
41 H 0.120 0.880
42 H 0.145 0.855
43 H 0.152 0.848
44 H 0.144 0.856
45 H 0.117 0.883
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.063 -2.479 -3.016 4.962
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.067 4.067
2 O -0.276 6.276
3 C 0.320 3.680
4 O -0.430 6.430
5 C -0.157 4.157
6 C 0.015 3.985
7 N -0.152 5.152
8 C -0.468 4.468
9 H 0.125 0.875
10 C -0.152 4.152
11 N -0.511 5.511
12 Si 0.733 3.267
13 H -0.188 1.188
14 H -0.208 1.208
15 H -0.201 1.201
16 C 0.119 3.881
17 N -0.290 5.290
18 N -0.050 5.050
19 N -0.110 5.110
20 N -0.206 5.206
21 C 0.091 3.909
22 H 0.142 0.858
23 C -0.202 4.202
24 C -0.113 4.113
25 C -0.107 4.107
26 C -0.147 4.147
27 C -0.130 4.130
28 C -0.147 4.147
29 C -0.138 4.138
30 H 0.081 0.919
31 H 0.154 0.846
32 H 0.080 0.920
33 H 0.135 0.865
34 H 0.143 0.857
35 H 0.091 0.909
36 H 0.088 0.912
37 H 0.095 0.905
38 H 0.083 0.917
39 H 0.076 0.924
40 H 0.110 0.890
41 H 0.138 0.862
42 H 0.163 0.837
43 H 0.170 0.830
44 H 0.162 0.838
45 H 0.135 0.865
Dipole moment (debyes) X Y Z Total
from point charges 2.860 -2.281 -3.993 5.415
hybrid contribution -0.990 0.911 1.166 1.780
sum 1.870 -1.370 -2.827 3.656
Atomic orbital electron populations
1.23598 0.74615 1.05890 1.02579 1.86506 1.25224 1.32250 1.83637
1.23703 0.91929 0.81376 0.70983 1.90647 1.67906 1.37363 1.47042
1.21685 0.87140 0.99403 1.07466 1.21405 0.79234 0.95565 1.02273
1.41436 1.03391 1.70888 0.99509 1.19090 1.17243 1.19302 0.91178
0.87456 1.25712 0.97784 0.96603 0.95148 1.69697 1.41859 1.35061
1.04483 0.86443 0.81008 0.80322 0.78909 1.18797 1.20779 1.20052
1.22154 0.82577 0.93577 0.89784 1.74605 1.24326 1.34637 0.95459
1.77554 0.94329 1.09845 1.23254 1.82120 1.17251 1.25891 0.85779
1.51142 1.05920 1.56366 1.07139 1.20797 0.85820 0.97401 0.86885
0.85761 1.22132 1.01300 0.95065 1.01742 1.19798 0.97343 0.95516
0.98674 1.21130 0.94562 1.00342 0.94674 1.21447 0.97875 0.94800
1.00533 1.21536 0.99618 0.96095 0.95782 1.21381 0.95632 1.00357
0.97294 1.21235 0.98813 0.93450 1.00285 0.91897 0.84615 0.91986
0.86493 0.85683 0.90905 0.91170 0.90526 0.91721 0.92391 0.89037
0.86233 0.83694 0.83020 0.83792 0.86483
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.52 10.56 113.37 1.20 1.72 16
2 O -0.36 -9.94 10.56 -51.34 -0.54 -10.49 16
3 C 0.48 15.76 7.96 71.24 0.57 16.33 16
4 O -0.54 -20.70 15.73 21.97 0.35 -20.36 16
5 C -0.12 -3.98 6.11 29.85 0.18 -3.79 16
6 C 0.14 5.63 3.23 86.38 0.28 5.91 16
7 N -0.44 -19.08 2.15 -522.78 -1.13 -20.21 16
8 C -0.34 -15.37 7.02 84.03 0.59 -14.78 16
9 H 0.11 4.98 5.04 -2.91 -0.01 4.96 16
10 C 0.06 2.62 5.43 84.87 0.46 3.08 16
11 N -0.88 -42.60 13.96 21.65 0.30 -42.30 16
12 Si 0.91 39.79 24.78 68.60 1.70 41.49 16
13 H -0.26 -11.39 6.74 99.48 0.67 -10.71 16
14 H -0.28 -12.14 7.11 99.48 0.71 -11.44 16
15 H -0.28 -12.75 7.04 99.48 0.70 -12.05 16
16 C 0.48 21.15 8.35 260.63 2.18 23.33 16
17 N -0.42 -18.94 11.70 -58.67 -0.69 -19.63 16
18 N -0.05 -2.39 13.38 37.02 0.50 -1.89 16
19 N -0.12 -5.07 11.72 37.02 0.43 -4.63 16
20 N -0.40 -16.61 3.50 -332.58 -1.17 -17.78 16
21 C 0.19 7.08 2.51 44.25 0.11 7.19 16
22 H 0.12 5.16 5.20 -2.39 -0.01 5.15 16
23 C -0.14 -4.65 8.83 71.98 0.64 -4.01 16
24 C -0.11 -3.73 4.89 -19.87 -0.10 -3.83 16
25 C -0.09 -2.66 8.05 22.27 0.18 -2.48 16
26 C -0.13 -3.14 10.05 22.27 0.22 -2.91 16
27 C -0.11 -2.48 10.05 22.27 0.22 -2.25 16
28 C -0.13 -3.19 10.05 22.27 0.22 -2.97 16
29 C -0.12 -3.68 9.67 22.27 0.22 -3.46 16
30 H 0.06 1.26 8.13 -2.39 -0.02 1.24 16
31 H 0.14 1.66 8.14 -2.38 -0.02 1.64 16
32 H 0.06 1.24 8.13 -2.38 -0.02 1.22 16
33 H 0.12 3.84 8.14 -2.39 -0.02 3.82 16
34 H 0.13 3.95 8.14 -2.39 -0.02 3.93 16
35 H 0.07 3.12 3.77 -2.39 -0.01 3.11 16
36 H 0.07 2.97 7.85 -2.39 -0.02 2.95 16
37 H 0.28 13.12 8.31 -92.71 -0.77 12.35 16
38 H 0.06 1.95 7.37 -2.38 -0.02 1.93 16
39 H 0.06 2.01 6.67 -2.39 -0.02 1.99 16
40 H 0.09 2.62 8.14 -2.39 -0.02 2.61 16
41 H 0.12 3.71 6.82 -2.91 -0.02 3.69 16
42 H 0.15 2.72 8.06 -2.91 -0.02 2.70 16
43 H 0.15 2.29 8.06 -2.91 -0.02 2.27 16
44 H 0.14 2.78 8.06 -2.91 -0.02 2.76 16
45 H 0.12 3.69 7.95 -2.91 -0.02 3.66 16
Total: -1.00 -58.84 373.14 7.91 -50.93
By element:
Atomic # 1 Polarization: 26.79 SS G_CDS: 0.99 Total: 27.78 kcal
Atomic # 6 Polarization: 9.91 SS G_CDS: 7.17 Total: 17.07 kcal
Atomic # 7 Polarization: -104.69 SS G_CDS: -1.75 Total: -106.44 kcal
Atomic # 8 Polarization: -30.64 SS G_CDS: -0.20 Total: -30.84 kcal
Atomic # 14 Polarization: 39.79 SS G_CDS: 1.70 Total: 41.49 kcal
Total: -58.84 7.91 -50.93 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001351036172.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 115.532 kcal
(2) G-P(sol) polarization free energy of solvation -58.844 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.688 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.913 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.931 kcal
(6) G-S(sol) free energy of system = (1) + (5) 64.601 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.52 seconds