Wall clock time and date at job start Wed Apr 1 2020 04:45:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08990 * 109.47173 * 2 1 4 4 C 1.52997 * 109.47053 * 239.99634 * 2 1 3 5 5 N 1.46900 * 109.47036 * 184.99759 * 4 2 1 6 6 C 1.46901 * 111.00126 * 180.02562 * 5 4 2 7 7 C 1.50699 * 109.47387 * 180.02562 * 6 5 4 8 8 O 1.21290 * 119.99825 * 359.97438 * 7 6 5 9 9 N 1.34774 * 120.00232 * 179.97438 * 7 6 5 10 10 C 1.37098 * 120.00013 * 179.97438 * 9 7 6 11 11 H 1.07999 * 120.00334 * 359.97438 * 10 9 7 12 12 C 1.38950 * 120.00007 * 180.02562 * 10 9 7 13 13 N 1.31415 * 119.99796 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 120.00228 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47018 * 59.99321 * 14 12 10 16 16 H 1.48499 * 109.47127 * 179.97438 * 14 12 10 17 17 H 1.48504 * 109.46737 * 299.99754 * 14 12 10 18 18 N 1.46499 * 109.46843 * 120.00201 * 2 1 3 19 19 C 1.34784 * 119.99893 * 274.99901 * 18 2 1 20 20 O 1.21763 * 119.99885 * 359.97438 * 19 18 2 21 21 C 1.46296 * 119.99696 * 179.72966 * 19 18 2 22 22 N 1.32502 * 125.56871 * 359.68694 * 21 19 18 23 23 C 1.32024 * 109.86576 * 179.88441 * 22 21 19 24 24 C 1.39361 * 107.93858 * 0.38187 * 23 22 21 25 25 C 1.40415 * 133.42263 * 179.77072 * 24 23 22 26 26 C 1.36324 * 119.19083 * 179.97438 * 25 24 23 27 27 C 1.40329 * 119.59081 * 0.02562 * 26 25 24 28 28 C 1.35170 * 120.39198 * 359.97438 * 27 26 25 29 29 N 1.36182 * 120.59988 * 0.03372 * 28 27 26 30 30 H 1.09007 * 109.47248 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47450 * 300.00199 * 1 2 3 32 32 H 1.08998 * 109.47317 * 60.00174 * 1 2 3 33 33 H 1.08994 * 109.47777 * 305.00037 * 4 2 1 34 34 H 1.09004 * 109.47370 * 65.00532 * 4 2 1 35 35 H 1.00902 * 110.99688 * 56.05668 * 5 4 2 36 36 H 1.09008 * 109.46840 * 300.00213 * 6 5 4 37 37 H 1.08996 * 109.47577 * 60.00258 * 6 5 4 38 38 H 0.97000 * 119.99875 * 0.02562 * 9 7 6 39 39 H 0.97002 * 119.99561 * 180.02562 * 13 12 10 40 40 H 0.97005 * 120.00261 * 95.00113 * 18 2 1 41 41 H 1.08004 * 126.03417 * 180.14773 * 23 22 21 42 42 H 1.07997 * 120.40359 * 0.02562 * 25 24 23 43 43 H 1.08001 * 120.20670 * 179.97438 * 26 25 24 44 44 H 1.08001 * 119.80331 * 179.97438 * 27 26 25 45 45 H 1.07999 * 119.69567 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5040 -0.8267 -1.1904 6 6 4.0304 -1.5149 -2.3766 7 6 5.5316 -1.6045 -2.2807 8 8 6.1066 -1.1402 -1.3189 9 7 6.2354 -2.2004 -3.2635 10 6 7.6012 -2.2814 -3.1764 11 1 8.1133 -1.8673 -2.3204 12 6 8.3269 -2.8954 -4.1899 13 7 7.7038 -3.3989 -5.2317 14 14 10.1878 -3.0064 -4.0709 15 1 10.5613 -3.7664 -2.8511 16 1 10.7198 -3.7027 -5.2698 17 1 10.7615 -1.6386 -3.9969 18 7 2.0182 -0.6907 1.1962 19 6 2.1469 -0.0183 2.3572 20 8 1.8578 1.1633 2.4117 21 6 2.6289 -0.7095 3.5531 22 7 2.9634 -1.9897 3.6212 23 6 3.3578 -2.2859 4.8459 24 6 3.2649 -1.1296 5.6182 25 6 3.5389 -0.8441 6.9654 26 6 3.3401 0.4218 7.4305 27 6 2.8663 1.4140 6.5586 28 6 2.6080 1.1207 5.2647 29 7 2.8022 -0.1399 4.7875 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 1.6054 -1.7198 -1.2951 34 1 1.7517 -0.1584 -2.1370 35 1 3.7995 -1.2885 -0.3433 36 1 3.6095 -2.5190 -2.4307 37 1 3.7559 -0.9572 -3.2720 38 1 5.7756 -2.5714 -4.0328 39 1 8.2104 -3.8278 -5.9390 40 1 2.2490 -1.6319 1.1526 41 1 3.6899 -3.2544 5.1897 42 1 3.9035 -1.6178 7.6248 43 1 3.5451 0.6595 8.4639 44 1 2.7072 2.4180 6.9236 45 1 2.2441 1.8931 4.6033 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483149384.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:45:15 Heat of formation + Delta-G solvation = 19.383528 kcal Electronic energy + Delta-G solvation = -28997.627195 eV Core-core repulsion = 24823.392083 eV Total energy + Delta-G solvation = -4174.235112 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.14907 -39.76966 -38.26756 -37.79784 -36.71975 -34.30173 -33.74464 -33.52964 -31.74402 -31.18229 -30.87017 -28.53598 -27.57902 -25.08776 -24.52131 -24.01106 -23.18401 -22.51605 -21.42575 -20.54367 -19.26842 -18.50050 -17.83521 -17.26363 -16.82754 -16.47948 -16.26567 -16.09619 -15.75017 -15.33253 -15.05999 -14.85543 -14.54270 -14.38151 -14.27363 -13.87020 -13.82990 -13.49310 -13.05725 -12.71253 -12.63703 -12.52954 -12.29131 -12.15661 -11.92633 -11.72651 -11.58024 -11.44419 -11.12897 -11.05087 -10.95760 -10.70119 -10.41900 -10.30990 -10.18504 -9.69993 -9.47118 -9.25423 -8.43650 -8.05299 -7.92915 -7.83559 -6.38830 -3.79431 0.41742 0.54539 2.00327 2.09047 3.03650 3.13506 3.22498 3.27643 3.29711 3.32503 3.94025 4.04426 4.10549 4.12997 4.30255 4.37322 4.47893 4.53085 4.65485 4.82422 5.03357 5.07590 5.18568 5.23071 5.27920 5.29518 5.42854 5.45696 5.56155 5.60188 5.64277 5.77364 5.80577 5.90862 5.99665 6.06146 6.12821 6.20120 6.29183 6.36647 6.66950 7.17516 7.20125 7.51708 7.57966 7.63812 8.01758 8.09190 8.64645 9.20959 9.57366 10.09318 10.78911 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.011539 B = 0.002301 C = 0.002013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2425.875200 B =12167.527644 C =13904.471940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.146 3.854 3 H 0.101 0.899 4 C 0.050 3.950 5 N -0.669 5.669 6 C 0.050 3.950 7 C 0.440 3.560 8 O -0.581 6.581 9 N -0.564 5.564 10 C -0.299 4.299 11 H 0.102 0.898 12 C 0.022 3.978 13 N -0.903 5.903 14 Si 0.931 3.069 15 H -0.274 1.274 16 H -0.284 1.284 17 H -0.274 1.274 18 N -0.697 5.697 19 C 0.617 3.383 20 O -0.548 6.548 21 C 0.084 3.916 22 N -0.401 5.401 23 C -0.009 4.009 24 C 0.020 3.980 25 C -0.080 4.080 26 C -0.112 4.112 27 C -0.135 4.135 28 C 0.065 3.935 29 N -0.320 5.320 30 H 0.058 0.942 31 H 0.062 0.938 32 H 0.070 0.930 33 H 0.034 0.966 34 H 0.089 0.911 35 H 0.350 0.650 36 H 0.044 0.956 37 H 0.087 0.913 38 H 0.392 0.608 39 H 0.272 0.728 40 H 0.409 0.591 41 H 0.190 0.810 42 H 0.152 0.848 43 H 0.141 0.859 44 H 0.153 0.847 45 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.230 4.426 20.984 26.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.042 3.958 3 H 0.119 0.881 4 C -0.080 4.080 5 N -0.302 5.302 6 C -0.082 4.082 7 C 0.226 3.774 8 O -0.465 6.465 9 N -0.201 5.201 10 C -0.428 4.428 11 H 0.120 0.880 12 C -0.180 4.180 13 N -0.544 5.544 14 Si 0.758 3.242 15 H -0.199 1.199 16 H -0.210 1.210 17 H -0.199 1.199 18 N -0.348 5.348 19 C 0.403 3.597 20 O -0.426 6.426 21 C -0.164 4.164 22 N -0.117 5.117 23 C -0.171 4.171 24 C -0.092 4.092 25 C -0.100 4.100 26 C -0.134 4.134 27 C -0.156 4.156 28 C -0.058 4.058 29 N 0.012 4.988 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.089 0.911 33 H 0.052 0.948 34 H 0.108 0.892 35 H 0.170 0.830 36 H 0.062 0.938 37 H 0.106 0.894 38 H 0.225 0.775 39 H 0.081 0.919 40 H 0.245 0.755 41 H 0.207 0.793 42 H 0.169 0.831 43 H 0.159 0.841 44 H 0.171 0.829 45 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -15.988 5.685 20.303 26.461 hybrid contribution 0.651 -1.195 0.340 1.403 sum -15.338 4.490 20.643 26.106 Atomic orbital electron populations 1.22159 0.94757 1.02314 1.02809 1.21133 0.93581 0.98511 0.82610 0.88138 1.22307 0.89016 0.99128 0.97532 1.60033 1.07369 1.57637 1.05158 1.21687 0.95149 0.97010 0.94384 1.19809 0.88096 0.84242 0.85290 1.90536 1.71116 1.51423 1.33458 1.41847 1.07386 1.50959 1.19882 1.19652 0.81550 1.35094 1.06526 0.88023 1.25256 1.00661 0.96821 0.95220 1.69608 1.36748 1.38650 1.09397 0.85920 0.82182 0.78595 0.77536 1.19921 1.20981 1.19902 1.45612 1.66002 1.14537 1.08631 1.16001 0.77209 0.85240 0.81280 1.90815 1.52084 1.14787 1.84925 1.22312 1.17646 0.89768 0.86693 1.69912 1.10379 1.09919 1.21449 1.22741 1.08170 0.97892 0.88324 1.20048 1.05976 0.90411 0.92728 1.20582 0.99809 0.98070 0.91569 1.21190 0.98960 0.92539 1.00666 1.20994 1.01388 1.01374 0.91844 1.22098 1.01152 0.85623 0.96907 1.42385 1.38518 1.08506 1.09404 0.92335 0.91925 0.91119 0.94752 0.89224 0.83004 0.93764 0.89447 0.77461 0.91857 0.75493 0.79313 0.83058 0.84105 0.82949 0.80416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.54 9.48 37.16 0.35 -1.19 16 2 C 0.15 1.74 2.88 -67.93 -0.20 1.54 16 3 H 0.10 1.40 7.57 -51.93 -0.39 1.01 16 4 C 0.05 0.61 5.30 -3.83 -0.02 0.59 16 5 N -0.67 -11.13 6.12 -115.06 -0.70 -11.84 16 6 C 0.05 0.90 6.17 -4.98 -0.03 0.87 16 7 C 0.44 10.68 7.82 -10.99 -0.09 10.60 16 8 O -0.58 -16.37 15.78 5.55 0.09 -16.28 16 9 N -0.56 -14.57 5.29 -10.96 -0.06 -14.63 16 10 C -0.30 -8.50 9.68 -14.93 -0.14 -8.64 16 11 H 0.10 3.04 7.16 -52.49 -0.38 2.66 16 12 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 13 N -0.90 -24.84 13.05 55.50 0.72 -24.11 16 14 Si 0.93 21.42 29.55 -169.99 -5.02 16.40 16 15 H -0.27 -6.26 7.11 56.52 0.40 -5.85 16 16 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 17 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 18 N -0.70 -9.00 4.35 -55.23 -0.24 -9.24 16 19 C 0.62 9.06 7.74 -13.02 -0.10 8.96 16 20 O -0.55 -8.83 14.99 5.13 0.08 -8.75 16 21 C 0.08 1.20 7.82 -153.91 -1.20 0.00 16 22 N -0.40 -5.53 10.79 -10.62 -0.11 -5.64 16 23 C -0.01 -0.10 12.00 -17.05 -0.20 -0.31 16 24 C 0.02 0.22 6.80 -84.21 -0.57 -0.35 16 25 C -0.08 -0.59 10.11 -39.45 -0.40 -0.98 16 26 C -0.11 -0.69 10.08 -39.49 -0.40 -1.09 16 27 C -0.14 -0.95 9.98 -39.89 -0.40 -1.35 16 28 C 0.06 0.66 10.52 -16.71 -0.18 0.48 16 29 N -0.32 -3.97 2.95 -58.89 -0.17 -4.15 16 30 H 0.06 0.51 8.14 -51.92 -0.42 0.08 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.03 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.35 6.21 7.28 -39.29 -0.29 5.92 16 36 H 0.04 0.71 8.14 -51.92 -0.42 0.28 16 37 H 0.09 1.43 8.14 -51.93 -0.42 1.00 16 38 H 0.39 9.63 7.90 -40.82 -0.32 9.30 16 39 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 40 H 0.41 5.05 7.79 -40.82 -0.32 4.73 16 41 H 0.19 1.47 8.06 -52.48 -0.42 1.05 16 42 H 0.15 0.63 8.06 -52.49 -0.42 0.21 16 43 H 0.14 0.44 8.06 -52.49 -0.42 0.02 16 44 H 0.15 0.60 8.06 -52.49 -0.42 0.18 16 45 H 0.18 1.81 6.77 -52.49 -0.36 1.45 16 LS Contribution 388.06 15.07 5.85 5.85 Total: -1.00 -35.84 388.06 -9.09 -44.92 By element: Atomic # 1 Polarization: 23.68 SS G_CDS: -5.84 Total: 17.85 kcal Atomic # 6 Polarization: 13.30 SS G_CDS: -3.67 Total: 9.63 kcal Atomic # 7 Polarization: -69.04 SS G_CDS: -0.57 Total: -69.61 kcal Atomic # 8 Polarization: -25.20 SS G_CDS: 0.16 Total: -25.03 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -35.84 -9.09 -44.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483149384.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.308 kcal (2) G-P(sol) polarization free energy of solvation -35.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.925 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds