Wall clock time and date at job start Wed Apr 1 2020 03:17:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09008 * 109.46555 * 2 1 4 4 N 1.46495 * 109.47448 * 120.00123 * 2 1 3 5 5 C 1.34779 * 120.00280 * 275.00298 * 4 2 1 6 6 O 1.21589 * 119.99838 * 0.02562 * 5 4 2 7 7 N 1.34772 * 119.99916 * 179.97438 * 5 4 2 8 8 C 1.39942 * 119.99836 * 174.68933 * 7 5 4 9 9 C 1.38863 * 120.07166 * 326.56690 * 8 7 5 10 10 C 1.38116 * 119.93378 * 179.77228 * 9 8 7 11 11 C 1.38275 * 120.06601 * 0.50314 * 10 9 8 12 12 C 1.50700 * 119.93173 * 179.72309 * 11 10 9 13 13 C 1.50699 * 109.47270 * 270.02728 * 12 11 10 14 14 H 1.07996 * 120.00123 * 359.97438 * 13 12 11 15 15 C 1.37879 * 119.99745 * 179.97438 * 13 12 11 16 16 N 1.31516 * 120.00120 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99883 * 179.97438 * 15 13 12 18 18 H 1.48508 * 109.47064 * 89.99748 * 17 15 13 19 19 H 1.48501 * 109.47308 * 209.99793 * 17 15 13 20 20 H 1.48498 * 109.47389 * 329.99968 * 17 15 13 21 21 C 1.38279 * 120.14451 * 359.75115 * 11 10 9 22 22 C 1.38115 * 120.06735 * 359.97438 * 21 11 10 23 23 C 1.50700 * 109.47214 * 240.00731 * 2 1 3 24 24 N 1.30330 * 126.35735 * 285.02199 * 23 2 1 25 25 N 1.28540 * 109.99386 * 179.70795 * 24 23 2 26 26 C 1.31033 * 109.85690 * 0.45273 * 25 24 23 27 27 O 1.35533 * 126.44456 * 179.82620 * 26 25 24 28 28 N 1.36307 * 107.10825 * 359.55758 * 26 25 24 29 29 C 1.46498 * 127.12346 * 180.28490 * 28 26 25 30 30 H 1.09000 * 109.47619 * 299.99528 * 1 2 3 31 31 H 1.09004 * 109.47366 * 59.99847 * 1 2 3 32 32 H 1.09000 * 109.47148 * 179.97438 * 1 2 3 33 33 H 0.97005 * 119.99420 * 95.00087 * 4 2 1 34 34 H 0.97003 * 120.00091 * 354.68620 * 7 5 4 35 35 H 1.08009 * 120.03193 * 359.97438 * 9 8 7 36 36 H 1.07997 * 119.96406 * 180.25333 * 10 9 8 37 37 H 1.09011 * 109.46781 * 30.02682 * 12 11 10 38 38 H 1.08999 * 109.47368 * 150.01839 * 12 11 10 39 39 H 0.97003 * 119.99644 * 179.97438 * 16 15 13 40 40 H 1.07995 * 119.97166 * 179.97438 * 21 11 10 41 41 H 1.08005 * 120.03819 * 179.97438 * 22 21 11 42 42 H 0.96701 * 114.00186 * 269.68490 * 27 26 25 43 43 H 1.08996 * 109.47490 * 89.98006 * 29 28 26 44 44 H 1.09004 * 109.47142 * 209.98021 * 29 28 26 45 45 H 1.08997 * 109.46934 * 329.97627 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1471 -0.0183 2.3571 6 8 1.8574 1.1613 2.4119 7 7 2.5959 -0.6539 3.4576 8 6 2.8353 0.0668 4.6330 9 6 3.2921 1.3764 4.5654 10 6 3.5230 2.0867 5.7273 11 6 3.3097 1.4915 6.9570 12 6 3.5686 2.2672 8.2229 13 6 4.9983 2.0634 8.6534 14 1 5.6538 1.4347 8.0691 15 6 5.4695 2.6796 9.7933 16 7 4.6713 3.4456 10.5045 17 14 7.2415 2.4265 10.3274 18 1 8.0988 3.4693 9.7086 19 1 7.3316 2.5251 11.8064 20 1 7.7029 1.0839 9.8918 21 6 2.8599 0.1858 7.0279 22 6 2.6218 -0.5279 5.8696 23 6 2.0323 -0.7102 -1.2305 24 7 2.0334 -1.9977 -1.4332 25 7 2.5274 -2.2600 -2.5905 26 6 2.8786 -1.1475 -3.1871 27 8 3.4374 -1.0350 -4.4168 28 7 2.5707 -0.1242 -2.3409 29 6 2.7744 1.3077 -2.5740 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 2.2491 -1.6318 1.1524 34 1 2.7529 -1.6108 3.4349 35 1 3.4635 1.8403 3.6052 36 1 3.8743 3.1066 5.6752 37 1 3.3912 3.3274 8.0420 38 1 2.8990 1.9156 9.0078 39 1 5.0027 3.8788 11.3067 40 1 2.6947 -0.2764 7.9898 41 1 2.2709 -1.5478 5.9255 42 1 4.4041 -1.0584 -4.4132 43 1 1.8891 1.7277 -3.0513 44 1 2.9468 1.8099 -1.6221 45 1 3.6391 1.4508 -3.2221 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001426289306.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:17:54 Heat of formation + Delta-G solvation = 16.047636 kcal Electronic energy + Delta-G solvation = -28710.437617 eV Core-core repulsion = 24536.057850 eV Total energy + Delta-G solvation = -4174.379767 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -44.26956 -41.69820 -39.84989 -38.77948 -37.17510 -36.15353 -35.91846 -34.97254 -32.81701 -31.73321 -31.53547 -30.10919 -28.61025 -28.29437 -25.67114 -24.91146 -23.81609 -23.54098 -22.63543 -21.64318 -21.53233 -19.95990 -19.72487 -18.64135 -18.45774 -17.99777 -17.50157 -17.09715 -16.68980 -16.53600 -16.14946 -15.86843 -15.65584 -15.45749 -15.01992 -14.56822 -14.53605 -14.46532 -14.23072 -14.14330 -13.80220 -13.66403 -13.57106 -13.24936 -13.23199 -13.10390 -12.86542 -12.60006 -12.44285 -12.43123 -12.02416 -11.67121 -11.53556 -11.41835 -11.31160 -11.27681 -10.90401 -10.57885 -10.45758 -10.23314 -9.71191 -8.79934 -8.15449 -6.30141 0.33613 0.53469 0.62748 0.92064 1.36707 1.41500 1.42450 1.53965 1.67898 2.02401 2.42158 2.63365 2.99664 3.06350 3.10059 3.13395 3.59782 3.75282 4.01949 4.09876 4.17583 4.20334 4.28963 4.43103 4.50759 4.59536 4.63606 4.68562 4.70118 4.75217 4.78061 4.81643 5.14991 5.18064 5.27808 5.32611 5.36740 5.42017 5.46081 5.53158 5.66116 5.79102 5.90561 6.13597 6.16423 6.30098 6.36403 6.82778 6.89559 7.38008 7.39677 7.44284 8.92097 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.021278 B = 0.001805 C = 0.001761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.626208 B =15509.022375 C =15900.512269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.260 3.740 3 H 0.113 0.887 4 N -0.720 5.720 5 C 0.709 3.291 6 O -0.604 6.604 7 N -0.667 5.667 8 C 0.141 3.859 9 C -0.120 4.120 10 C -0.118 4.118 11 C -0.078 4.078 12 C 0.057 3.943 13 C -0.525 4.525 14 H 0.056 0.944 15 C 0.002 3.998 16 N -0.931 5.931 17 Si 0.966 3.034 18 H -0.273 1.273 19 H -0.280 1.280 20 H -0.264 1.264 21 C -0.113 4.113 22 C -0.130 4.130 23 C 0.180 3.820 24 N -0.290 5.290 25 N -0.324 5.324 26 C 0.359 3.641 27 O -0.435 6.435 28 N -0.472 5.472 29 C 0.058 3.942 30 H 0.069 0.931 31 H 0.082 0.918 32 H 0.067 0.933 33 H 0.415 0.585 34 H 0.423 0.577 35 H 0.128 0.872 36 H 0.111 0.889 37 H 0.000 1.000 38 H 0.006 0.994 39 H 0.265 0.735 40 H 0.124 0.876 41 H 0.157 0.843 42 H 0.431 0.569 43 H 0.102 0.898 44 H 0.105 0.895 45 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.069 -8.778 -30.327 31.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.152 3.848 3 H 0.130 0.870 4 N -0.378 5.378 5 C 0.410 3.590 6 O -0.483 6.483 7 N -0.316 5.316 8 C 0.046 3.954 9 C -0.141 4.141 10 C -0.137 4.137 11 C -0.078 4.078 12 C 0.020 3.980 13 C -0.563 4.563 14 H 0.074 0.926 15 C -0.196 4.196 16 N -0.571 5.571 17 Si 0.790 3.210 18 H -0.199 1.199 19 H -0.206 1.206 20 H -0.188 1.188 21 C -0.131 4.131 22 C -0.150 4.150 23 C -0.089 4.089 24 N -0.133 5.133 25 N -0.175 5.175 26 C 0.054 3.946 27 O -0.238 6.238 28 N -0.174 5.174 29 C -0.083 4.083 30 H 0.088 0.912 31 H 0.101 0.899 32 H 0.086 0.914 33 H 0.252 0.748 34 H 0.262 0.738 35 H 0.146 0.854 36 H 0.129 0.871 37 H 0.018 0.982 38 H 0.024 0.976 39 H 0.073 0.927 40 H 0.142 0.858 41 H 0.174 0.826 42 H 0.293 0.707 43 H 0.120 0.880 44 H 0.124 0.876 45 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -5.009 -9.022 -30.372 32.077 hybrid contribution 1.698 0.802 0.346 1.909 sum -3.311 -8.220 -30.025 31.305 Atomic orbital electron populations 1.22152 0.91912 1.03617 1.03659 1.18883 0.94986 0.94862 0.76067 0.86957 1.44847 1.71207 1.14621 1.07085 1.15839 0.77866 0.84716 0.80620 1.90957 1.57134 1.15615 1.84600 1.42255 1.68588 1.12216 1.08511 1.17306 1.00429 0.92390 0.85263 1.20997 1.00376 0.94562 0.98129 1.20906 1.00982 1.00045 0.91774 1.20389 0.96405 0.95520 0.95528 1.18092 0.96021 0.93706 0.90214 1.21393 0.96605 1.29215 1.09094 0.92590 1.25950 1.02405 0.94765 0.96501 1.70090 1.37621 1.32287 1.17094 0.85435 0.79252 0.78958 0.77342 1.19874 1.20565 1.18840 1.20947 0.99947 0.93532 0.98706 1.20991 1.02738 1.01569 0.89735 1.24558 1.02153 0.90911 0.91304 1.74078 1.17996 1.11917 1.09277 1.74541 1.18202 1.22058 1.02694 1.22044 1.01780 0.83754 0.87052 1.84890 1.28987 1.93757 1.16195 1.46757 1.46096 1.10805 1.13751 1.22589 1.05995 0.73774 1.05915 0.91222 0.89884 0.91353 0.74831 0.73835 0.85445 0.87117 0.98206 0.97597 0.92651 0.85760 0.82563 0.70704 0.87956 0.87624 0.86576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 9.47 71.98 0.68 -1.41 16 2 C 0.26 3.74 2.98 44.24 0.13 3.87 16 3 H 0.11 1.55 6.39 -2.38 -0.02 1.53 16 4 N -0.72 -11.56 5.07 -461.42 -2.34 -13.90 16 5 C 0.71 16.13 8.26 179.06 1.48 17.61 16 6 O -0.60 -18.29 13.70 -4.00 -0.05 -18.34 16 7 N -0.67 -14.33 5.35 -317.18 -1.70 -16.02 16 8 C 0.14 4.20 6.28 38.15 0.24 4.44 16 9 C -0.12 -4.25 8.65 22.39 0.19 -4.06 16 10 C -0.12 -4.88 9.69 22.25 0.22 -4.67 16 11 C -0.08 -3.48 5.07 -19.85 -0.10 -3.58 16 12 C 0.06 3.07 5.10 29.10 0.15 3.22 16 13 C -0.53 -30.12 9.09 25.60 0.23 -29.89 16 14 H 0.06 3.15 7.74 -2.91 -0.02 3.12 16 15 C 0.00 0.10 5.46 84.65 0.46 0.56 16 16 N -0.93 -56.46 13.29 21.45 0.28 -56.17 16 17 Si 0.97 44.34 29.54 68.60 2.03 46.37 16 18 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 19 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 20 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 21 C -0.11 -4.25 9.69 22.25 0.22 -4.04 16 22 C -0.13 -3.84 9.96 22.39 0.22 -3.62 16 23 C 0.18 2.77 6.85 137.67 0.94 3.72 16 24 N -0.29 -5.99 11.89 -49.60 -0.59 -6.58 16 25 N -0.32 -7.04 12.22 -173.68 -2.12 -9.17 16 26 C 0.36 5.38 9.22 179.70 1.66 7.04 16 27 O -0.44 -3.80 13.62 -88.38 -1.20 -5.01 16 28 N -0.47 -5.47 3.20 -652.25 -2.09 -7.56 16 29 C 0.06 0.18 11.03 127.77 1.41 1.59 16 30 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.41 5.51 8.38 -92.70 -0.78 4.73 16 34 H 0.42 5.87 8.83 -92.71 -0.82 5.05 16 35 H 0.13 4.40 6.43 -2.91 -0.02 4.38 16 36 H 0.11 4.61 8.06 -2.91 -0.02 4.59 16 37 H 0.00 -0.02 8.09 -2.38 -0.02 -0.04 16 38 H 0.01 0.33 8.08 -2.39 -0.02 0.31 16 39 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 40 H 0.12 4.54 8.06 -2.91 -0.02 4.51 16 41 H 0.16 3.31 8.06 -2.91 -0.02 3.28 16 42 H 0.43 -0.87 9.06 -74.06 -0.67 -1.54 16 43 H 0.10 0.10 8.14 -2.39 -0.02 0.08 16 44 H 0.11 0.23 7.10 -2.38 -0.02 0.22 16 45 H 0.12 -0.12 8.14 -2.39 -0.02 -0.14 16 Total: -1.00 -81.66 389.30 -0.85 -82.51 By element: Atomic # 1 Polarization: 14.29 SS G_CDS: -1.20 Total: 13.09 kcal Atomic # 6 Polarization: -17.36 SS G_CDS: 8.13 Total: -9.22 kcal Atomic # 7 Polarization: -100.85 SS G_CDS: -8.55 Total: -109.40 kcal Atomic # 8 Polarization: -22.09 SS G_CDS: -1.26 Total: -23.35 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal Total: -81.66 -0.85 -82.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001426289306.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.562 kcal (2) G-P(sol) polarization free energy of solvation -81.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.514 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds