Wall clock time and date at job start Wed Apr 1 2020 03:17:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09008 * 109.46555 * 2 1 4 4 N 1.46495 * 109.47448 * 120.00123 * 2 1 3 5 5 C 1.34779 * 120.00280 * 275.00298 * 4 2 1 6 6 O 1.21589 * 119.99838 * 0.02562 * 5 4 2 7 7 N 1.34772 * 119.99916 * 179.97438 * 5 4 2 8 8 C 1.39942 * 119.99836 * 174.68933 * 7 5 4 9 9 C 1.38863 * 120.07166 * 326.56690 * 8 7 5 10 10 C 1.38116 * 119.93378 * 179.77228 * 9 8 7 11 11 C 1.38275 * 120.06601 * 0.50314 * 10 9 8 12 12 C 1.50700 * 119.93173 * 179.72309 * 11 10 9 13 13 C 1.50699 * 109.47270 * 270.02728 * 12 11 10 14 14 H 1.07996 * 120.00123 * 359.97438 * 13 12 11 15 15 C 1.37879 * 119.99745 * 179.97438 * 13 12 11 16 16 N 1.31516 * 120.00120 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99883 * 179.97438 * 15 13 12 18 18 H 1.48508 * 109.47064 * 89.99748 * 17 15 13 19 19 H 1.48501 * 109.47308 * 209.99793 * 17 15 13 20 20 H 1.48498 * 109.47389 * 329.99968 * 17 15 13 21 21 C 1.38279 * 120.14451 * 359.75115 * 11 10 9 22 22 C 1.38115 * 120.06735 * 359.97438 * 21 11 10 23 23 C 1.50700 * 109.47214 * 240.00731 * 2 1 3 24 24 N 1.30330 * 126.35735 * 285.02199 * 23 2 1 25 25 N 1.28540 * 109.99386 * 179.70795 * 24 23 2 26 26 C 1.31033 * 109.85690 * 0.45273 * 25 24 23 27 27 O 1.35533 * 126.44456 * 179.82620 * 26 25 24 28 28 N 1.36307 * 107.10825 * 359.55758 * 26 25 24 29 29 C 1.46498 * 127.12346 * 180.28490 * 28 26 25 30 30 H 1.09000 * 109.47619 * 299.99528 * 1 2 3 31 31 H 1.09004 * 109.47366 * 59.99847 * 1 2 3 32 32 H 1.09000 * 109.47148 * 179.97438 * 1 2 3 33 33 H 0.97005 * 119.99420 * 95.00087 * 4 2 1 34 34 H 0.97003 * 120.00091 * 354.68620 * 7 5 4 35 35 H 1.08009 * 120.03193 * 359.97438 * 9 8 7 36 36 H 1.07997 * 119.96406 * 180.25333 * 10 9 8 37 37 H 1.09011 * 109.46781 * 30.02682 * 12 11 10 38 38 H 1.08999 * 109.47368 * 150.01839 * 12 11 10 39 39 H 0.97003 * 119.99644 * 179.97438 * 16 15 13 40 40 H 1.07995 * 119.97166 * 179.97438 * 21 11 10 41 41 H 1.08005 * 120.03819 * 179.97438 * 22 21 11 42 42 H 0.96701 * 114.00186 * 269.68490 * 27 26 25 43 43 H 1.08996 * 109.47490 * 89.98006 * 29 28 26 44 44 H 1.09004 * 109.47142 * 209.98021 * 29 28 26 45 45 H 1.08997 * 109.46934 * 329.97627 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1471 -0.0183 2.3571 6 8 1.8574 1.1613 2.4119 7 7 2.5959 -0.6539 3.4576 8 6 2.8353 0.0668 4.6330 9 6 3.2921 1.3764 4.5654 10 6 3.5230 2.0867 5.7273 11 6 3.3097 1.4915 6.9570 12 6 3.5686 2.2672 8.2229 13 6 4.9983 2.0634 8.6534 14 1 5.6538 1.4347 8.0691 15 6 5.4695 2.6796 9.7933 16 7 4.6713 3.4456 10.5045 17 14 7.2415 2.4265 10.3274 18 1 8.0988 3.4693 9.7086 19 1 7.3316 2.5251 11.8064 20 1 7.7029 1.0839 9.8918 21 6 2.8599 0.1858 7.0279 22 6 2.6218 -0.5279 5.8696 23 6 2.0323 -0.7102 -1.2305 24 7 2.0334 -1.9977 -1.4332 25 7 2.5274 -2.2600 -2.5905 26 6 2.8786 -1.1475 -3.1871 27 8 3.4374 -1.0350 -4.4168 28 7 2.5707 -0.1242 -2.3409 29 6 2.7744 1.3077 -2.5740 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 2.2491 -1.6318 1.1524 34 1 2.7529 -1.6108 3.4349 35 1 3.4635 1.8403 3.6052 36 1 3.8743 3.1066 5.6752 37 1 3.3912 3.3274 8.0420 38 1 2.8990 1.9156 9.0078 39 1 5.0027 3.8788 11.3067 40 1 2.6947 -0.2764 7.9898 41 1 2.2709 -1.5478 5.9255 42 1 4.4041 -1.0584 -4.4132 43 1 1.8891 1.7277 -3.0513 44 1 2.9468 1.8099 -1.6221 45 1 3.6391 1.4508 -3.2221 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001426289306.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:17:57 Heat of formation + Delta-G solvation = 44.329470 kcal Electronic energy + Delta-G solvation = -28709.211225 eV Core-core repulsion = 24536.057850 eV Total energy + Delta-G solvation = -4173.153375 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 3.97 seconds Orbital eigenvalues (eV) -43.65930 -40.62248 -38.57786 -38.24836 -36.30094 -35.43083 -34.79964 -33.07212 -31.69224 -30.30108 -30.11729 -29.40665 -28.25947 -26.58025 -24.77562 -23.36072 -22.91189 -22.37776 -21.56912 -20.81404 -20.18106 -19.46609 -18.76573 -17.56248 -17.41666 -16.94191 -16.30710 -16.12070 -15.55707 -15.32626 -15.07186 -14.92203 -14.44946 -14.19973 -14.09486 -13.90861 -13.55244 -13.47284 -13.12120 -13.04282 -12.81572 -12.61319 -12.54800 -12.21480 -12.02490 -11.82478 -11.38028 -11.27008 -10.85977 -10.83995 -10.79037 -10.60578 -10.42572 -10.24090 -9.92133 -9.70950 -9.50566 -9.44321 -9.25266 -8.41115 -8.26738 -7.34781 -6.02396 -4.06330 0.90205 1.44414 1.93757 2.06982 2.10703 2.51696 3.05980 3.13893 3.30814 3.37110 3.41111 3.53620 3.90870 4.02648 4.29042 4.39670 4.43830 4.58677 4.64917 4.74318 4.80914 5.05405 5.21520 5.27524 5.31513 5.41180 5.46226 5.57957 5.73877 5.87009 5.94006 6.00474 6.05746 6.13050 6.22225 6.53085 6.67211 6.68884 6.93171 7.02836 7.19156 7.23037 7.53681 7.73470 7.79545 7.89095 7.93469 8.06316 8.34151 8.40414 8.99068 9.57215 11.07092 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.021278 B = 0.001805 C = 0.001761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.626208 B =15509.022375 C =15900.512269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.258 3.742 3 H 0.107 0.893 4 N -0.737 5.737 5 C 0.707 3.293 6 O -0.571 6.571 7 N -0.678 5.678 8 C 0.123 3.877 9 C -0.117 4.117 10 C -0.107 4.107 11 C -0.044 4.044 12 C 0.048 3.952 13 C -0.510 4.510 14 H 0.057 0.943 15 C 0.057 3.943 16 N -0.894 5.894 17 Si 0.895 3.105 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.273 1.273 21 C -0.107 4.107 22 C -0.144 4.144 23 C 0.179 3.821 24 N -0.265 5.265 25 N -0.279 5.279 26 C 0.350 3.650 27 O -0.435 6.435 28 N -0.478 5.478 29 C 0.068 3.932 30 H 0.081 0.919 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.406 0.594 34 H 0.403 0.597 35 H 0.123 0.877 36 H 0.120 0.880 37 H 0.029 0.971 38 H 0.029 0.971 39 H 0.262 0.738 40 H 0.122 0.878 41 H 0.114 0.886 42 H 0.408 0.592 43 H 0.089 0.911 44 H 0.099 0.901 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.868 -7.371 -28.177 29.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.150 3.850 3 H 0.125 0.875 4 N -0.394 5.394 5 C 0.408 3.592 6 O -0.447 6.447 7 N -0.324 5.324 8 C 0.030 3.970 9 C -0.137 4.137 10 C -0.126 4.126 11 C -0.045 4.045 12 C 0.011 3.989 13 C -0.548 4.548 14 H 0.075 0.925 15 C -0.144 4.144 16 N -0.533 5.533 17 Si 0.723 3.277 18 H -0.206 1.206 19 H -0.212 1.212 20 H -0.198 1.198 21 C -0.126 4.126 22 C -0.165 4.165 23 C -0.089 4.089 24 N -0.108 5.108 25 N -0.130 5.130 26 C 0.046 3.954 27 O -0.234 6.234 28 N -0.181 5.181 29 C -0.075 4.075 30 H 0.100 0.900 31 H 0.085 0.915 32 H 0.089 0.911 33 H 0.241 0.759 34 H 0.238 0.762 35 H 0.141 0.859 36 H 0.138 0.862 37 H 0.047 0.953 38 H 0.047 0.953 39 H 0.071 0.929 40 H 0.140 0.860 41 H 0.132 0.868 42 H 0.266 0.734 43 H 0.108 0.892 44 H 0.117 0.883 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -5.828 -7.573 -28.162 29.739 hybrid contribution 1.998 0.368 -0.123 2.036 sum -3.830 -7.204 -28.285 29.439 Atomic orbital electron populations 1.22216 0.92425 1.03785 1.03495 1.18805 0.94676 0.94851 0.76711 0.87489 1.44986 1.72303 1.14334 1.07808 1.15789 0.78207 0.85146 0.80079 1.90966 1.55723 1.13998 1.84042 1.42434 1.68918 1.11390 1.09704 1.17270 1.02852 0.93050 0.83809 1.20973 1.00149 0.93578 0.98990 1.20978 1.00174 1.00064 0.91401 1.20701 0.92676 0.94174 0.96920 1.18350 0.97155 0.94834 0.88585 1.21069 0.95552 1.29330 1.08883 0.92471 1.25020 0.97740 0.95190 0.96475 1.69961 1.35442 1.31332 1.16568 0.86545 0.84914 0.78620 0.77663 1.20640 1.21201 1.19836 1.20871 1.00071 0.94432 0.97176 1.20720 1.04460 1.00124 0.91152 1.24634 1.02151 0.91277 0.90803 1.74179 1.17053 1.10665 1.08887 1.74646 1.16288 1.20178 1.01906 1.22036 1.02744 0.83915 0.86741 1.84920 1.26886 1.93932 1.17686 1.46611 1.47109 1.09635 1.14709 1.22232 1.04362 0.76014 1.04872 0.89972 0.91485 0.91053 0.75864 0.76199 0.85863 0.86156 0.95312 0.95307 0.92877 0.85996 0.86774 0.73426 0.89239 0.88267 0.88718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.21 9.47 37.16 0.35 -0.86 16 2 C 0.26 2.10 2.98 -69.09 -0.21 1.89 16 3 H 0.11 0.85 6.39 -51.92 -0.33 0.51 16 4 N -0.74 -6.70 5.07 -59.82 -0.30 -7.01 16 5 C 0.71 8.83 8.26 -86.92 -0.72 8.11 16 6 O -0.57 -9.08 13.70 5.29 0.07 -9.01 16 7 N -0.68 -8.28 5.35 -14.22 -0.08 -8.35 16 8 C 0.12 1.97 6.28 -83.69 -0.53 1.45 16 9 C -0.12 -2.10 8.65 -39.39 -0.34 -2.44 16 10 C -0.11 -2.16 9.69 -39.61 -0.38 -2.54 16 11 C -0.04 -0.96 5.07 -104.59 -0.53 -1.49 16 12 C 0.05 1.22 5.10 -29.04 -0.15 1.07 16 13 C -0.51 -14.20 9.09 -34.44 -0.31 -14.51 16 14 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 15 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 16 N -0.89 -26.34 13.29 55.43 0.74 -25.61 16 17 Si 0.89 21.44 29.54 -169.99 -5.02 16.42 16 18 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 19 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 20 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16 21 C -0.11 -2.04 9.69 -39.61 -0.38 -2.42 16 22 C -0.14 -2.31 9.96 -39.39 -0.39 -2.71 16 23 C 0.18 1.54 6.85 -154.11 -1.06 0.48 16 24 N -0.26 -2.88 11.89 32.97 0.39 -2.49 16 25 N -0.28 -3.17 12.22 29.65 0.36 -2.81 16 26 C 0.35 2.93 9.22 -88.76 -0.82 2.11 16 27 O -0.43 -2.39 13.62 -18.29 -0.25 -2.64 16 28 N -0.48 -3.28 3.20 -122.49 -0.39 -3.67 16 29 C 0.07 0.20 11.03 59.85 0.66 0.86 16 30 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.41 3.17 8.38 -40.82 -0.34 2.83 16 34 H 0.40 3.56 8.83 -40.82 -0.36 3.20 16 35 H 0.12 2.17 6.43 -52.48 -0.34 1.83 16 36 H 0.12 2.36 8.06 -52.49 -0.42 1.94 16 37 H 0.03 0.78 8.09 -51.92 -0.42 0.36 16 38 H 0.03 0.77 8.08 -51.93 -0.42 0.35 16 39 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 40 H 0.12 2.23 8.06 -52.49 -0.42 1.81 16 41 H 0.11 1.47 8.06 -52.48 -0.42 1.05 16 42 H 0.41 0.11 9.06 45.56 0.41 0.52 16 43 H 0.09 0.17 8.14 -51.93 -0.42 -0.25 16 44 H 0.10 0.24 7.10 -51.93 -0.37 -0.13 16 45 H 0.09 0.10 8.14 -51.93 -0.42 -0.32 16 LS Contribution 389.30 15.07 5.87 5.87 Total: -1.00 -36.60 389.30 -8.60 -45.20 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: -5.09 Total: 3.59 kcal Atomic # 6 Polarization: -4.59 SS G_CDS: -4.90 Total: -9.49 kcal Atomic # 7 Polarization: -50.66 SS G_CDS: 0.72 Total: -49.94 kcal Atomic # 8 Polarization: -11.47 SS G_CDS: -0.18 Total: -11.65 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -36.60 -8.60 -45.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001426289306.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.532 kcal (2) G-P(sol) polarization free energy of solvation -36.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.203 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.97 seconds