Wall clock time and date at job start Wed Apr 1 2020 04:45:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08990 * 109.47173 * 2 1 4 4 C 1.52997 * 109.47053 * 239.99634 * 2 1 3 5 5 N 1.46900 * 109.47036 * 184.99759 * 4 2 1 6 6 C 1.46901 * 111.00126 * 180.02562 * 5 4 2 7 7 C 1.50699 * 109.47387 * 180.02562 * 6 5 4 8 8 O 1.21290 * 119.99825 * 359.97438 * 7 6 5 9 9 N 1.34774 * 120.00232 * 179.97438 * 7 6 5 10 10 C 1.37098 * 120.00013 * 179.97438 * 9 7 6 11 11 H 1.07999 * 120.00334 * 359.97438 * 10 9 7 12 12 C 1.38950 * 120.00007 * 180.02562 * 10 9 7 13 13 N 1.31415 * 119.99796 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 120.00228 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47018 * 59.99321 * 14 12 10 16 16 H 1.48499 * 109.47127 * 179.97438 * 14 12 10 17 17 H 1.48504 * 109.46737 * 299.99754 * 14 12 10 18 18 N 1.46499 * 109.46843 * 120.00201 * 2 1 3 19 19 C 1.34784 * 119.99893 * 274.99901 * 18 2 1 20 20 O 1.21763 * 119.99885 * 359.97438 * 19 18 2 21 21 C 1.46296 * 119.99696 * 179.72966 * 19 18 2 22 22 N 1.32502 * 125.56871 * 359.68694 * 21 19 18 23 23 C 1.32024 * 109.86576 * 179.88441 * 22 21 19 24 24 C 1.39361 * 107.93858 * 0.38187 * 23 22 21 25 25 C 1.40415 * 133.42263 * 179.77072 * 24 23 22 26 26 C 1.36324 * 119.19083 * 179.97438 * 25 24 23 27 27 C 1.40329 * 119.59081 * 0.02562 * 26 25 24 28 28 C 1.35170 * 120.39198 * 359.97438 * 27 26 25 29 29 N 1.36182 * 120.59988 * 0.03372 * 28 27 26 30 30 H 1.09007 * 109.47248 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47450 * 300.00199 * 1 2 3 32 32 H 1.08998 * 109.47317 * 60.00174 * 1 2 3 33 33 H 1.08994 * 109.47777 * 305.00037 * 4 2 1 34 34 H 1.09004 * 109.47370 * 65.00532 * 4 2 1 35 35 H 1.00902 * 110.99688 * 56.05668 * 5 4 2 36 36 H 1.09008 * 109.46840 * 300.00213 * 6 5 4 37 37 H 1.08996 * 109.47577 * 60.00258 * 6 5 4 38 38 H 0.97000 * 119.99875 * 0.02562 * 9 7 6 39 39 H 0.97002 * 119.99561 * 180.02562 * 13 12 10 40 40 H 0.97005 * 120.00261 * 95.00113 * 18 2 1 41 41 H 1.08004 * 126.03417 * 180.14773 * 23 22 21 42 42 H 1.07997 * 120.40359 * 0.02562 * 25 24 23 43 43 H 1.08001 * 120.20670 * 179.97438 * 26 25 24 44 44 H 1.08001 * 119.80331 * 179.97438 * 27 26 25 45 45 H 1.07999 * 119.69567 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5040 -0.8267 -1.1904 6 6 4.0304 -1.5149 -2.3766 7 6 5.5316 -1.6045 -2.2807 8 8 6.1066 -1.1402 -1.3189 9 7 6.2354 -2.2004 -3.2635 10 6 7.6012 -2.2814 -3.1764 11 1 8.1133 -1.8673 -2.3204 12 6 8.3269 -2.8954 -4.1899 13 7 7.7038 -3.3989 -5.2317 14 14 10.1878 -3.0064 -4.0709 15 1 10.5613 -3.7664 -2.8511 16 1 10.7198 -3.7027 -5.2698 17 1 10.7615 -1.6386 -3.9969 18 7 2.0182 -0.6907 1.1962 19 6 2.1469 -0.0183 2.3572 20 8 1.8578 1.1633 2.4117 21 6 2.6289 -0.7095 3.5531 22 7 2.9634 -1.9897 3.6212 23 6 3.3578 -2.2859 4.8459 24 6 3.2649 -1.1296 5.6182 25 6 3.5389 -0.8441 6.9654 26 6 3.3401 0.4218 7.4305 27 6 2.8663 1.4140 6.5586 28 6 2.6080 1.1207 5.2647 29 7 2.8022 -0.1399 4.7875 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 1.6054 -1.7198 -1.2951 34 1 1.7517 -0.1584 -2.1370 35 1 3.7995 -1.2885 -0.3433 36 1 3.6095 -2.5190 -2.4307 37 1 3.7559 -0.9572 -3.2720 38 1 5.7756 -2.5714 -4.0328 39 1 8.2104 -3.8278 -5.9390 40 1 2.2490 -1.6319 1.1526 41 1 3.6899 -3.2544 5.1897 42 1 3.9035 -1.6178 7.6248 43 1 3.5451 0.6595 8.4639 44 1 2.7072 2.4180 6.9236 45 1 2.2441 1.8931 4.6033 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001483149384.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:45:12 Heat of formation + Delta-G solvation = -7.720207 kcal Electronic energy + Delta-G solvation = -28998.802501 eV Core-core repulsion = 24823.392083 eV Total energy + Delta-G solvation = -4175.410418 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 2.87 seconds Orbital eigenvalues (eV) -43.95153 -40.82009 -40.12540 -38.52740 -37.91260 -36.05891 -35.18220 -34.37610 -33.28072 -32.63433 -31.71347 -29.33068 -28.99278 -26.73852 -25.42731 -24.82491 -24.52040 -23.29309 -22.35127 -21.54678 -21.10685 -19.94679 -19.39302 -18.07883 -17.89996 -17.54767 -17.35239 -17.09801 -16.89211 -16.45467 -16.36592 -16.11979 -15.78395 -15.65679 -15.47568 -15.26566 -15.07460 -14.68601 -14.35953 -14.08104 -13.58925 -13.42203 -13.24747 -13.11182 -13.10462 -13.04282 -12.82075 -12.77445 -12.67607 -12.44685 -12.13262 -11.99876 -11.81343 -11.59293 -11.52126 -11.36271 -10.47358 -10.40144 -10.23786 -10.02957 -9.36028 -8.60650 -8.47663 -5.96508 -0.26063 -0.21282 1.17945 1.21629 1.38604 1.40208 1.51424 2.04000 2.20559 2.28308 2.29224 2.41740 2.86598 3.19304 3.22657 3.42047 3.48150 3.68234 3.73679 3.82476 3.93119 4.13954 4.16290 4.23580 4.32839 4.37549 4.49099 4.56775 4.65361 4.69085 4.71213 4.75152 4.81183 5.00349 5.05331 5.18635 5.23933 5.36065 5.39299 5.43521 5.56020 5.84805 5.88566 6.07189 6.21510 6.29629 6.59303 6.61033 6.99168 7.11452 7.54768 8.10994 8.69449 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.011539 B = 0.002301 C = 0.002013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2425.875200 B =12167.527644 C =13904.471940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.147 3.853 3 H 0.074 0.926 4 C 0.056 3.944 5 N -0.689 5.689 6 C 0.065 3.935 7 C 0.434 3.566 8 O -0.627 6.627 9 N -0.571 5.571 10 C -0.336 4.336 11 H 0.076 0.924 12 C -0.012 4.012 13 N -0.918 5.918 14 Si 0.992 3.008 15 H -0.272 1.272 16 H -0.268 1.268 17 H -0.273 1.273 18 N -0.693 5.693 19 C 0.610 3.390 20 O -0.577 6.577 21 C 0.030 3.970 22 N -0.422 5.422 23 C -0.025 4.025 24 C 0.016 3.984 25 C -0.082 4.082 26 C -0.101 4.101 27 C -0.109 4.109 28 C 0.020 3.980 29 N -0.322 5.322 30 H 0.071 0.929 31 H 0.047 0.953 32 H 0.091 0.909 33 H 0.058 0.942 34 H 0.108 0.892 35 H 0.340 0.660 36 H 0.072 0.928 37 H 0.110 0.890 38 H 0.398 0.602 39 H 0.278 0.722 40 H 0.411 0.589 41 H 0.218 0.782 42 H 0.188 0.812 43 H 0.185 0.815 44 H 0.188 0.812 45 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.506 4.002 22.656 28.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.043 3.957 3 H 0.093 0.907 4 C -0.073 4.073 5 N -0.322 5.322 6 C -0.067 4.067 7 C 0.222 3.778 8 O -0.514 6.514 9 N -0.209 5.209 10 C -0.465 4.465 11 H 0.094 0.906 12 C -0.212 4.212 13 N -0.559 5.559 14 Si 0.816 3.184 15 H -0.197 1.197 16 H -0.192 1.192 17 H -0.199 1.199 18 N -0.344 5.344 19 C 0.397 3.603 20 O -0.458 6.458 21 C -0.215 4.215 22 N -0.138 5.138 23 C -0.189 4.189 24 C -0.097 4.097 25 C -0.101 4.101 26 C -0.122 4.122 27 C -0.130 4.130 28 C -0.103 4.103 29 N 0.010 4.990 30 H 0.090 0.910 31 H 0.066 0.934 32 H 0.110 0.890 33 H 0.076 0.924 34 H 0.126 0.874 35 H 0.159 0.841 36 H 0.090 0.910 37 H 0.128 0.872 38 H 0.232 0.768 39 H 0.088 0.912 40 H 0.247 0.753 41 H 0.234 0.766 42 H 0.205 0.795 43 H 0.202 0.798 44 H 0.205 0.795 45 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -16.315 5.257 21.910 27.818 hybrid contribution 0.744 -1.000 0.050 1.248 sum -15.570 4.257 21.960 27.254 Atomic orbital electron populations 1.22070 0.92571 1.03237 1.03071 1.21160 0.95153 0.97037 0.82359 0.90744 1.22400 0.86152 1.00679 0.98089 1.60023 1.10351 1.57594 1.04202 1.21564 0.90153 0.99202 0.95764 1.20957 0.90797 0.82226 0.83818 1.90504 1.72904 1.52894 1.35051 1.41905 1.06837 1.51544 1.20572 1.19604 0.83129 1.37077 1.06733 0.90644 1.26035 1.04923 0.95752 0.94477 1.69663 1.38348 1.38302 1.09598 0.85005 0.76786 0.78580 0.78054 1.19708 1.19196 1.19864 1.45631 1.65688 1.14504 1.08542 1.16230 0.76976 0.85075 0.81989 1.90766 1.53711 1.15806 1.85512 1.22127 1.21458 0.90452 0.87507 1.69817 1.11021 1.10065 1.22942 1.23350 1.08283 0.99409 0.87819 1.20666 1.05146 0.89878 0.94046 1.21143 0.99022 0.99791 0.90155 1.21766 0.96615 0.91486 1.02344 1.21559 0.97873 1.03264 0.90261 1.22315 1.04345 0.85143 0.98484 1.42520 1.37949 1.09409 1.09136 0.91010 0.93419 0.89046 0.92361 0.87366 0.84134 0.91006 0.87175 0.76831 0.91219 0.75318 0.76563 0.79457 0.79759 0.79512 0.81766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.81 9.48 71.98 0.68 -2.13 16 2 C 0.15 3.59 2.88 44.99 0.13 3.72 16 3 H 0.07 2.21 7.57 -2.39 -0.02 2.19 16 4 C 0.06 1.28 5.30 86.30 0.46 1.74 16 5 N -0.69 -22.98 6.12 -517.93 -3.17 -26.15 16 6 C 0.07 2.28 6.17 85.56 0.53 2.81 16 7 C 0.43 21.51 7.82 87.66 0.69 22.20 16 8 O -0.63 -36.73 15.78 -3.06 -0.05 -36.77 16 9 N -0.57 -30.10 5.29 -306.99 -1.62 -31.72 16 10 C -0.34 -19.62 9.68 84.04 0.81 -18.80 16 11 H 0.08 4.72 7.16 -2.91 -0.02 4.70 16 12 C -0.01 -0.65 5.50 84.93 0.47 -0.18 16 13 N -0.92 -50.14 13.05 21.66 0.28 -49.85 16 14 Si 0.99 43.82 29.55 68.60 2.03 45.85 16 15 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 16 H -0.27 -11.02 7.11 99.48 0.71 -10.32 16 17 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 18 N -0.69 -19.18 4.35 -446.84 -1.94 -21.12 16 19 C 0.61 19.67 7.74 86.34 0.67 20.34 16 20 O -0.58 -20.49 14.99 -4.55 -0.07 -20.56 16 21 C 0.03 0.92 7.82 135.57 1.06 1.98 16 22 N -0.42 -12.41 10.79 -187.52 -2.02 -14.44 16 23 C -0.03 -0.57 12.00 84.93 1.02 0.44 16 24 C 0.02 0.33 6.80 39.10 0.27 0.60 16 25 C -0.08 -0.94 10.11 22.35 0.23 -0.71 16 26 C -0.10 -0.83 10.08 22.33 0.23 -0.61 16 27 C -0.11 -1.27 9.98 22.07 0.22 -1.05 16 28 C 0.02 0.41 10.52 83.31 0.88 1.29 16 29 N -0.32 -8.39 2.95 -340.22 -1.00 -9.40 16 30 H 0.07 1.15 8.14 -2.38 -0.02 1.13 16 31 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.11 2.11 8.14 -2.38 -0.02 2.09 16 35 H 0.34 12.48 7.28 -89.69 -0.65 11.82 16 36 H 0.07 2.14 8.14 -2.38 -0.02 2.12 16 37 H 0.11 3.38 8.14 -2.39 -0.02 3.36 16 38 H 0.40 19.67 7.90 -92.71 -0.73 18.93 16 39 H 0.28 14.22 8.31 -92.71 -0.77 13.44 16 40 H 0.41 10.87 7.79 -92.70 -0.72 10.14 16 41 H 0.22 3.24 8.06 -2.91 -0.02 3.22 16 42 H 0.19 0.74 8.06 -2.91 -0.02 0.71 16 43 H 0.19 0.01 8.06 -2.91 -0.02 -0.01 16 44 H 0.19 0.80 8.06 -2.91 -0.02 0.78 16 45 H 0.17 3.74 6.77 -2.91 -0.02 3.72 16 Total: -1.00 -83.24 388.06 -0.29 -83.53 By element: Atomic # 1 Polarization: 50.06 SS G_CDS: -1.05 Total: 49.01 kcal Atomic # 6 Polarization: 23.30 SS G_CDS: 8.32 Total: 31.62 kcal Atomic # 7 Polarization: -143.20 SS G_CDS: -9.48 Total: -152.68 kcal Atomic # 8 Polarization: -57.21 SS G_CDS: -0.12 Total: -57.33 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Total: -83.24 -0.29 -83.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483149384.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.812 kcal (2) G-P(sol) polarization free energy of solvation -83.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.87 seconds